Wall clock time and date at job start Tue Mar 31 2020 11:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36451 * 124.85132 * 2 1 4 4 C 1.34487 * 108.85575 * 179.77183 * 3 2 1 5 5 C 1.46688 * 106.33336 * 0.38009 * 4 3 2 6 6 C 1.47260 * 126.94351 * 179.88621 * 5 4 3 7 7 O 1.21631 * 120.00387 * 185.32818 * 6 5 4 8 8 N 1.34779 * 120.00214 * 5.33534 * 6 5 4 9 9 C 1.48654 * 125.79043 * 175.47819 * 8 6 5 10 10 C 1.53051 * 103.45097 * 155.61734 * 9 8 6 11 11 H 1.09004 * 110.55644 * 283.26862 * 10 9 8 12 12 C 1.51616 * 116.68385 * 155.89092 * 10 9 8 13 13 C 1.53817 * 107.02048 * 182.59904 * 12 10 9 14 14 C 1.52521 * 111.70513 * 57.53323 * 13 12 10 15 15 C 1.53843 * 111.66233 * 305.96044 * 14 13 12 16 16 H 1.08995 * 109.93995 * 297.72432 * 15 14 13 17 17 N 1.46505 * 109.93654 * 176.57833 * 15 14 13 18 18 C 1.36929 * 119.99892 * 86.15709 * 17 15 14 19 19 H 1.08001 * 120.00255 * 359.72825 * 18 17 15 20 20 C 1.38815 * 119.99999 * 179.97438 * 18 17 15 21 21 N 1.31625 * 120.00034 * 179.72707 * 20 18 17 22 22 Si 1.86800 * 119.99662 * 359.72430 * 20 18 17 23 23 H 1.48499 * 109.47047 * 90.00494 * 22 20 18 24 24 H 1.48509 * 109.46832 * 209.99831 * 22 20 18 25 25 H 1.48493 * 109.47481 * 329.99737 * 22 20 18 26 26 C 1.51439 * 107.11339 * 57.15589 * 15 14 13 27 27 H 1.08999 * 109.87583 * 54.23108 * 26 15 14 28 28 C 1.48243 * 125.77969 * 355.46716 * 8 6 5 29 29 C 1.34661 * 124.85192 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47179 * 269.97131 * 1 2 3 31 31 H 1.09004 * 109.47348 * 29.96990 * 1 2 3 32 32 H 1.09001 * 109.47264 * 149.97333 * 1 2 3 33 33 H 1.07998 * 125.57107 * 359.97438 * 3 2 1 34 34 H 1.08005 * 126.83509 * 180.25636 * 4 3 2 35 35 H 1.09005 * 110.62637 * 37.12627 * 9 8 6 36 36 H 1.09004 * 110.75795 * 274.17651 * 9 8 6 37 37 H 1.09000 * 109.94693 * 63.21657 * 12 10 9 38 38 H 1.09005 * 109.94313 * 301.97494 * 12 10 9 39 39 H 1.08996 * 109.03286 * 296.95577 * 13 12 10 40 40 H 1.09004 * 108.97226 * 178.07043 * 13 12 10 41 41 H 1.09000 * 109.04289 * 185.39445 * 14 13 12 42 42 H 1.09002 * 108.98284 * 66.48137 * 14 13 12 43 43 H 0.96998 * 120.00239 * 266.15591 * 17 15 14 44 44 H 0.96994 * 119.99498 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.17534 * 295.92410 * 28 8 6 46 46 H 1.09007 * 110.17157 * 57.65333 * 28 8 6 47 47 H 1.07997 * 125.80056 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7492 0.0051 5 6 3.5462 -0.7177 -0.0009 6 6 4.7283 -1.5958 -0.0008 7 8 4.5915 -2.7999 -0.1040 8 7 5.9620 -1.0652 0.1137 9 6 7.2311 -1.8313 0.2233 10 6 8.2856 -0.8492 -0.2925 11 1 8.2531 -0.7892 -1.3804 12 6 9.7083 -1.0647 0.1852 13 6 10.5592 0.0713 -0.4075 14 6 10.0311 1.4430 -0.0004 15 6 8.5416 1.6047 -0.3496 16 1 8.4026 1.5313 -1.4282 17 7 8.0539 2.9004 0.1296 18 6 8.1942 4.0162 -0.6515 19 1 8.6684 3.9420 -1.6191 20 6 7.7317 5.2439 -0.1977 21 7 7.8714 6.3174 -0.9463 22 14 6.9109 5.3721 1.4754 23 1 7.9376 5.6565 2.5099 24 1 5.9123 6.4711 1.4539 25 1 6.2302 4.0910 1.7924 26 6 7.7969 0.4837 0.3447 27 1 8.0266 0.4904 1.4102 28 6 6.2831 0.3816 0.1515 29 6 2.2345 -1.1051 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.8828 2.1373 -0.0004 34 1 4.3981 1.4017 0.0103 35 1 7.1971 -2.7224 -0.4036 36 1 7.4316 -2.1004 1.2604 37 1 10.0769 -2.0281 -0.1671 38 1 9.7446 -1.0273 1.2740 39 1 10.5475 -0.0058 -1.4947 40 1 11.5853 -0.0336 -0.0551 41 1 10.6035 2.2126 -0.5184 42 1 10.1599 1.5677 1.0748 43 1 7.6316 2.9679 1.0002 44 1 7.5485 7.1752 -0.6290 45 1 6.0124 0.8516 -0.7939 46 1 5.7547 0.8625 0.9748 47 1 1.8767 -2.1241 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992686448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:46 Heat of formation + Delta-G solvation = 14.768832 kcal Electronic energy + Delta-G solvation = -27360.668728 eV Core-core repulsion = 23736.682183 eV Total energy + Delta-G solvation = -3623.986544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.24442 -41.28748 -39.49511 -36.91752 -35.68082 -33.83008 -33.42838 -31.63089 -30.89230 -30.12350 -28.51018 -27.30675 -26.06849 -24.85125 -22.79340 -22.31901 -21.37217 -21.16581 -21.13929 -20.08695 -19.54177 -18.25526 -17.20837 -16.83068 -16.68529 -16.33918 -16.01929 -15.97765 -15.35758 -15.28538 -15.10830 -14.66693 -14.59311 -14.24626 -14.09131 -13.86659 -13.69254 -13.49931 -13.42618 -13.14484 -13.12522 -13.03128 -12.83924 -12.65778 -12.44436 -12.30330 -11.85966 -11.79122 -11.68405 -11.47984 -11.26110 -11.02921 -10.90442 -10.81816 -9.76990 -9.54267 -9.26312 -9.24605 -7.96054 -5.28667 0.74082 1.41945 1.44416 1.47563 1.51872 1.84301 2.16998 2.52509 2.53592 3.24725 3.35525 3.55917 3.65537 3.91609 3.97257 3.99304 4.04923 4.21559 4.23684 4.28288 4.41116 4.43724 4.46045 4.55944 4.56823 4.63984 4.65881 4.72060 4.72927 4.74673 4.83810 4.91683 4.97812 5.05054 5.09542 5.23771 5.30054 5.32973 5.37848 5.44074 5.51877 5.67082 5.73108 5.84533 6.05894 6.27818 6.32922 6.52998 7.14477 7.21614 7.90196 8.10183 9.25811 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009464 B = 0.005241 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.814553 B = 5341.052587 C = 7928.000984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.441 5.441 3 C -0.014 4.014 4 C -0.198 4.198 5 C -0.267 4.267 6 C 0.601 3.399 7 O -0.596 6.596 8 N -0.617 5.617 9 C 0.118 3.882 10 C -0.092 4.092 11 H 0.077 0.923 12 C -0.093 4.093 13 C -0.109 4.109 14 C -0.130 4.130 15 C 0.199 3.801 16 H 0.041 0.959 17 N -0.747 5.747 18 C -0.220 4.220 19 H 0.055 0.945 20 C -0.062 4.062 21 N -0.987 5.987 22 Si 0.948 3.052 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.245 1.245 26 C -0.105 4.105 27 H 0.087 0.913 28 C 0.123 3.877 29 C 0.077 3.923 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.192 0.808 34 H 0.146 0.854 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.365 0.635 44 H 0.255 0.745 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -17.013 5.043 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.115 5.115 3 C -0.141 4.141 4 C -0.221 4.221 5 C -0.278 4.278 6 C 0.394 3.606 7 O -0.480 6.480 8 N -0.349 5.349 9 C -0.003 4.003 10 C -0.112 4.112 11 H 0.096 0.904 12 C -0.131 4.131 13 C -0.147 4.147 14 C -0.170 4.170 15 C 0.091 3.909 16 H 0.059 0.941 17 N -0.390 5.390 18 C -0.352 4.352 19 H 0.073 0.927 20 C -0.253 4.253 21 N -0.638 5.638 22 Si 0.776 3.224 23 H -0.210 1.210 24 H -0.227 1.227 25 H -0.170 1.170 26 C -0.125 4.125 27 H 0.106 0.894 28 C 0.001 3.999 29 C -0.061 4.061 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.209 0.791 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.199 0.801 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -10.511 -17.493 4.798 20.964 hybrid contribution -0.259 1.090 0.592 1.267 sum -10.771 -16.403 5.390 20.350 Atomic orbital electron populations 1.22472 0.73974 1.06394 1.05020 1.43941 1.08458 1.04904 1.54197 1.22204 0.90167 0.92593 1.09184 1.22713 0.97721 0.93209 1.08500 1.20361 0.92808 0.93755 1.20829 1.17352 0.82020 0.86359 0.74869 1.90691 1.86579 1.16229 1.54515 1.48924 1.05832 1.08018 1.72140 1.22052 0.81595 0.94845 1.01799 1.22032 0.95451 0.93135 1.00533 0.90438 1.21316 0.91605 0.98923 1.01252 1.21483 0.99543 0.92945 1.00725 1.22115 0.96860 0.97023 1.01003 1.20051 0.92131 0.82621 0.96141 0.94057 1.42741 1.72056 1.04618 1.19556 1.18982 1.30466 0.86648 0.99061 0.92744 1.25416 1.02839 0.95095 1.01967 1.69889 1.54534 0.99522 1.39826 0.85504 0.78391 0.78026 0.80486 1.21030 1.22656 1.16954 1.22166 0.92899 0.96099 1.01297 0.89448 1.21914 0.96013 0.80453 1.01534 1.21952 0.89262 0.92805 1.02069 0.89203 0.87885 0.87961 0.79139 0.83669 0.90514 0.90100 0.89431 0.90531 0.92398 0.90643 0.94330 0.92503 0.80137 0.93580 0.92249 0.90799 0.79405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 11.03 127.77 1.41 1.93 16 2 N -0.44 -8.38 3.09 -547.90 -1.69 -10.07 16 3 C -0.01 -0.33 11.34 83.12 0.94 0.62 16 4 C -0.20 -5.70 9.43 23.62 0.22 -5.48 16 5 C -0.27 -8.09 6.23 -19.04 -0.12 -8.21 16 6 C 0.60 20.39 7.85 86.61 0.68 21.07 16 7 O -0.60 -22.87 17.19 -4.13 -0.07 -22.94 16 8 N -0.62 -18.80 3.38 -815.77 -2.76 -21.56 16 9 C 0.12 2.99 6.61 85.98 0.57 3.55 16 10 C -0.09 -2.18 2.44 -10.33 -0.03 -2.21 16 11 H 0.08 1.99 8.01 -2.39 -0.02 1.97 16 12 C -0.09 -1.78 5.71 30.42 0.17 -1.61 16 13 C -0.11 -2.48 5.83 30.71 0.18 -2.30 16 14 C -0.13 -4.06 5.46 30.72 0.17 -3.89 16 15 C 0.20 7.01 2.55 44.76 0.11 7.13 16 16 H 0.04 1.61 7.99 -2.39 -0.02 1.59 16 17 N -0.75 -32.78 4.89 -324.02 -1.59 -34.37 16 18 C -0.22 -12.11 10.44 84.04 0.88 -11.23 16 19 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 20 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 21 N -0.99 -62.43 13.97 21.65 0.30 -62.13 16 22 Si 0.95 44.15 27.73 68.60 1.90 46.05 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.25 -10.06 6.53 99.48 0.65 -9.41 16 26 C -0.10 -2.99 1.84 -10.43 -0.02 -3.01 16 27 H 0.09 2.35 7.92 -2.39 -0.02 2.34 16 28 C 0.12 3.75 4.69 86.03 0.40 4.15 16 29 C 0.08 1.83 11.12 83.92 0.93 2.76 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.58 8.13 -2.38 -0.02 0.56 16 32 H 0.10 0.54 8.13 -2.39 -0.02 0.52 16 33 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.15 4.49 4.83 -2.91 -0.01 4.47 16 35 H 0.08 1.97 8.03 -2.38 -0.02 1.95 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.36 7.98 -2.38 -0.02 1.34 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.37 15.39 5.67 -92.71 -0.53 14.86 16 44 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.06 2.02 7.24 -2.39 -0.02 2.00 16 46 H 0.07 2.27 6.61 -2.38 -0.02 2.25 16 47 H 0.19 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -75.31 369.09 3.45 -71.85 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.38 Total: 32.98 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.98 Total: 0.17 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -5.73 Total: -128.12 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.07 Total: -22.94 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.05 kcal Total: -75.31 3.45 -71.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992686448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.624 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds