Wall clock time and date at job start Tue Mar 31 2020 11:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36451 * 124.85132 * 2 1 4 4 C 1.34487 * 108.85575 * 179.77183 * 3 2 1 5 5 C 1.46688 * 106.33336 * 0.38009 * 4 3 2 6 6 C 1.47260 * 126.94351 * 179.88621 * 5 4 3 7 7 O 1.21631 * 120.00387 * 185.32818 * 6 5 4 8 8 N 1.34779 * 120.00214 * 5.33534 * 6 5 4 9 9 C 1.48654 * 125.79043 * 175.47819 * 8 6 5 10 10 C 1.53051 * 103.45097 * 155.61734 * 9 8 6 11 11 H 1.09004 * 110.55644 * 283.26862 * 10 9 8 12 12 C 1.51616 * 116.68385 * 155.89092 * 10 9 8 13 13 C 1.53817 * 107.02048 * 182.59904 * 12 10 9 14 14 C 1.52521 * 111.70513 * 57.53323 * 13 12 10 15 15 C 1.53843 * 111.66233 * 305.96044 * 14 13 12 16 16 H 1.08995 * 109.93995 * 297.72432 * 15 14 13 17 17 N 1.46505 * 109.93654 * 176.57833 * 15 14 13 18 18 C 1.36929 * 119.99892 * 86.15709 * 17 15 14 19 19 H 1.08001 * 120.00255 * 359.72825 * 18 17 15 20 20 C 1.38815 * 119.99999 * 179.97438 * 18 17 15 21 21 N 1.31625 * 120.00034 * 179.72707 * 20 18 17 22 22 Si 1.86800 * 119.99662 * 359.72430 * 20 18 17 23 23 H 1.48499 * 109.47047 * 90.00494 * 22 20 18 24 24 H 1.48509 * 109.46832 * 209.99831 * 22 20 18 25 25 H 1.48493 * 109.47481 * 329.99737 * 22 20 18 26 26 C 1.51439 * 107.11339 * 57.15589 * 15 14 13 27 27 H 1.08999 * 109.87583 * 54.23108 * 26 15 14 28 28 C 1.48243 * 125.77969 * 355.46716 * 8 6 5 29 29 C 1.34661 * 124.85192 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47179 * 269.97131 * 1 2 3 31 31 H 1.09004 * 109.47348 * 29.96990 * 1 2 3 32 32 H 1.09001 * 109.47264 * 149.97333 * 1 2 3 33 33 H 1.07998 * 125.57107 * 359.97438 * 3 2 1 34 34 H 1.08005 * 126.83509 * 180.25636 * 4 3 2 35 35 H 1.09005 * 110.62637 * 37.12627 * 9 8 6 36 36 H 1.09004 * 110.75795 * 274.17651 * 9 8 6 37 37 H 1.09000 * 109.94693 * 63.21657 * 12 10 9 38 38 H 1.09005 * 109.94313 * 301.97494 * 12 10 9 39 39 H 1.08996 * 109.03286 * 296.95577 * 13 12 10 40 40 H 1.09004 * 108.97226 * 178.07043 * 13 12 10 41 41 H 1.09000 * 109.04289 * 185.39445 * 14 13 12 42 42 H 1.09002 * 108.98284 * 66.48137 * 14 13 12 43 43 H 0.96998 * 120.00239 * 266.15591 * 17 15 14 44 44 H 0.96994 * 119.99498 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.17534 * 295.92410 * 28 8 6 46 46 H 1.09007 * 110.17157 * 57.65333 * 28 8 6 47 47 H 1.07997 * 125.80056 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7492 0.0051 5 6 3.5462 -0.7177 -0.0009 6 6 4.7283 -1.5958 -0.0008 7 8 4.5915 -2.7999 -0.1040 8 7 5.9620 -1.0652 0.1137 9 6 7.2311 -1.8313 0.2233 10 6 8.2856 -0.8492 -0.2925 11 1 8.2531 -0.7892 -1.3804 12 6 9.7083 -1.0647 0.1852 13 6 10.5592 0.0713 -0.4075 14 6 10.0311 1.4430 -0.0004 15 6 8.5416 1.6047 -0.3496 16 1 8.4026 1.5313 -1.4282 17 7 8.0539 2.9004 0.1296 18 6 8.1942 4.0162 -0.6515 19 1 8.6684 3.9420 -1.6191 20 6 7.7317 5.2439 -0.1977 21 7 7.8714 6.3174 -0.9463 22 14 6.9109 5.3721 1.4754 23 1 7.9376 5.6565 2.5099 24 1 5.9123 6.4711 1.4539 25 1 6.2302 4.0910 1.7924 26 6 7.7969 0.4837 0.3447 27 1 8.0266 0.4904 1.4102 28 6 6.2831 0.3816 0.1515 29 6 2.2345 -1.1051 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.8828 2.1373 -0.0004 34 1 4.3981 1.4017 0.0103 35 1 7.1971 -2.7224 -0.4036 36 1 7.4316 -2.1004 1.2604 37 1 10.0769 -2.0281 -0.1671 38 1 9.7446 -1.0273 1.2740 39 1 10.5475 -0.0058 -1.4947 40 1 11.5853 -0.0336 -0.0551 41 1 10.6035 2.2126 -0.5184 42 1 10.1599 1.5677 1.0748 43 1 7.6316 2.9679 1.0002 44 1 7.5485 7.1752 -0.6290 45 1 6.0124 0.8516 -0.7939 46 1 5.7547 0.8625 0.9748 47 1 1.8767 -2.1241 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992686448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:47 Heat of formation + Delta-G solvation = 35.161329 kcal Electronic energy + Delta-G solvation = -27359.784442 eV Core-core repulsion = 23736.682183 eV Total energy + Delta-G solvation = -3623.102259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.26743 -40.11450 -38.21766 -35.47105 -34.15238 -32.91085 -31.60760 -30.46960 -29.34390 -29.13422 -27.41220 -26.31594 -24.83310 -23.10785 -21.62498 -21.15239 -20.17856 -20.13322 -19.80198 -19.01001 -17.61026 -17.23957 -15.99635 -15.70577 -15.46687 -15.08492 -14.84261 -14.41383 -14.27307 -14.02110 -13.74768 -13.62221 -13.15541 -12.96517 -12.75922 -12.72319 -12.58187 -12.54122 -12.26116 -12.22762 -11.91140 -11.77971 -11.34842 -11.19696 -10.98430 -10.84445 -10.53306 -10.33435 -10.19677 -9.95367 -9.77604 -9.67271 -9.53015 -8.91618 -8.63842 -8.51877 -8.22286 -7.28204 -5.77751 -3.13315 1.81609 2.47831 2.71334 3.24933 3.35244 3.38782 3.44247 3.71750 4.43599 4.51575 4.57803 4.81199 4.81319 4.84852 4.86354 4.96284 5.09720 5.17899 5.32464 5.34066 5.41404 5.52283 5.52404 5.58895 5.63431 5.71453 5.84302 5.87434 5.88784 5.95614 5.98058 6.01305 6.06341 6.14637 6.15456 6.41004 6.43610 6.49642 6.50311 6.59766 6.76487 6.83138 7.00916 7.02934 7.17286 7.76504 7.98713 8.41289 8.46513 9.19739 9.92158 10.11994 11.40657 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009464 B = 0.005241 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.814553 B = 5341.052587 C = 7928.000984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.449 5.449 3 C -0.021 4.021 4 C -0.170 4.170 5 C -0.231 4.231 6 C 0.608 3.392 7 O -0.565 6.565 8 N -0.616 5.616 9 C 0.119 3.881 10 C -0.105 4.105 11 H 0.085 0.915 12 C -0.101 4.101 13 C -0.115 4.115 14 C -0.137 4.137 15 C 0.202 3.798 16 H 0.060 0.940 17 N -0.747 5.747 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.881 3.119 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.275 1.275 26 C -0.109 4.109 27 H 0.076 0.924 28 C 0.114 3.886 29 C 0.069 3.931 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 -15.071 3.232 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.125 5.125 3 C -0.147 4.147 4 C -0.194 4.194 5 C -0.241 4.241 6 C 0.400 3.600 7 O -0.446 6.446 8 N -0.349 5.349 9 C -0.003 4.003 10 C -0.125 4.125 11 H 0.104 0.896 12 C -0.139 4.139 13 C -0.153 4.153 14 C -0.177 4.177 15 C 0.092 3.908 16 H 0.078 0.922 17 N -0.388 5.388 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.711 3.289 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.201 1.201 26 C -0.129 4.129 27 H 0.094 0.906 28 C -0.008 4.008 29 C -0.066 4.066 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.185 0.815 34 H 0.178 0.822 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.322 -15.497 2.977 18.328 hybrid contribution -0.601 0.508 1.270 1.494 sum -9.923 -14.989 4.246 18.470 Atomic orbital electron populations 1.22092 0.77131 1.04568 1.03388 1.43633 1.06641 1.05993 1.56252 1.21868 0.90677 0.91224 1.10938 1.22767 0.96846 0.93481 1.06258 1.20271 0.92223 0.93499 1.18080 1.17004 0.81205 0.86455 0.75330 1.90730 1.86083 1.15101 1.52716 1.48866 1.05394 1.07918 1.72693 1.21925 0.82461 0.95011 1.00867 1.22088 0.94382 0.94904 1.01122 0.89648 1.21327 0.93531 0.98467 1.00599 1.21542 0.98395 0.94844 1.00538 1.22261 0.98955 0.95320 1.01207 1.19901 0.90432 0.83566 0.96875 0.92220 1.42770 1.71743 1.04421 1.19905 1.19066 1.32733 0.85106 1.00160 0.89194 1.24650 1.01117 0.95490 0.97729 1.69701 1.52199 0.98904 1.37392 0.86608 0.79573 0.77122 0.85590 1.21230 1.21883 1.20138 1.22311 0.93381 0.96288 1.00946 0.90593 1.22065 0.95794 0.80417 1.02536 1.21682 0.89770 0.91579 1.03602 0.90800 0.89573 0.89757 0.81515 0.82217 0.90506 0.91590 0.91983 0.91713 0.92362 0.92596 0.91516 0.92837 0.80657 0.93120 0.90396 0.90690 0.81071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.03 59.84 0.66 1.08 16 2 N -0.45 -4.80 3.09 -124.53 -0.38 -5.19 16 3 C -0.02 -0.26 11.34 -16.82 -0.19 -0.45 16 4 C -0.17 -2.46 9.43 -37.50 -0.35 -2.82 16 5 C -0.23 -3.51 6.23 -103.35 -0.64 -4.16 16 6 C 0.61 10.31 7.85 -12.59 -0.10 10.21 16 7 O -0.57 -10.84 17.19 5.25 0.09 -10.75 16 8 N -0.62 -9.50 3.38 -171.82 -0.58 -10.08 16 9 C 0.12 1.60 6.61 -2.83 -0.02 1.59 16 10 C -0.11 -1.35 2.44 -89.91 -0.22 -1.56 16 11 H 0.09 1.14 8.01 -51.93 -0.42 0.72 16 12 C -0.10 -1.14 5.71 -27.01 -0.15 -1.29 16 13 C -0.11 -1.44 5.83 -26.55 -0.15 -1.60 16 14 C -0.14 -2.19 5.46 -26.54 -0.14 -2.34 16 15 C 0.20 3.56 2.55 -68.28 -0.17 3.39 16 16 H 0.06 1.12 7.99 -51.93 -0.41 0.71 16 17 N -0.75 -16.32 4.89 -53.77 -0.26 -16.59 16 18 C -0.24 -6.42 10.44 -15.06 -0.16 -6.58 16 19 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.54 13.97 55.49 0.78 -27.76 16 22 Si 0.88 21.26 27.73 -169.99 -4.71 16.55 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.13 6.53 56.52 0.37 -5.76 16 26 C -0.11 -1.62 1.84 -90.05 -0.17 -1.79 16 27 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 28 C 0.11 1.74 4.69 -3.11 -0.01 1.73 16 29 C 0.07 0.87 11.12 -16.84 -0.19 0.69 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.08 0.38 8.13 -51.93 -0.42 -0.05 16 33 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.16 2.41 4.83 -52.48 -0.25 2.16 16 35 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.71 7.98 -51.93 -0.41 0.30 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.36 7.81 5.67 -40.82 -0.23 7.58 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.08 1.28 7.24 -51.93 -0.38 0.90 16 46 H 0.07 1.16 6.61 -51.93 -0.34 0.82 16 47 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -33.32 369.09 -9.15 -42.47 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.52 Total: 9.63 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.11 Total: -3.84 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.45 Total: -59.61 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.32 -9.15 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992686448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.631 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds