Wall clock time and date at job start Tue Mar 31 2020 11:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36446 * 124.85047 * 2 1 4 4 C 1.34485 * 108.85544 * 179.77329 * 3 2 1 5 5 C 1.46688 * 106.33146 * 0.37227 * 4 3 2 6 6 C 1.47269 * 126.94062 * 179.88832 * 5 4 3 7 7 O 1.21628 * 119.99619 * 179.68731 * 6 5 4 8 8 N 1.34777 * 119.99811 * 359.68799 * 6 5 4 9 9 C 1.48236 * 125.78676 * 359.97432 * 8 6 5 10 10 C 1.52328 * 105.86589 * 176.83689 * 9 8 6 11 11 H 1.08995 * 109.88375 * 272.32023 * 10 9 8 12 12 C 1.51448 * 117.44682 * 145.30477 * 10 9 8 13 13 C 1.53837 * 107.04345 * 181.23731 * 12 10 9 14 14 C 1.52530 * 111.66319 * 57.19442 * 13 12 10 15 15 C 1.53810 * 111.70256 * 305.95692 * 14 13 12 16 16 H 1.09000 * 110.01376 * 176.95034 * 15 14 13 17 17 N 1.46496 * 109.94954 * 298.16145 * 15 14 13 18 18 C 1.36933 * 120.00159 * 207.23040 * 17 15 14 19 19 H 1.08001 * 119.99943 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00525 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99394 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00253 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46746 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47093 * 300.00229 * 22 20 18 25 25 H 1.48493 * 109.47205 * 60.00155 * 22 20 18 26 26 C 1.51627 * 107.01762 * 57.53835 * 15 14 13 27 27 H 1.08995 * 110.50052 * 56.32193 * 26 15 14 28 28 C 1.48663 * 125.78155 * 180.02562 * 8 6 5 29 29 C 1.34662 * 124.84908 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46936 * 269.97545 * 1 2 3 31 31 H 1.08994 * 109.47356 * 29.97610 * 1 2 3 32 32 H 1.09003 * 109.47338 * 149.98065 * 1 2 3 33 33 H 1.07997 * 125.57126 * 0.05549 * 3 2 1 34 34 H 1.07995 * 126.83420 * 180.25256 * 4 3 2 35 35 H 1.09003 * 110.17136 * 295.93974 * 9 8 6 36 36 H 1.09001 * 110.17025 * 57.66480 * 9 8 6 37 37 H 1.09002 * 109.93648 * 300.61739 * 12 10 9 38 38 H 1.09002 * 109.93896 * 61.76550 * 12 10 9 39 39 H 1.09000 * 109.04381 * 177.76094 * 13 12 10 40 40 H 1.09006 * 109.04016 * 296.63267 * 13 12 10 41 41 H 1.09003 * 109.03107 * 185.38747 * 14 13 12 42 42 H 1.08993 * 109.03248 * 66.53742 * 14 13 12 43 43 H 0.97002 * 119.99739 * 27.22317 * 17 15 14 44 44 H 0.97000 * 119.99600 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.62505 * 37.11229 * 28 8 6 46 46 H 1.09004 * 110.75806 * 274.15847 * 28 8 6 47 47 H 1.07998 * 125.80077 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7492 0.0050 5 6 3.5461 -0.7177 -0.0008 6 6 4.7284 -1.5958 -0.0006 7 8 4.5884 -2.8040 -0.0001 8 7 5.9653 -1.0606 -0.0010 9 6 6.2833 0.3873 -0.0022 10 6 7.8016 0.4802 0.0786 11 1 8.1184 0.4744 1.1215 12 6 8.4721 1.6160 -0.6658 13 6 9.9876 1.4641 -0.4499 14 6 10.4893 0.1020 -0.9182 15 6 9.7029 -1.0484 -0.2673 16 1 10.0467 -2.0050 -0.6608 17 7 9.8789 -1.0143 1.1867 18 6 9.7757 -2.1686 1.9161 19 1 9.5642 -3.1041 1.4196 20 6 9.9430 -2.1364 3.2938 21 7 10.2013 -0.9964 3.8988 22 14 9.8016 -3.7109 4.2889 23 1 10.0196 -3.4091 5.7264 24 1 8.4476 -4.2925 4.1054 25 1 10.8246 -4.6826 3.8260 26 6 8.2420 -0.8406 -0.6164 27 1 8.1115 -0.7886 -1.6972 28 6 7.2420 -1.8222 -0.0015 29 6 2.2345 -1.1051 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3634 -0.8898 -0.5141 33 1 1.8828 2.1373 0.0009 34 1 4.3980 1.4017 0.0102 35 1 5.9268 0.8497 -0.9227 36 1 5.8294 0.8725 0.8619 37 1 8.2398 1.5520 -1.7288 38 1 8.1326 2.5726 -0.2683 39 1 10.5061 2.2448 -1.0065 40 1 10.2089 1.5791 0.6113 41 1 11.5435 0.0032 -0.6591 42 1 10.3833 0.0372 -2.0010 43 1 10.0685 -0.1740 1.6327 44 1 10.3178 -0.9738 4.8616 45 1 7.1547 -2.7175 -0.6169 46 1 7.5363 -2.0837 1.0150 47 1 1.8766 -2.1241 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992686440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:33 Heat of formation + Delta-G solvation = 17.013507 kcal Electronic energy + Delta-G solvation = -27591.197006 eV Core-core repulsion = 23967.307798 eV Total energy + Delta-G solvation = -3623.889208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20338 -41.28457 -39.48093 -36.79773 -35.32976 -33.77617 -33.04252 -31.55712 -30.59456 -30.07508 -28.46508 -27.28421 -26.06393 -25.11248 -22.94599 -22.20459 -21.73997 -21.03626 -20.18437 -20.01024 -19.13525 -18.19998 -17.21113 -16.81050 -16.56106 -16.26940 -16.02449 -15.81081 -15.60983 -15.21180 -15.06674 -14.72886 -14.32621 -14.16364 -13.97513 -13.64791 -13.53244 -13.35905 -13.20987 -13.03448 -13.02243 -12.93718 -12.80977 -12.62306 -12.50857 -12.25496 -12.15687 -11.77855 -11.59410 -11.30199 -11.08466 -10.93555 -10.85241 -10.53505 -9.70289 -9.47599 -9.21071 -8.91370 -7.90922 -5.14180 0.76616 1.42985 1.45894 1.50291 1.55351 1.89531 2.26481 2.56807 2.58196 3.41263 3.49582 3.77711 3.89556 4.00754 4.03190 4.07785 4.14110 4.26680 4.33997 4.44364 4.46325 4.48277 4.52054 4.64012 4.68980 4.70626 4.75219 4.75402 4.77231 4.89202 4.98787 5.04049 5.07373 5.13148 5.16664 5.28284 5.36445 5.44566 5.48457 5.52211 5.59629 5.61240 5.77162 5.80707 6.09087 6.32986 6.38860 6.69403 7.27464 7.40710 8.18752 8.42394 9.31977 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.004215 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.150433 B = 6640.671290 C = 7955.170413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.442 5.442 3 C -0.006 4.006 4 C -0.194 4.194 5 C -0.263 4.263 6 C 0.587 3.413 7 O -0.614 6.614 8 N -0.614 5.614 9 C 0.121 3.879 10 C -0.099 4.099 11 H 0.060 0.940 12 C -0.087 4.087 13 C -0.112 4.112 14 C -0.114 4.114 15 C 0.179 3.821 16 H 0.041 0.959 17 N -0.720 5.720 18 C -0.221 4.221 19 H 0.065 0.935 20 C -0.068 4.068 21 N -0.962 5.962 22 Si 0.950 3.050 23 H -0.294 1.294 24 H -0.294 1.294 25 H -0.278 1.278 26 C -0.109 4.109 27 H 0.091 0.909 28 C 0.117 3.883 29 C 0.065 3.935 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.207 0.793 34 H 0.164 0.836 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.378 0.622 44 H 0.248 0.752 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.926 11.685 -13.520 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.116 5.116 3 C -0.133 4.133 4 C -0.217 4.217 5 C -0.273 4.273 6 C 0.380 3.620 7 O -0.499 6.499 8 N -0.345 5.345 9 C -0.001 4.001 10 C -0.118 4.118 11 H 0.079 0.921 12 C -0.125 4.125 13 C -0.149 4.149 14 C -0.152 4.152 15 C 0.069 3.931 16 H 0.059 0.941 17 N -0.361 5.361 18 C -0.353 4.353 19 H 0.083 0.917 20 C -0.261 4.261 21 N -0.614 5.614 22 Si 0.781 3.219 23 H -0.220 1.220 24 H -0.221 1.221 25 H -0.204 1.204 26 C -0.130 4.130 27 H 0.109 0.891 28 C -0.005 4.005 29 C -0.073 4.073 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.224 0.776 34 H 0.181 0.819 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.211 0.789 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -17.440 10.907 -13.470 24.587 hybrid contribution 0.322 -1.363 1.474 2.033 sum -17.118 9.544 -11.996 22.979 Atomic orbital electron populations 1.22461 0.74069 1.06457 1.04836 1.43936 1.08407 1.04977 1.54284 1.22376 0.89758 0.92648 1.08484 1.22755 0.98199 0.92052 1.08715 1.20327 0.91887 0.94786 1.20335 1.17738 0.82495 0.86649 0.75117 1.90684 1.86852 1.16945 1.55387 1.49041 1.04723 1.08907 1.71870 1.22080 0.95752 0.80051 1.02179 1.21802 0.93033 0.96264 1.00708 0.92109 1.21233 0.94044 0.96781 1.00419 1.21444 0.96078 0.96757 1.00633 1.21718 0.98821 0.94115 1.00536 1.20183 0.91850 0.97128 0.83908 0.94061 1.42520 1.84602 1.07060 1.01905 1.19402 1.37648 0.88732 0.89551 0.91668 1.25238 1.04341 0.98758 0.97713 1.69756 1.57864 1.25264 1.08500 0.85550 0.77455 0.80755 0.78106 1.22028 1.22112 1.20417 1.22640 0.96461 0.94899 0.99021 0.89081 1.21936 0.82861 0.94835 1.00890 1.21815 0.89640 0.92788 1.03016 0.89613 0.86971 0.88648 0.77618 0.81888 0.88774 0.91071 0.89734 0.90228 0.89874 0.94387 0.92956 0.89630 0.78869 0.94319 0.93303 0.92686 0.80763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 11.03 127.77 1.41 1.84 16 2 N -0.44 -7.65 3.09 -547.90 -1.69 -9.34 16 3 C -0.01 -0.10 11.34 83.12 0.94 0.84 16 4 C -0.19 -4.60 9.44 23.62 0.22 -4.37 16 5 C -0.26 -8.32 6.23 -19.04 -0.12 -8.44 16 6 C 0.59 23.92 7.85 86.62 0.68 24.60 16 7 O -0.61 -29.74 17.21 -4.12 -0.07 -29.81 16 8 N -0.61 -23.57 3.38 -816.97 -2.76 -26.34 16 9 C 0.12 3.58 4.69 85.82 0.40 3.98 16 10 C -0.10 -3.11 2.23 -10.62 -0.02 -3.13 16 11 H 0.06 2.49 6.60 -2.39 -0.02 2.47 16 12 C -0.09 -2.02 5.71 30.37 0.17 -1.85 16 13 C -0.11 -2.93 5.58 30.72 0.17 -2.76 16 14 C -0.11 -3.33 5.51 30.71 0.17 -3.16 16 15 C 0.18 6.75 3.01 44.81 0.13 6.88 16 16 H 0.04 1.64 8.07 -2.39 -0.02 1.62 16 17 N -0.72 -34.72 3.83 -323.79 -1.24 -35.96 16 18 C -0.22 -12.26 7.99 84.03 0.67 -11.59 16 19 H 0.07 3.62 7.82 -2.91 -0.02 3.59 16 20 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 21 N -0.96 -58.88 13.06 21.65 0.28 -58.59 16 22 Si 0.95 48.55 29.55 68.60 2.03 50.58 16 23 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 24 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 25 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 26 C -0.11 -3.74 2.33 -10.33 -0.02 -3.76 16 27 H 0.09 2.70 8.06 -2.39 -0.02 2.68 16 28 C 0.12 4.93 6.43 85.97 0.55 5.49 16 29 C 0.06 1.66 11.12 83.91 0.93 2.59 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 0.23 8.13 -2.39 -0.02 0.21 16 32 H 0.09 0.50 8.13 -2.39 -0.02 0.48 16 33 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.16 3.40 4.79 -2.91 -0.01 3.39 16 35 H 0.09 2.22 7.17 -2.39 -0.02 2.20 16 36 H 0.07 2.08 6.69 -2.39 -0.02 2.06 16 37 H 0.08 1.59 8.06 -2.39 -0.02 1.57 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.23 7.03 -2.38 -0.02 1.21 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.38 19.40 6.03 -92.71 -0.56 18.84 16 44 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.05 2.12 8.07 -2.39 -0.02 2.10 16 46 H 0.05 2.82 6.04 -2.39 -0.01 2.80 16 47 H 0.18 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -78.77 363.23 3.73 -75.04 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.41 Total: 30.76 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.76 Total: 3.66 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -5.41 Total: -130.23 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.07 Total: -29.81 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -78.77 3.73 -75.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992686440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.055 kcal (2) G-P(sol) polarization free energy of solvation -78.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds