Wall clock time and date at job start Tue Mar 31 2020 11:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00218 * 2 1 4 4 C 1.50698 * 109.46785 * 90.00364 * 3 2 1 5 5 O 1.21274 * 120.00423 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99922 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63144 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 233.55709 * 7 6 4 9 9 C 1.53070 * 109.29524 * 305.57804 * 8 7 6 10 10 N 1.46498 * 109.44278 * 181.23594 * 9 8 7 11 11 C 1.36936 * 119.99742 * 84.79956 * 10 9 8 12 12 H 1.07997 * 120.00304 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99612 * 180.02562 * 11 10 9 14 14 N 1.31611 * 120.00172 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99810 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47222 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47403 * 119.99672 * 15 13 11 18 18 H 1.48496 * 109.47297 * 240.00177 * 15 13 11 19 19 C 1.53039 * 109.65812 * 61.15209 * 9 8 7 20 20 C 1.46928 * 120.62874 * 0.02562 * 6 4 3 21 21 C 1.39677 * 119.99546 * 180.02562 * 2 1 3 22 22 C 1.38913 * 120.06770 * 179.72226 * 21 2 1 23 23 C 1.38111 * 119.91672 * 179.76583 * 22 21 2 24 24 C 1.38285 * 120.07858 * 0.50573 * 23 22 21 25 25 C 1.38283 * 120.14764 * 359.74378 * 24 23 22 26 26 C 1.38100 * 120.07446 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47137 * 89.99544 * 1 2 3 28 28 H 1.08998 * 109.47144 * 209.99756 * 1 2 3 29 29 H 1.09004 * 109.46687 * 329.99526 * 1 2 3 30 30 H 1.09001 * 109.47218 * 330.00189 * 3 2 1 31 31 H 1.08997 * 109.47186 * 210.00607 * 3 2 1 32 32 H 1.09002 * 109.58751 * 353.41659 * 7 6 4 33 33 H 1.08996 * 109.58750 * 113.69843 * 7 6 4 34 34 H 1.08997 * 109.50046 * 65.38734 * 8 7 6 35 35 H 1.09003 * 109.49733 * 185.48713 * 8 7 6 36 36 H 1.09007 * 109.35101 * 301.12962 * 9 8 7 37 37 H 0.97004 * 120.00020 * 264.79513 * 10 9 8 38 38 H 0.97000 * 120.00375 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.49876 * 178.74890 * 19 9 8 40 40 H 1.09005 * 109.52615 * 58.67140 * 19 9 8 41 41 H 1.08998 * 109.58787 * 246.16207 * 20 6 4 42 42 H 1.09007 * 109.58600 * 6.44520 * 20 6 4 43 43 H 1.07993 * 120.04474 * 359.97438 * 22 21 2 44 44 H 1.08001 * 119.95647 * 180.25115 * 23 22 21 45 45 H 1.07994 * 119.91939 * 179.72435 * 24 23 22 46 46 H 1.07997 * 119.96024 * 179.97438 * 25 24 23 47 47 H 1.08007 * 120.03661 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 1.4208 5 8 2.0544 1.0213 2.3426 6 7 3.1110 2.8514 1.6672 7 6 3.3630 3.2889 3.0469 8 6 2.8423 4.7196 3.2166 9 6 3.4684 5.6161 2.1455 10 7 2.9954 6.9912 2.3230 11 6 3.6270 7.8236 3.2081 12 1 4.4736 7.4663 3.7755 13 6 3.1784 9.1264 3.3767 14 7 2.1464 9.5618 2.6855 15 14 4.0395 10.2617 4.5846 16 1 5.1624 9.5364 5.2315 17 1 4.5666 11.4465 3.8609 18 1 3.0739 10.7046 5.6222 19 6 3.0682 5.1147 0.7560 20 6 3.5935 3.6895 0.5610 21 6 2.1633 -1.2097 -0.0005 22 6 3.5525 -1.2115 -0.0064 23 6 4.2398 -2.4094 -0.0020 24 6 3.5468 -3.6060 -0.0024 25 6 2.1640 -3.6078 -0.0018 26 6 1.4704 -2.4136 -0.0014 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6085 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5139 32 1 2.8449 2.6268 3.7406 33 1 4.4339 3.2635 3.2484 34 1 1.7579 4.7276 3.1065 35 1 3.1107 5.0895 4.2062 36 1 4.5539 5.5902 2.2421 37 1 2.2348 7.3121 1.8135 38 1 1.8332 10.4722 2.8031 39 1 3.4971 5.7678 -0.0040 40 1 1.9818 5.1171 0.6668 41 1 4.6834 3.6992 0.5584 42 1 3.2294 3.2901 -0.3857 43 1 4.0943 -0.2773 -0.0109 44 1 5.3198 -2.4115 -0.0024 45 1 4.0868 -4.5413 -0.0035 46 1 1.6258 -4.5441 -0.0025 47 1 0.3903 -2.4156 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997399450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:12 Heat of formation + Delta-G solvation = 20.461452 kcal Electronic energy + Delta-G solvation = -26460.506073 eV Core-core repulsion = 22836.766379 eV Total energy + Delta-G solvation = -3623.739694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.41054 -39.34092 -37.48106 -36.01188 -34.52927 -32.16630 -31.41882 -30.98704 -30.11051 -29.46499 -28.48203 -25.51838 -24.71846 -22.99964 -22.74019 -22.29763 -21.23066 -20.15471 -18.90885 -17.90321 -17.39855 -17.01583 -16.22839 -15.78175 -15.38800 -15.20757 -14.86468 -14.46180 -14.42349 -13.88749 -13.80736 -13.69903 -13.62848 -13.53780 -13.19376 -12.94477 -12.71162 -12.50500 -12.24643 -12.08087 -11.98267 -11.55047 -11.52684 -10.98232 -10.96106 -10.92986 -10.84818 -10.46946 -10.38001 -10.25571 -9.93504 -9.74218 -9.54522 -9.02460 -8.95229 -8.52501 -7.45307 -7.02227 -5.82105 -3.11275 1.33866 1.50741 2.62865 2.70580 3.20666 3.39671 3.45668 3.47639 3.81126 4.46362 4.53831 4.62344 4.71163 4.84270 4.90346 4.97348 5.06066 5.13445 5.17500 5.29599 5.33178 5.35041 5.40893 5.42199 5.53619 5.57129 5.58882 5.62576 5.73861 5.85652 5.87982 5.93518 6.12160 6.17177 6.23103 6.37131 6.39931 6.50294 6.52831 6.54729 6.72391 6.87161 6.99728 7.00633 7.31028 7.48659 7.65488 8.22219 8.36198 9.47661 10.04414 10.38925 11.40511 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033468 B = 0.002378 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.422767 B =11770.420382 C =12016.908190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.612 5.612 3 C 0.105 3.895 4 C 0.489 3.511 5 O -0.533 6.533 6 N -0.607 5.607 7 C 0.113 3.887 8 C -0.149 4.149 9 C 0.179 3.821 10 N -0.725 5.725 11 C -0.239 4.239 12 H 0.071 0.929 13 C -0.014 4.014 14 N -0.932 5.932 15 Si 0.906 3.094 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.292 1.292 19 C -0.140 4.140 20 C 0.110 3.890 21 C 0.226 3.774 22 C -0.195 4.195 23 C -0.072 4.072 24 C -0.183 4.183 25 C -0.074 4.074 26 C -0.196 4.196 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 -22.967 -9.961 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.322 5.322 3 C -0.022 4.022 4 C 0.274 3.726 5 O -0.410 6.410 6 N -0.341 5.341 7 C -0.010 4.010 8 C -0.190 4.190 9 C 0.069 3.931 10 N -0.365 5.365 11 C -0.370 4.370 12 H 0.089 0.911 13 C -0.210 4.210 14 N -0.581 5.581 15 Si 0.737 3.263 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.179 4.179 20 C -0.014 4.014 21 C 0.124 3.876 22 C -0.217 4.217 23 C -0.091 4.091 24 C -0.203 4.203 25 C -0.093 4.093 26 C -0.218 4.218 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.430 -23.063 -9.349 24.890 hybrid contribution 0.141 1.071 0.660 1.266 sum 0.571 -21.992 -8.689 23.653 Atomic orbital electron populations 1.21636 0.78953 1.03180 1.00787 1.45976 1.04937 1.01868 1.79393 1.21366 0.99460 0.87061 0.94349 1.21371 0.78024 0.80815 0.92346 1.90688 1.50691 1.53548 1.46049 1.48248 1.56112 1.21748 1.08014 1.21677 1.00399 0.96841 0.82070 1.22662 1.01066 0.92984 1.02280 1.20160 0.96690 0.85649 0.90603 1.42432 1.37543 1.06929 1.49571 1.19275 1.10005 0.92420 1.15324 0.91106 1.24752 0.98444 0.97503 1.00267 1.69664 1.27149 1.17031 1.44225 0.86133 0.78643 0.80946 0.80560 1.20532 1.21854 1.21876 1.22197 1.01531 0.94331 0.99840 1.21786 0.99460 0.91400 0.88717 1.17789 0.91167 0.85537 0.93064 1.20644 0.92184 0.98600 1.10314 1.20866 0.99381 0.91979 0.96868 1.20873 0.94285 0.97727 1.07450 1.20861 0.94246 0.97069 0.97113 1.20655 0.99627 0.91069 1.10453 0.93137 0.91204 0.91470 0.87651 0.87804 0.89861 0.91897 0.92395 0.90737 0.93415 0.78306 0.93536 0.90360 0.91765 0.91042 0.90417 0.86560 0.86342 0.86664 0.86375 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 10.19 59.85 0.61 1.50 16 2 N -0.61 -6.73 2.50 -181.00 -0.45 -7.18 16 3 C 0.11 1.06 3.99 -5.20 -0.02 1.04 16 4 C 0.49 6.71 7.77 -10.98 -0.09 6.62 16 5 O -0.53 -9.46 15.84 5.56 0.09 -9.37 16 6 N -0.61 -8.02 2.98 -172.80 -0.51 -8.54 16 7 C 0.11 1.68 6.43 -3.71 -0.02 1.66 16 8 C -0.15 -2.59 5.67 -26.59 -0.15 -2.74 16 9 C 0.18 3.29 2.73 -67.88 -0.19 3.11 16 10 N -0.72 -17.37 5.12 -53.37 -0.27 -17.64 16 11 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 12 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 13 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 14 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 15 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 C -0.14 -2.00 5.55 -26.64 -0.15 -2.15 16 20 C 0.11 1.20 6.34 -3.74 -0.02 1.18 16 21 C 0.23 2.65 6.55 -83.79 -0.55 2.10 16 22 C -0.20 -2.21 9.21 -39.38 -0.36 -2.57 16 23 C -0.07 -0.74 10.04 -39.61 -0.40 -1.13 16 24 C -0.18 -1.77 10.04 -39.55 -0.40 -2.17 16 25 C -0.07 -0.72 10.04 -39.62 -0.40 -1.12 16 26 C -0.20 -2.09 9.21 -39.38 -0.36 -2.45 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.61 6.20 -51.93 -0.32 0.29 16 29 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.11 0.85 7.62 -51.93 -0.40 0.46 16 31 H 0.10 0.86 5.99 -51.93 -0.31 0.55 16 32 H 0.08 1.34 7.00 -51.93 -0.36 0.97 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 38 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.62 5.93 -51.92 -0.31 0.31 16 43 H 0.12 1.22 6.14 -52.49 -0.32 0.89 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 47 H 0.12 1.10 6.14 -52.48 -0.32 0.78 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -33.19 375.82 -9.80 -42.99 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.28 Total: 8.19 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.74 Total: -4.20 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.51 Total: -60.30 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.19 -9.80 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997399450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.452 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds