Wall clock time and date at job start Tue Mar 31 2020 11:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35534 * 125.67786 * 2 1 4 4 C 1.35452 * 108.87394 * 180.30799 * 3 2 1 5 5 C 1.39844 * 107.86094 * 359.73267 * 4 3 2 6 6 C 1.37654 * 125.67898 * 179.85077 * 2 1 3 7 7 C 1.46674 * 126.23217 * 359.95757 * 6 2 1 8 8 O 1.21699 * 120.00053 * 5.49073 * 7 6 2 9 9 N 1.34779 * 120.00123 * 185.48211 * 7 6 2 10 10 C 1.47176 * 125.64548 * 354.93554 * 9 7 6 11 11 C 1.55342 * 106.96089 * 180.92287 * 10 9 7 12 12 H 1.08999 * 112.90876 * 214.96412 * 11 10 9 13 13 C 1.53004 * 106.41769 * 91.60411 * 11 10 9 14 14 C 1.52593 * 111.05142 * 197.20903 * 13 11 10 15 15 C 1.51912 * 108.63986 * 62.02642 * 14 13 11 16 16 C 1.52819 * 108.82863 * 296.45232 * 15 14 13 17 17 H 1.08999 * 108.96717 * 297.63455 * 16 15 14 18 18 N 1.46498 * 109.02723 * 178.76730 * 16 15 14 19 19 C 1.36936 * 120.00617 * 82.75670 * 18 16 15 20 20 H 1.08002 * 119.99434 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00654 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99710 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00226 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47202 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47136 * 300.00368 * 23 21 19 26 26 H 1.48499 * 109.46971 * 60.00017 * 23 21 19 27 27 C 1.50734 * 111.74750 * 58.18306 * 16 15 14 28 28 H 1.08997 * 109.26906 * 186.93816 * 27 16 15 29 29 C 1.47282 * 125.95578 * 175.58902 * 9 7 6 30 30 H 1.09006 * 109.47096 * 274.59323 * 1 2 3 31 31 H 1.08997 * 109.47691 * 34.58763 * 1 2 3 32 32 H 1.09001 * 109.47130 * 154.59452 * 1 2 3 33 33 H 1.08001 * 125.56707 * 0.02562 * 3 2 1 34 34 H 1.07997 * 126.07073 * 179.76728 * 4 3 2 35 35 H 1.07999 * 126.45197 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.96205 * 61.54618 * 10 9 7 37 37 H 1.08995 * 109.96101 * 300.30126 * 10 9 7 38 38 H 1.09001 * 109.15822 * 317.61127 * 13 11 10 39 39 H 1.08992 * 109.16122 * 76.85766 * 13 11 10 40 40 H 1.09011 * 109.67409 * 182.08414 * 14 13 11 41 41 H 1.08997 * 109.68023 * 302.61786 * 14 13 11 42 42 H 1.09004 * 109.97220 * 176.21221 * 15 14 13 43 43 H 1.08999 * 108.76459 * 55.97379 * 15 14 13 44 44 H 0.97002 * 120.00072 * 262.76685 * 18 16 15 45 45 H 0.96995 * 119.99881 * 179.97438 * 22 21 19 46 46 H 1.09001 * 110.84820 * 84.82040 * 29 9 7 47 47 H 1.09001 * 109.92503 * 322.28006 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0069 5 6 3.5779 -0.6888 -0.0052 6 6 2.2678 -1.1182 0.0029 7 6 1.8124 -2.5124 0.0074 8 8 0.6261 -2.7654 -0.0919 9 7 2.7076 -3.5134 0.1214 10 6 4.1709 -3.3571 0.1428 11 6 4.7771 -4.7821 0.2648 12 1 5.6870 -4.8063 0.8645 13 6 5.0170 -5.2738 -1.1642 14 6 5.2061 -6.7875 -1.1985 15 6 3.9330 -7.4474 -0.6972 16 6 3.7140 -7.0514 0.7624 17 1 4.5460 -7.4246 1.3595 18 7 2.4714 -7.6618 1.2416 19 6 2.4701 -8.9593 1.6793 20 1 3.3854 -9.5326 1.6715 21 6 1.2926 -9.5378 2.1328 22 7 0.1771 -8.8392 2.1417 23 14 1.2912 -11.3076 2.7304 24 1 -0.0801 -11.6847 3.1578 25 1 1.7295 -12.2023 1.6292 26 1 2.2229 -11.4430 3.8787 27 6 3.6224 -5.5559 0.9277 28 1 3.5907 -5.3127 1.9897 29 6 2.3917 -4.9477 0.2320 30 1 -0.3633 0.0823 1.0244 31 1 -0.3634 0.8460 -0.5833 32 1 -0.3633 -0.9283 -0.4409 33 1 1.9082 2.1236 0.0004 34 1 4.4131 1.3612 -0.0122 35 1 4.4583 -1.3144 -0.0098 36 1 4.4680 -2.7518 0.9992 37 1 4.5084 -2.8868 -0.7807 38 1 4.1606 -5.0061 -1.7830 39 1 5.9104 -4.7932 -1.5626 40 1 5.4118 -7.1086 -2.2198 41 1 6.0366 -7.0685 -0.5508 42 1 4.0196 -8.5312 -0.7756 43 1 3.0960 -7.0996 -1.3026 44 1 1.6494 -7.1468 1.2488 45 1 -0.6458 -9.2436 2.4583 46 1 2.2521 -5.3913 -0.7538 47 1 1.5002 -5.0856 0.8437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992624058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:29 Heat of formation + Delta-G solvation = 13.652507 kcal Electronic energy + Delta-G solvation = -27479.685645 eV Core-core repulsion = 23855.650693 eV Total energy + Delta-G solvation = -3624.034952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.47400 -41.43573 -39.46136 -37.05385 -35.49757 -33.81755 -33.32777 -32.10179 -30.88056 -29.85792 -27.97352 -27.31368 -26.18795 -25.40656 -22.90408 -22.82817 -21.97110 -21.44481 -20.25608 -19.77217 -19.06255 -18.04161 -17.34566 -17.32871 -16.70602 -16.47147 -16.04679 -15.75196 -15.37390 -15.29054 -15.00704 -14.85137 -14.56911 -14.22294 -14.10713 -13.96063 -13.79396 -13.55833 -13.22998 -13.11725 -12.96266 -12.91858 -12.79009 -12.71122 -12.28708 -12.25949 -12.13207 -11.95625 -11.88257 -11.26317 -11.20245 -11.04736 -10.95981 -10.72301 -9.81014 -9.64858 -9.15512 -8.98990 -7.92468 -5.21417 0.46650 1.45729 1.49139 1.55091 1.55477 1.85343 2.27655 2.32674 2.56359 3.35352 3.40281 3.46606 3.71927 3.78801 3.97099 4.11014 4.19471 4.20831 4.27382 4.32772 4.36336 4.38267 4.47478 4.52309 4.55252 4.62535 4.65444 4.72237 4.77669 4.78825 4.87381 4.93067 5.11449 5.14989 5.21835 5.23167 5.29391 5.31256 5.39247 5.45515 5.53808 5.59236 5.72076 5.87325 6.01140 6.28982 6.33712 6.46351 7.03285 7.34219 8.11730 8.33187 9.31085 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.003482 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.914830 B = 8039.477503 C = 9258.278537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.424 5.424 3 C 0.023 3.977 4 C -0.218 4.218 5 C -0.142 4.142 6 C -0.089 4.089 7 C 0.586 3.414 8 O -0.600 6.600 9 N -0.603 5.603 10 C 0.094 3.906 11 C -0.078 4.078 12 H 0.132 0.868 13 C -0.108 4.108 14 C -0.109 4.109 15 C -0.129 4.129 16 C 0.189 3.811 17 H 0.052 0.948 18 N -0.743 5.743 19 C -0.234 4.234 20 H 0.080 0.920 21 C -0.081 4.081 22 N -0.975 5.975 23 Si 0.972 3.028 24 H -0.300 1.300 25 H -0.278 1.278 26 H -0.276 1.276 27 C -0.088 4.088 28 H 0.065 0.935 29 C 0.129 3.871 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.204 0.796 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.045 0.955 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.035 0.965 44 H 0.369 0.631 45 H 0.248 0.752 46 H 0.060 0.940 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.809 21.776 -6.939 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.098 5.098 3 C -0.113 4.113 4 C -0.241 4.241 5 C -0.168 4.168 6 C -0.202 4.202 7 C 0.379 3.621 8 O -0.484 6.484 9 N -0.334 5.334 10 C -0.027 4.027 11 C -0.097 4.097 12 H 0.150 0.850 13 C -0.146 4.146 14 C -0.147 4.147 15 C -0.169 4.169 16 C 0.081 3.919 17 H 0.070 0.930 18 N -0.382 5.382 19 C -0.366 4.366 20 H 0.098 0.902 21 C -0.273 4.273 22 N -0.626 5.626 23 Si 0.802 3.198 24 H -0.227 1.227 25 H -0.204 1.204 26 H -0.202 1.202 27 C -0.108 4.108 28 H 0.084 0.916 29 C 0.006 3.994 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.094 0.906 33 H 0.221 0.779 34 H 0.189 0.811 35 H 0.192 0.808 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.063 0.937 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.201 0.799 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.802 21.496 -6.934 25.963 hybrid contribution -1.611 -1.310 0.502 2.136 sum 11.191 20.186 -6.432 23.960 Atomic orbital electron populations 1.22359 0.75889 1.05611 1.04224 1.44109 1.07380 1.05223 1.53044 1.22768 0.90747 0.92275 1.05479 1.21272 0.97010 0.94665 1.11163 1.22306 0.94477 0.96784 1.03228 1.19855 0.92029 0.86429 1.21848 1.17195 0.84329 0.84402 0.76181 1.90750 1.18123 1.85351 1.54210 1.48111 1.08316 1.05697 1.71272 1.23075 0.77510 0.98392 1.03690 1.22384 0.97743 0.91874 0.97683 0.84989 1.21576 1.02435 0.95671 0.94885 1.21229 0.96713 0.95320 1.01416 1.21887 0.98079 0.99514 0.97461 1.19798 0.88684 0.89874 0.93560 0.92964 1.42807 1.07205 1.11768 1.76447 1.19620 0.94564 0.89881 1.32517 0.90244 1.25583 0.95543 1.02363 1.03797 1.69849 0.99557 1.37973 1.55197 0.85220 0.76005 0.80223 0.78389 1.22696 1.20372 1.20153 1.21596 0.94654 0.95034 0.99478 0.91633 1.21777 0.98245 0.79636 0.99731 0.90430 0.86588 0.90562 0.77894 0.81097 0.80781 0.88900 0.88125 0.93654 0.88257 0.91170 0.90598 0.93960 0.94623 0.79940 0.94323 0.92196 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 10.76 127.77 1.38 2.62 16 2 N -0.42 -9.85 3.16 -534.33 -1.69 -11.54 16 3 C 0.02 0.37 11.38 83.48 0.95 1.32 16 4 C -0.22 -3.45 10.81 22.01 0.24 -3.21 16 5 C -0.14 -2.84 9.33 22.57 0.21 -2.63 16 6 C -0.09 -2.46 6.86 40.35 0.28 -2.18 16 7 C 0.59 20.55 7.81 86.45 0.68 21.23 16 8 O -0.60 -26.04 14.88 -4.34 -0.06 -26.11 16 9 N -0.60 -18.77 3.33 -816.43 -2.72 -21.49 16 10 C 0.09 1.90 4.27 87.05 0.37 2.27 16 11 C -0.08 -1.59 3.61 -9.65 -0.03 -1.63 16 12 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 13 C -0.11 -2.10 4.61 30.46 0.14 -1.96 16 14 C -0.11 -2.51 5.88 30.10 0.18 -2.33 16 15 C -0.13 -4.44 5.24 30.18 0.16 -4.28 16 16 C 0.19 7.21 2.48 44.20 0.11 7.32 16 17 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 18 N -0.74 -38.15 5.03 -326.74 -1.64 -39.79 16 19 C -0.23 -13.14 9.89 84.03 0.83 -12.31 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 22 N -0.97 -62.42 13.06 21.65 0.28 -62.14 16 23 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 24 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 27 C -0.09 -2.81 2.54 -10.89 -0.03 -2.84 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 C 0.13 4.79 5.01 86.53 0.43 5.22 16 30 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 2.14 5.98 -2.39 -0.01 2.12 16 33 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.18 2.59 4.42 -2.91 -0.01 2.58 16 36 H 0.09 1.56 6.88 -2.39 -0.02 1.54 16 37 H 0.10 1.57 6.58 -2.39 -0.02 1.55 16 38 H 0.04 1.05 7.08 -2.39 -0.02 1.04 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.03 1.34 6.79 -2.39 -0.02 1.32 16 44 H 0.37 21.00 6.44 -92.71 -0.60 20.40 16 45 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.06 2.35 6.07 -2.39 -0.01 2.34 16 47 H 0.04 1.63 7.44 -2.39 -0.02 1.61 16 Total: -1.00 -79.43 359.46 2.93 -76.49 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.38 Total: 32.92 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 6.35 Total: 2.29 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -5.76 Total: -134.95 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.06 Total: -26.11 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -79.43 2.93 -76.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992624058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.146 kcal (2) G-P(sol) polarization free energy of solvation -79.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds