Wall clock time and date at job start Tue Mar 31 2020 11:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36448 * 124.84823 * 2 1 4 4 C 1.34487 * 108.85522 * 179.76913 * 3 2 1 5 5 C 1.46689 * 106.33165 * 0.37446 * 4 3 2 6 6 C 1.47262 * 126.94339 * 179.89092 * 5 4 3 7 7 O 1.21631 * 120.00143 * 179.68081 * 6 5 4 8 8 N 1.34776 * 119.99962 * 359.68523 * 6 5 4 9 9 C 1.47378 * 125.74596 * 0.02562 * 8 6 5 10 10 C 1.55441 * 106.74302 * 181.02222 * 9 8 6 11 11 H 1.08996 * 112.50364 * 213.26889 * 10 9 8 12 12 C 1.52993 * 106.44460 * 89.99276 * 10 9 8 13 13 C 1.52595 * 111.01524 * 197.03885 * 12 10 9 14 14 C 1.53314 * 108.45374 * 62.29237 * 13 12 10 15 15 C 1.52814 * 108.15368 * 296.14869 * 14 13 12 16 16 H 1.09006 * 109.04305 * 179.62791 * 15 14 13 17 17 N 1.46496 * 109.04497 * 298.58386 * 15 14 13 18 18 C 1.36945 * 119.99718 * 276.04311 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.50862 * 111.60647 * 59.10950 * 15 14 13 27 27 H 1.09000 * 109.65758 * 184.93707 * 26 15 14 28 28 C 1.47929 * 125.74872 * 179.97438 * 8 6 5 29 29 C 1.34655 * 124.85282 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47807 * 269.98032 * 1 2 3 31 31 H 1.09004 * 109.47127 * 29.98183 * 1 2 3 32 32 H 1.09001 * 109.46816 * 149.97513 * 1 2 3 33 33 H 1.07999 * 125.57493 * 359.97438 * 3 2 1 34 34 H 1.08003 * 126.83520 * 180.25195 * 4 3 2 35 35 H 1.09005 * 110.00549 * 61.70524 * 9 8 6 36 36 H 1.09001 * 110.00676 * 300.35159 * 9 8 6 37 37 H 1.09011 * 109.17011 * 76.64833 * 12 10 9 38 38 H 1.09001 * 109.13257 * 317.41128 * 12 10 9 39 39 H 1.08999 * 109.64421 * 302.60466 * 13 12 10 40 40 H 1.09002 * 109.63832 * 181.98052 * 13 12 10 41 41 H 1.08999 * 109.72447 * 176.48407 * 14 13 12 42 42 H 1.09005 * 109.72497 * 55.81639 * 14 13 12 43 43 H 0.96996 * 120.00499 * 96.04041 * 17 15 14 44 44 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 45 45 H 1.09006 * 110.57052 * 323.09567 * 28 8 6 46 46 H 1.09003 * 110.56948 * 85.80853 * 28 8 6 47 47 H 1.07995 * 125.79767 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7493 0.0051 5 6 3.5462 -0.7176 -0.0007 6 6 4.7284 -1.5957 -0.0004 7 8 4.5885 -2.8039 0.0003 8 7 5.9653 -1.0605 -0.0007 9 6 6.2805 0.3792 -0.0008 10 6 7.8301 0.4983 -0.0278 11 1 8.1913 1.3676 0.5216 12 6 8.2359 0.5369 -1.5024 13 6 9.7221 0.2332 -1.6691 14 6 9.9872 -1.1881 -1.1589 15 6 9.6796 -1.2219 0.3375 16 1 9.8571 -2.2292 0.7144 17 7 10.5713 -0.2886 1.0301 18 6 11.8325 -0.6845 1.3880 19 1 12.1694 -1.6849 1.1600 20 6 12.6777 0.2000 2.0437 21 7 12.2668 1.4192 2.3220 22 14 14.3977 -0.3403 2.5326 23 1 15.0938 0.7807 3.2138 24 1 14.3087 -1.5013 3.4540 25 1 15.1582 -0.7294 1.3180 26 6 8.2485 -0.8363 0.6194 27 1 8.0877 -0.7858 1.6963 28 6 7.2352 -1.8192 0.0001 29 6 2.2345 -1.1050 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.8828 2.1373 -0.0004 34 1 4.3980 1.4018 0.0103 35 1 5.8862 0.8473 0.9012 36 1 5.8545 0.8541 -0.8846 37 1 8.0257 1.5275 -1.9057 38 1 7.6554 -0.2039 -2.0522 39 1 10.3089 0.9458 -1.0895 40 1 9.9939 0.3010 -2.7225 41 1 11.0320 -1.4499 -1.3258 42 1 9.3423 -1.8934 -1.6832 43 1 10.2686 0.6099 1.2351 44 1 12.8574 2.0371 2.7806 45 1 7.1454 -2.7157 0.6137 46 1 7.5259 -2.0805 -1.0175 47 1 1.8767 -2.1240 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992686446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:43 Heat of formation + Delta-G solvation = 34.226450 kcal Electronic energy + Delta-G solvation = -27132.888849 eV Core-core repulsion = 23509.746050 eV Total energy + Delta-G solvation = -3623.142799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42162 -40.22049 -38.16702 -35.44900 -33.36694 -33.00141 -31.40215 -30.40409 -29.34959 -29.26868 -27.17070 -26.13856 -24.73594 -23.21388 -21.87803 -21.38287 -21.06806 -20.25814 -19.13652 -18.00256 -17.20356 -17.13289 -16.11459 -15.88196 -15.59927 -15.09951 -14.69111 -14.49270 -14.07255 -13.80760 -13.72274 -13.52245 -13.26842 -13.21868 -12.96394 -12.73951 -12.61668 -12.46355 -12.23060 -12.03056 -11.58080 -11.45160 -11.27740 -10.97307 -10.85654 -10.78346 -10.61437 -10.11982 -10.09638 -9.73254 -9.64931 -9.50576 -9.39080 -8.80778 -8.78654 -8.59735 -8.26166 -6.90369 -5.72835 -3.00297 1.71948 2.29062 2.57902 3.29047 3.46948 3.51678 3.52190 3.66056 4.36438 4.59681 4.68425 4.71825 4.74268 4.77679 4.85068 4.97109 5.08774 5.19793 5.33696 5.42608 5.53548 5.59699 5.62518 5.70814 5.75923 5.82362 5.87536 5.92986 5.99154 6.01263 6.08962 6.18114 6.23937 6.32520 6.47721 6.52394 6.55070 6.59417 6.59947 6.86918 6.89736 6.93810 7.01212 7.10637 7.17498 7.74447 7.79441 8.45376 8.46559 9.57774 10.15433 10.51025 11.49867 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.002813 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.111052 B = 9952.931572 C =10080.718293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.449 5.449 3 C -0.023 4.023 4 C -0.175 4.175 5 C -0.226 4.226 6 C 0.603 3.397 7 O -0.561 6.561 8 N -0.609 5.609 9 C 0.101 3.899 10 C -0.089 4.089 11 H 0.100 0.900 12 C -0.108 4.108 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.189 3.811 16 H 0.047 0.953 17 N -0.719 5.719 18 C -0.234 4.234 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.904 3.096 23 H -0.292 1.292 24 H -0.287 1.287 25 H -0.287 1.287 26 C -0.095 4.095 27 H 0.079 0.921 28 C 0.115 3.885 29 C 0.070 3.930 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.201 1.034 -7.301 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.125 5.125 3 C -0.149 4.149 4 C -0.199 4.199 5 C -0.236 4.236 6 C 0.394 3.606 7 O -0.442 6.442 8 N -0.342 5.342 9 C -0.022 4.022 10 C -0.108 4.108 11 H 0.118 0.882 12 C -0.146 4.146 13 C -0.150 4.150 14 C -0.175 4.175 15 C 0.078 3.922 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.365 4.365 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.115 4.115 27 H 0.098 0.902 28 C -0.007 4.007 29 C -0.065 4.065 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.183 0.817 34 H 0.174 0.826 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -23.558 0.322 -7.246 24.649 hybrid contribution 0.832 0.204 0.377 0.936 sum -22.726 0.526 -6.869 23.747 Atomic orbital electron populations 1.22102 0.77050 1.04563 1.03502 1.43621 1.06679 1.05979 1.56228 1.21801 0.90653 0.91201 1.11212 1.22639 0.96488 0.93586 1.07149 1.20321 0.92347 0.93440 1.17478 1.17009 0.81214 0.86597 0.75732 1.90752 1.86052 1.14708 1.52663 1.48398 1.05135 1.07840 1.72826 1.22783 0.96606 0.81691 1.01127 1.22284 0.92253 0.99096 0.97178 0.88172 1.21528 0.97499 1.00665 0.94881 1.21389 0.95195 0.98756 0.99643 1.22194 1.00876 0.95816 0.98571 1.19522 0.87020 0.94421 0.91200 0.93537 1.42382 1.12485 1.12986 1.68203 1.19196 0.89990 0.97214 1.30116 0.91313 1.24691 0.98415 0.96102 1.01742 1.69642 1.36276 1.05387 1.46992 0.86307 0.84760 0.77171 0.78191 1.21831 1.21384 1.21390 1.21852 0.95452 0.93803 1.00362 0.90214 1.22292 0.81869 0.95340 1.01238 1.21738 0.89799 0.91666 1.03321 0.90697 0.89647 0.89679 0.81692 0.82616 0.91364 0.91077 0.92670 0.92643 0.90221 0.93553 0.91940 0.93738 0.78223 0.93586 0.90648 0.91064 0.80961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 11.03 59.85 0.66 0.94 16 2 N -0.45 -3.78 3.09 -124.53 -0.38 -4.16 16 3 C -0.02 -0.20 11.34 -16.82 -0.19 -0.39 16 4 C -0.17 -1.91 9.41 -37.50 -0.35 -2.26 16 5 C -0.23 -3.02 6.23 -103.35 -0.64 -3.67 16 6 C 0.60 9.82 7.85 -12.59 -0.10 9.73 16 7 O -0.56 -10.82 17.19 5.25 0.09 -10.73 16 8 N -0.61 -9.20 3.34 -170.90 -0.57 -9.77 16 9 C 0.10 1.29 4.28 -2.27 -0.01 1.28 16 10 C -0.09 -1.29 3.27 -88.75 -0.29 -1.58 16 11 H 0.10 1.52 7.93 -51.93 -0.41 1.11 16 12 C -0.11 -1.52 4.60 -26.94 -0.12 -1.64 16 13 C -0.11 -1.85 5.85 -26.78 -0.16 -2.01 16 14 C -0.13 -2.36 5.42 -26.66 -0.14 -2.50 16 15 C 0.19 3.62 2.53 -69.10 -0.18 3.45 16 16 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 17 N -0.72 -17.11 4.17 -54.57 -0.23 -17.34 16 18 C -0.23 -6.31 9.90 -15.06 -0.15 -6.46 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 22 Si 0.90 22.29 29.55 -169.99 -5.02 17.26 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 C -0.09 -1.57 2.42 -90.51 -0.22 -1.78 16 27 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 28 C 0.12 1.80 5.80 -2.65 -0.02 1.79 16 29 C 0.07 0.77 11.12 -16.85 -0.19 0.58 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.20 8.13 -51.93 -0.42 -0.22 16 32 H 0.08 0.24 8.13 -51.93 -0.42 -0.18 16 33 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.16 1.53 4.80 -52.48 -0.25 1.28 16 35 H 0.07 0.82 7.01 -51.93 -0.36 0.46 16 36 H 0.07 0.81 6.50 -51.93 -0.34 0.47 16 37 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.05 0.77 6.93 -51.93 -0.36 0.41 16 39 H 0.08 1.56 7.38 -51.93 -0.38 1.17 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.04 0.70 6.70 -51.93 -0.35 0.35 16 43 H 0.38 9.63 7.22 -40.82 -0.29 9.34 16 44 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.08 1.24 8.05 -51.93 -0.42 0.83 16 46 H 0.07 1.10 5.79 -51.93 -0.30 0.80 16 47 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -33.21 363.86 -9.34 -42.55 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.24 Total: 8.58 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.19 Total: -5.02 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.46 Total: -58.13 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.21 -9.34 -42.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992686446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.776 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds