Wall clock time and date at job start Tue Mar 31 2020 11:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36446 * 124.85047 * 2 1 4 4 C 1.34485 * 108.85544 * 179.77329 * 3 2 1 5 5 C 1.46688 * 106.33146 * 0.37227 * 4 3 2 6 6 C 1.47269 * 126.94062 * 179.88832 * 5 4 3 7 7 O 1.21628 * 119.99619 * 179.68731 * 6 5 4 8 8 N 1.34777 * 119.99811 * 359.68799 * 6 5 4 9 9 C 1.48236 * 125.78676 * 359.97432 * 8 6 5 10 10 C 1.52328 * 105.86589 * 176.83689 * 9 8 6 11 11 H 1.08995 * 109.88375 * 272.32023 * 10 9 8 12 12 C 1.51448 * 117.44682 * 145.30477 * 10 9 8 13 13 C 1.53837 * 107.04345 * 181.23731 * 12 10 9 14 14 C 1.52530 * 111.66319 * 57.19442 * 13 12 10 15 15 C 1.53810 * 111.70256 * 305.95692 * 14 13 12 16 16 H 1.09000 * 110.01376 * 176.95034 * 15 14 13 17 17 N 1.46496 * 109.94954 * 298.16145 * 15 14 13 18 18 C 1.36933 * 120.00159 * 207.23040 * 17 15 14 19 19 H 1.08001 * 119.99943 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00525 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99394 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00253 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46746 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47093 * 300.00229 * 22 20 18 25 25 H 1.48493 * 109.47205 * 60.00155 * 22 20 18 26 26 C 1.51627 * 107.01762 * 57.53835 * 15 14 13 27 27 H 1.08995 * 110.50052 * 56.32193 * 26 15 14 28 28 C 1.48663 * 125.78155 * 180.02562 * 8 6 5 29 29 C 1.34662 * 124.84908 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46936 * 269.97545 * 1 2 3 31 31 H 1.08994 * 109.47356 * 29.97610 * 1 2 3 32 32 H 1.09003 * 109.47338 * 149.98065 * 1 2 3 33 33 H 1.07997 * 125.57126 * 0.05549 * 3 2 1 34 34 H 1.07995 * 126.83420 * 180.25256 * 4 3 2 35 35 H 1.09003 * 110.17136 * 295.93974 * 9 8 6 36 36 H 1.09001 * 110.17025 * 57.66480 * 9 8 6 37 37 H 1.09002 * 109.93648 * 300.61739 * 12 10 9 38 38 H 1.09002 * 109.93896 * 61.76550 * 12 10 9 39 39 H 1.09000 * 109.04381 * 177.76094 * 13 12 10 40 40 H 1.09006 * 109.04016 * 296.63267 * 13 12 10 41 41 H 1.09003 * 109.03107 * 185.38747 * 14 13 12 42 42 H 1.08993 * 109.03248 * 66.53742 * 14 13 12 43 43 H 0.97002 * 119.99739 * 27.22317 * 17 15 14 44 44 H 0.97000 * 119.99600 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.62505 * 37.11229 * 28 8 6 46 46 H 1.09004 * 110.75806 * 274.15847 * 28 8 6 47 47 H 1.07998 * 125.80077 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7492 0.0050 5 6 3.5461 -0.7177 -0.0008 6 6 4.7284 -1.5958 -0.0006 7 8 4.5884 -2.8040 -0.0001 8 7 5.9653 -1.0606 -0.0010 9 6 6.2833 0.3873 -0.0022 10 6 7.8016 0.4802 0.0786 11 1 8.1184 0.4744 1.1215 12 6 8.4721 1.6160 -0.6658 13 6 9.9876 1.4641 -0.4499 14 6 10.4893 0.1020 -0.9182 15 6 9.7029 -1.0484 -0.2673 16 1 10.0467 -2.0050 -0.6608 17 7 9.8789 -1.0143 1.1867 18 6 9.7757 -2.1686 1.9161 19 1 9.5642 -3.1041 1.4196 20 6 9.9430 -2.1364 3.2938 21 7 10.2013 -0.9964 3.8988 22 14 9.8016 -3.7109 4.2889 23 1 10.0196 -3.4091 5.7264 24 1 8.4476 -4.2925 4.1054 25 1 10.8246 -4.6826 3.8260 26 6 8.2420 -0.8406 -0.6164 27 1 8.1115 -0.7886 -1.6972 28 6 7.2420 -1.8222 -0.0015 29 6 2.2345 -1.1051 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3634 -0.8898 -0.5141 33 1 1.8828 2.1373 0.0009 34 1 4.3980 1.4017 0.0102 35 1 5.9268 0.8497 -0.9227 36 1 5.8294 0.8725 0.8619 37 1 8.2398 1.5520 -1.7288 38 1 8.1326 2.5726 -0.2683 39 1 10.5061 2.2448 -1.0065 40 1 10.2089 1.5791 0.6113 41 1 11.5435 0.0032 -0.6591 42 1 10.3833 0.0372 -2.0010 43 1 10.0685 -0.1740 1.6327 44 1 10.3178 -0.9738 4.8616 45 1 7.1547 -2.7175 -0.6169 46 1 7.5363 -2.0837 1.0150 47 1 1.8766 -2.1241 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992686440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:34 Heat of formation + Delta-G solvation = 37.588056 kcal Electronic energy + Delta-G solvation = -27590.304826 eV Core-core repulsion = 23967.307798 eV Total energy + Delta-G solvation = -3622.997029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23715 -39.91931 -38.01049 -35.25315 -33.57903 -32.92383 -31.30789 -30.22759 -29.13228 -28.89414 -27.17095 -26.32425 -24.60729 -23.28209 -21.75787 -20.97132 -20.41018 -20.02322 -18.94168 -18.62255 -17.25222 -16.99089 -15.78308 -15.61634 -15.34054 -14.88894 -14.68616 -14.38275 -14.03115 -13.90884 -13.67582 -13.40119 -13.17003 -12.86402 -12.80341 -12.53834 -12.48069 -12.19010 -12.12572 -11.94133 -11.64129 -11.42779 -11.10537 -11.01455 -10.79345 -10.68281 -10.31500 -10.20783 -10.06427 -9.78985 -9.44224 -9.43601 -9.26812 -8.81824 -8.62332 -8.39755 -7.95318 -6.92091 -5.73738 -3.01038 1.91644 2.45243 2.73125 3.49437 3.53823 3.56358 3.57440 3.92183 4.47894 4.64429 4.79716 4.82604 4.84684 4.97251 5.07139 5.10101 5.21918 5.35351 5.48713 5.52496 5.60068 5.68561 5.79857 5.80161 5.88607 5.90757 5.93175 6.03473 6.09332 6.11889 6.15736 6.23891 6.34754 6.42752 6.50110 6.68576 6.72760 6.74330 6.77705 6.88614 6.95614 6.97571 7.05216 7.16761 7.23006 7.75530 8.11637 8.45462 8.75253 9.57463 10.14285 10.49368 11.48490 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.004215 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.150433 B = 6640.671290 C = 7955.170413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.451 5.451 3 C -0.025 4.025 4 C -0.174 4.174 5 C -0.221 4.221 6 C 0.599 3.401 7 O -0.563 6.563 8 N -0.609 5.609 9 C 0.116 3.884 10 C -0.109 4.109 11 H 0.104 0.896 12 C -0.097 4.097 13 C -0.114 4.114 14 C -0.121 4.121 15 C 0.188 3.812 16 H 0.053 0.947 17 N -0.715 5.715 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.009 4.009 21 N -0.932 5.932 22 Si 0.900 3.100 23 H -0.292 1.292 24 H -0.285 1.285 25 H -0.286 1.286 26 C -0.119 4.119 27 H 0.063 0.937 28 C 0.117 3.883 29 C 0.066 3.934 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.102 0.898 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.909 8.902 -11.204 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.127 5.127 3 C -0.151 4.151 4 C -0.198 4.198 5 C -0.231 4.231 6 C 0.390 3.610 7 O -0.444 6.444 8 N -0.342 5.342 9 C -0.006 4.006 10 C -0.128 4.128 11 H 0.122 0.878 12 C -0.134 4.134 13 C -0.151 4.151 14 C -0.160 4.160 15 C 0.077 3.923 16 H 0.071 0.929 17 N -0.357 5.357 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.205 4.205 21 N -0.580 5.580 22 Si 0.731 3.269 23 H -0.218 1.218 24 H -0.211 1.211 25 H -0.213 1.213 26 C -0.141 4.141 27 H 0.082 0.918 28 C -0.004 4.004 29 C -0.069 4.069 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.182 0.818 34 H 0.173 0.827 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.220 0.780 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.120 0.880 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.406 8.093 -11.109 20.646 hybrid contribution -0.175 -0.473 0.824 0.966 sum -15.581 7.620 -10.285 20.165 Atomic orbital electron populations 1.22077 0.77219 1.04417 1.03407 1.43594 1.06561 1.05985 1.56546 1.21762 0.90672 0.91114 1.11589 1.22633 0.96388 0.93693 1.07112 1.20416 0.92491 0.93454 1.16700 1.16999 0.81328 0.86606 0.76107 1.90741 1.86063 1.14723 1.52908 1.48926 1.05419 1.07606 1.72209 1.21928 0.96395 0.81912 1.00413 1.21906 0.92391 0.95599 1.02926 0.87753 1.21237 0.95546 0.97372 0.99294 1.21453 0.94822 0.96804 1.02057 1.21793 1.00154 0.94951 0.99071 1.19915 0.90284 0.95814 0.86314 0.92903 1.42431 1.84801 1.08496 0.99994 1.19176 1.40591 0.87817 0.89245 0.91157 1.24675 1.02622 0.96615 0.96631 1.69639 1.55416 1.23969 1.08965 0.86366 0.78021 0.83129 0.79361 1.21821 1.21142 1.21300 1.22792 0.98515 0.95063 0.97749 0.91821 1.22189 0.80680 0.93872 1.03675 1.21733 0.89847 0.91596 1.03680 0.90796 0.89765 0.89756 0.81821 0.82696 0.92059 0.91397 0.92470 0.92347 0.92970 0.91427 0.91952 0.92865 0.78009 0.93560 0.91983 0.88045 0.81013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.03 59.85 0.66 1.05 16 2 N -0.45 -4.60 3.09 -124.53 -0.38 -4.98 16 3 C -0.03 -0.26 11.34 -16.83 -0.19 -0.45 16 4 C -0.17 -2.26 9.44 -37.50 -0.35 -2.61 16 5 C -0.22 -3.51 6.23 -103.35 -0.64 -4.15 16 6 C 0.60 11.73 7.85 -12.59 -0.10 11.64 16 7 O -0.56 -12.83 17.21 5.25 0.09 -12.74 16 8 N -0.61 -11.39 3.38 -172.20 -0.58 -11.97 16 9 C 0.12 1.79 4.69 -3.43 -0.02 1.77 16 10 C -0.11 -1.77 2.23 -90.36 -0.20 -1.97 16 11 H 0.10 2.08 6.60 -51.93 -0.34 1.74 16 12 C -0.10 -1.29 5.71 -27.08 -0.15 -1.45 16 13 C -0.11 -1.64 5.58 -26.54 -0.15 -1.79 16 14 C -0.12 -1.89 5.51 -26.55 -0.15 -2.04 16 15 C 0.19 3.53 3.01 -68.21 -0.21 3.33 16 16 H 0.05 1.04 8.07 -51.93 -0.42 0.62 16 17 N -0.72 -16.62 3.83 -53.70 -0.21 -16.83 16 18 C -0.24 -6.30 7.99 -15.06 -0.12 -6.42 16 19 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 22 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C -0.12 -2.07 2.33 -89.91 -0.21 -2.28 16 27 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 28 C 0.12 2.34 6.43 -2.83 -0.02 2.32 16 29 C 0.07 0.88 11.12 -16.84 -0.19 0.69 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 32 H 0.08 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.16 1.82 4.79 -52.49 -0.25 1.57 16 35 H 0.06 0.82 7.17 -51.93 -0.37 0.45 16 36 H 0.07 1.02 6.69 -51.93 -0.35 0.67 16 37 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.12 7.03 -51.93 -0.36 0.75 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.38 9.49 6.03 -40.82 -0.25 9.25 16 44 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 46 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 47 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -33.23 363.23 -9.30 -42.53 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.26 Total: 10.27 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -2.13 Total: -2.73 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.45 Total: -60.44 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.23 -9.30 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992686440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.120 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds