Wall clock time and date at job start Tue Mar 31 2020 11:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36448 * 124.84823 * 2 1 4 4 C 1.34487 * 108.85522 * 179.76913 * 3 2 1 5 5 C 1.46689 * 106.33165 * 0.37446 * 4 3 2 6 6 C 1.47262 * 126.94339 * 179.89092 * 5 4 3 7 7 O 1.21631 * 120.00143 * 179.68081 * 6 5 4 8 8 N 1.34776 * 119.99962 * 359.68523 * 6 5 4 9 9 C 1.47378 * 125.74596 * 0.02562 * 8 6 5 10 10 C 1.55441 * 106.74302 * 181.02222 * 9 8 6 11 11 H 1.08996 * 112.50364 * 213.26889 * 10 9 8 12 12 C 1.52993 * 106.44460 * 89.99276 * 10 9 8 13 13 C 1.52595 * 111.01524 * 197.03885 * 12 10 9 14 14 C 1.53314 * 108.45374 * 62.29237 * 13 12 10 15 15 C 1.52814 * 108.15368 * 296.14869 * 14 13 12 16 16 H 1.09006 * 109.04305 * 179.62791 * 15 14 13 17 17 N 1.46496 * 109.04497 * 298.58386 * 15 14 13 18 18 C 1.36945 * 119.99718 * 276.04311 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.50862 * 111.60647 * 59.10950 * 15 14 13 27 27 H 1.09000 * 109.65758 * 184.93707 * 26 15 14 28 28 C 1.47929 * 125.74872 * 179.97438 * 8 6 5 29 29 C 1.34655 * 124.85282 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47807 * 269.98032 * 1 2 3 31 31 H 1.09004 * 109.47127 * 29.98183 * 1 2 3 32 32 H 1.09001 * 109.46816 * 149.97513 * 1 2 3 33 33 H 1.07999 * 125.57493 * 359.97438 * 3 2 1 34 34 H 1.08003 * 126.83520 * 180.25195 * 4 3 2 35 35 H 1.09005 * 110.00549 * 61.70524 * 9 8 6 36 36 H 1.09001 * 110.00676 * 300.35159 * 9 8 6 37 37 H 1.09011 * 109.17011 * 76.64833 * 12 10 9 38 38 H 1.09001 * 109.13257 * 317.41128 * 12 10 9 39 39 H 1.08999 * 109.64421 * 302.60466 * 13 12 10 40 40 H 1.09002 * 109.63832 * 181.98052 * 13 12 10 41 41 H 1.08999 * 109.72447 * 176.48407 * 14 13 12 42 42 H 1.09005 * 109.72497 * 55.81639 * 14 13 12 43 43 H 0.96996 * 120.00499 * 96.04041 * 17 15 14 44 44 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 45 45 H 1.09006 * 110.57052 * 323.09567 * 28 8 6 46 46 H 1.09003 * 110.56948 * 85.80853 * 28 8 6 47 47 H 1.07995 * 125.79767 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7493 0.0051 5 6 3.5462 -0.7176 -0.0007 6 6 4.7284 -1.5957 -0.0004 7 8 4.5885 -2.8039 0.0003 8 7 5.9653 -1.0605 -0.0007 9 6 6.2805 0.3792 -0.0008 10 6 7.8301 0.4983 -0.0278 11 1 8.1913 1.3676 0.5216 12 6 8.2359 0.5369 -1.5024 13 6 9.7221 0.2332 -1.6691 14 6 9.9872 -1.1881 -1.1589 15 6 9.6796 -1.2219 0.3375 16 1 9.8571 -2.2292 0.7144 17 7 10.5713 -0.2886 1.0301 18 6 11.8325 -0.6845 1.3880 19 1 12.1694 -1.6849 1.1600 20 6 12.6777 0.2000 2.0437 21 7 12.2668 1.4192 2.3220 22 14 14.3977 -0.3403 2.5326 23 1 15.0938 0.7807 3.2138 24 1 14.3087 -1.5013 3.4540 25 1 15.1582 -0.7294 1.3180 26 6 8.2485 -0.8363 0.6194 27 1 8.0877 -0.7858 1.6963 28 6 7.2352 -1.8192 0.0001 29 6 2.2345 -1.1050 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.8828 2.1373 -0.0004 34 1 4.3980 1.4018 0.0103 35 1 5.8862 0.8473 0.9012 36 1 5.8545 0.8541 -0.8846 37 1 8.0257 1.5275 -1.9057 38 1 7.6554 -0.2039 -2.0522 39 1 10.3089 0.9458 -1.0895 40 1 9.9939 0.3010 -2.7225 41 1 11.0320 -1.4499 -1.3258 42 1 9.3423 -1.8934 -1.6832 43 1 10.2686 0.6099 1.2351 44 1 12.8574 2.0371 2.7806 45 1 7.1454 -2.7157 0.6137 46 1 7.5259 -2.0805 -1.0175 47 1 1.8767 -2.1240 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992686446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:42 Heat of formation + Delta-G solvation = 14.393826 kcal Electronic energy + Delta-G solvation = -27133.748856 eV Core-core repulsion = 23509.746050 eV Total energy + Delta-G solvation = -3624.002806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.23463 -41.42374 -39.45671 -36.95023 -35.04271 -33.72904 -33.07824 -31.65936 -30.93449 -30.07066 -28.26184 -27.12295 -26.19369 -24.83198 -23.22661 -22.59322 -22.15923 -21.11336 -20.09055 -19.34790 -19.14707 -18.17329 -17.20794 -17.17957 -16.47885 -16.32159 -16.03192 -15.81840 -15.35007 -15.25051 -15.12358 -14.76449 -14.55770 -14.16013 -13.98425 -13.92580 -13.58622 -13.30803 -13.12961 -13.04323 -12.96853 -12.85489 -12.73048 -12.62474 -12.57629 -12.23834 -12.14593 -11.98014 -11.76272 -11.30680 -11.12067 -10.93971 -10.80634 -10.64652 -9.71367 -9.47640 -9.20307 -8.91945 -7.88361 -5.14264 0.77647 1.49197 1.50932 1.56430 1.56710 1.88547 2.24704 2.57456 2.60256 3.44069 3.47254 3.53507 3.82268 3.96509 4.03619 4.09915 4.15726 4.21882 4.32119 4.34317 4.39622 4.45535 4.49539 4.57011 4.64027 4.65267 4.68203 4.77123 4.83305 4.85974 4.87601 4.92701 5.04637 5.07935 5.11787 5.19017 5.31182 5.35314 5.44280 5.51188 5.56274 5.66231 5.75571 5.79458 6.11270 6.34283 6.38968 6.62970 7.25594 7.41482 8.17847 8.43263 9.34731 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.002813 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.111052 B = 9952.931572 C =10080.718293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.442 5.442 3 C -0.009 4.009 4 C -0.194 4.194 5 C -0.264 4.264 6 C 0.596 3.404 7 O -0.605 6.605 8 N -0.611 5.611 9 C 0.110 3.890 10 C -0.087 4.087 11 H 0.093 0.907 12 C -0.100 4.100 13 C -0.108 4.108 14 C -0.128 4.128 15 C 0.187 3.813 16 H 0.032 0.968 17 N -0.726 5.726 18 C -0.232 4.232 19 H 0.070 0.930 20 C -0.073 4.073 21 N -0.966 5.966 22 Si 0.964 3.036 23 H -0.297 1.297 24 H -0.283 1.283 25 H -0.281 1.281 26 C -0.087 4.087 27 H 0.059 0.941 28 C 0.122 3.878 29 C 0.068 3.932 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.202 0.798 34 H 0.164 0.836 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.376 0.624 44 H 0.249 0.751 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.560 2.080 -8.534 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.116 5.116 3 C -0.136 4.136 4 C -0.217 4.217 5 C -0.274 4.274 6 C 0.389 3.611 7 O -0.489 6.489 8 N -0.342 5.342 9 C -0.011 4.011 10 C -0.106 4.106 11 H 0.111 0.889 12 C -0.137 4.137 13 C -0.146 4.146 14 C -0.168 4.168 15 C 0.078 3.922 16 H 0.050 0.950 17 N -0.366 5.366 18 C -0.365 4.365 19 H 0.087 0.913 20 C -0.265 4.265 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.223 1.223 24 H -0.209 1.209 25 H -0.207 1.207 26 C -0.107 4.107 27 H 0.078 0.922 28 C -0.001 4.001 29 C -0.070 4.070 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.219 0.781 34 H 0.181 0.819 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.209 0.791 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -25.950 1.364 -8.502 27.341 hybrid contribution 1.447 -0.166 0.752 1.639 sum -24.503 1.199 -7.750 25.727 Atomic orbital electron populations 1.22452 0.74206 1.06371 1.04851 1.43942 1.08374 1.05096 1.54222 1.22350 0.89978 0.92600 1.08684 1.22766 0.98041 0.92325 1.08566 1.20289 0.92001 0.94521 1.20587 1.17550 0.82097 0.86532 0.74890 1.90710 1.86676 1.16584 1.54904 1.48440 1.04633 1.08649 1.72525 1.22824 0.95008 0.80537 1.02770 1.22242 0.93614 0.97314 0.97387 0.88913 1.21475 0.95531 1.02309 0.94385 1.21319 0.96588 0.96730 0.99922 1.22076 1.00057 0.97489 0.97159 1.19660 0.87884 0.92702 0.91920 0.95004 1.42484 1.12237 1.13282 1.68626 1.19520 0.91128 0.97038 1.28766 0.91250 1.25394 1.01897 0.96390 1.02820 1.69785 1.37238 1.06320 1.48394 0.85342 0.80809 0.76531 0.77867 1.22300 1.20938 1.20718 1.21614 0.93922 0.95717 0.99465 0.92218 1.22118 0.82255 0.94628 1.01097 1.21865 0.89646 0.92769 1.02670 0.89525 0.87308 0.88568 0.78117 0.81912 0.90434 0.88683 0.90307 0.91715 0.93572 0.91833 0.94079 0.91316 0.79143 0.94210 0.92126 0.90361 0.80499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 11.03 127.77 1.41 1.67 16 2 N -0.44 -6.09 3.09 -547.91 -1.69 -7.78 16 3 C -0.01 -0.13 11.34 83.12 0.94 0.81 16 4 C -0.19 -3.78 9.41 23.62 0.22 -3.55 16 5 C -0.26 -6.80 6.23 -19.04 -0.12 -6.92 16 6 C 0.60 19.45 7.85 86.62 0.68 20.13 16 7 O -0.60 -23.94 17.19 -4.13 -0.07 -24.01 16 8 N -0.61 -18.16 3.34 -812.87 -2.72 -20.88 16 9 C 0.11 2.65 4.28 87.05 0.37 3.02 16 10 C -0.09 -2.43 3.27 -9.58 -0.03 -2.47 16 11 H 0.09 2.79 7.93 -2.39 -0.02 2.77 16 12 C -0.10 -2.59 4.60 30.46 0.14 -2.45 16 13 C -0.11 -3.45 5.85 30.57 0.18 -3.27 16 14 C -0.13 -4.46 5.42 30.64 0.17 -4.29 16 15 C 0.19 7.34 2.53 44.24 0.11 7.46 16 16 H 0.03 1.33 8.07 -2.38 -0.02 1.31 16 17 N -0.73 -35.52 4.17 -326.56 -1.36 -36.88 16 18 C -0.23 -12.80 9.90 84.03 0.83 -11.97 16 19 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 21 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 22 Si 0.96 46.50 29.55 68.60 2.03 48.52 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 C -0.09 -2.92 2.42 -10.72 -0.03 -2.95 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 C 0.12 3.85 5.80 86.50 0.50 4.35 16 29 C 0.07 1.40 11.12 83.92 0.93 2.34 16 30 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.11 0.01 8.13 -2.39 -0.02 -0.01 16 32 H 0.10 0.23 8.13 -2.39 -0.02 0.22 16 33 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 34 H 0.16 2.76 4.80 -2.91 -0.01 2.74 16 35 H 0.08 1.75 7.01 -2.38 -0.02 1.73 16 36 H 0.10 1.88 6.50 -2.39 -0.02 1.87 16 37 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.06 1.60 6.93 -2.39 -0.02 1.59 16 39 H 0.05 1.80 7.38 -2.39 -0.02 1.79 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 2.07 6.70 -2.38 -0.02 2.05 16 43 H 0.38 19.49 7.22 -92.71 -0.67 18.82 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 45 H 0.06 2.08 8.05 -2.38 -0.02 2.06 16 46 H 0.08 2.35 5.79 -2.39 -0.01 2.34 16 47 H 0.18 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -74.17 363.86 3.56 -70.61 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.31 Total: 30.22 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 6.78 Total: -1.77 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -5.49 Total: -123.57 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.07 Total: -24.01 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -74.17 3.56 -70.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992686446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.005 kcal (2) G-P(sol) polarization free energy of solvation -74.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds