Wall clock time and date at job start Tue Mar 31 2020 11:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00218 * 2 1 4 4 C 1.50698 * 109.46785 * 90.00364 * 3 2 1 5 5 O 1.21274 * 120.00423 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99922 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63144 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 233.55709 * 7 6 4 9 9 C 1.53070 * 109.29524 * 305.57804 * 8 7 6 10 10 N 1.46498 * 109.44278 * 181.23594 * 9 8 7 11 11 C 1.36936 * 119.99742 * 84.79956 * 10 9 8 12 12 H 1.07997 * 120.00304 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99612 * 180.02562 * 11 10 9 14 14 N 1.31611 * 120.00172 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99810 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47222 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47403 * 119.99672 * 15 13 11 18 18 H 1.48496 * 109.47297 * 240.00177 * 15 13 11 19 19 C 1.53039 * 109.65812 * 61.15209 * 9 8 7 20 20 C 1.46928 * 120.62874 * 0.02562 * 6 4 3 21 21 C 1.39677 * 119.99546 * 180.02562 * 2 1 3 22 22 C 1.38913 * 120.06770 * 179.72226 * 21 2 1 23 23 C 1.38111 * 119.91672 * 179.76583 * 22 21 2 24 24 C 1.38285 * 120.07858 * 0.50573 * 23 22 21 25 25 C 1.38283 * 120.14764 * 359.74378 * 24 23 22 26 26 C 1.38100 * 120.07446 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47137 * 89.99544 * 1 2 3 28 28 H 1.08998 * 109.47144 * 209.99756 * 1 2 3 29 29 H 1.09004 * 109.46687 * 329.99526 * 1 2 3 30 30 H 1.09001 * 109.47218 * 330.00189 * 3 2 1 31 31 H 1.08997 * 109.47186 * 210.00607 * 3 2 1 32 32 H 1.09002 * 109.58751 * 353.41659 * 7 6 4 33 33 H 1.08996 * 109.58750 * 113.69843 * 7 6 4 34 34 H 1.08997 * 109.50046 * 65.38734 * 8 7 6 35 35 H 1.09003 * 109.49733 * 185.48713 * 8 7 6 36 36 H 1.09007 * 109.35101 * 301.12962 * 9 8 7 37 37 H 0.97004 * 120.00020 * 264.79513 * 10 9 8 38 38 H 0.97000 * 120.00375 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.49876 * 178.74890 * 19 9 8 40 40 H 1.09005 * 109.52615 * 58.67140 * 19 9 8 41 41 H 1.08998 * 109.58787 * 246.16207 * 20 6 4 42 42 H 1.09007 * 109.58600 * 6.44520 * 20 6 4 43 43 H 1.07993 * 120.04474 * 359.97438 * 22 21 2 44 44 H 1.08001 * 119.95647 * 180.25115 * 23 22 21 45 45 H 1.07994 * 119.91939 * 179.72435 * 24 23 22 46 46 H 1.07997 * 119.96024 * 179.97438 * 25 24 23 47 47 H 1.08007 * 120.03661 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 1.4208 5 8 2.0544 1.0213 2.3426 6 7 3.1110 2.8514 1.6672 7 6 3.3630 3.2889 3.0469 8 6 2.8423 4.7196 3.2166 9 6 3.4684 5.6161 2.1455 10 7 2.9954 6.9912 2.3230 11 6 3.6270 7.8236 3.2081 12 1 4.4736 7.4663 3.7755 13 6 3.1784 9.1264 3.3767 14 7 2.1464 9.5618 2.6855 15 14 4.0395 10.2617 4.5846 16 1 5.1624 9.5364 5.2315 17 1 4.5666 11.4465 3.8609 18 1 3.0739 10.7046 5.6222 19 6 3.0682 5.1147 0.7560 20 6 3.5935 3.6895 0.5610 21 6 2.1633 -1.2097 -0.0005 22 6 3.5525 -1.2115 -0.0064 23 6 4.2398 -2.4094 -0.0020 24 6 3.5468 -3.6060 -0.0024 25 6 2.1640 -3.6078 -0.0018 26 6 1.4704 -2.4136 -0.0014 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6085 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5139 32 1 2.8449 2.6268 3.7406 33 1 4.4339 3.2635 3.2484 34 1 1.7579 4.7276 3.1065 35 1 3.1107 5.0895 4.2062 36 1 4.5539 5.5902 2.2421 37 1 2.2348 7.3121 1.8135 38 1 1.8332 10.4722 2.8031 39 1 3.4971 5.7678 -0.0040 40 1 1.9818 5.1171 0.6668 41 1 4.6834 3.6992 0.5584 42 1 3.2294 3.2901 -0.3857 43 1 4.0943 -0.2773 -0.0109 44 1 5.3198 -2.4115 -0.0024 45 1 4.0868 -4.5413 -0.0035 46 1 1.6258 -4.5441 -0.0025 47 1 0.3903 -2.4156 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997399450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:12 Heat of formation + Delta-G solvation = 0.802922 kcal Electronic energy + Delta-G solvation = -26461.358531 eV Core-core repulsion = 22836.766379 eV Total energy + Delta-G solvation = -3624.592152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41365 -40.20647 -38.72700 -36.84585 -36.13782 -33.87000 -32.46792 -31.90240 -31.19787 -30.73926 -29.42699 -26.70447 -25.99963 -24.31626 -24.09997 -23.12312 -22.16634 -21.35030 -20.07818 -19.09414 -18.66717 -18.30150 -17.16150 -16.74866 -16.61767 -16.27696 -16.11672 -15.51784 -15.40819 -15.34315 -15.23073 -14.82084 -14.61388 -14.54956 -14.30566 -14.03008 -13.83360 -13.42931 -13.36800 -13.11697 -12.92341 -12.89590 -12.81645 -12.62571 -12.24966 -12.18582 -12.12594 -11.94526 -11.69989 -11.67246 -11.43450 -11.21793 -10.91436 -10.52845 -9.77375 -9.66919 -9.01435 -8.22425 -7.95086 -5.23059 0.58888 0.74535 1.46533 1.47372 1.56710 1.59723 1.84888 2.30116 2.55387 3.05103 3.38272 3.53057 3.81998 3.87576 3.92673 4.00681 4.13729 4.15477 4.18367 4.27147 4.35723 4.36963 4.41509 4.45014 4.62919 4.65068 4.66814 4.73690 4.77667 4.82549 4.87028 4.88331 4.90998 4.98154 5.11312 5.18660 5.32302 5.38425 5.48486 5.53522 5.60471 5.64934 5.79229 6.00872 6.22460 6.27666 6.46115 6.56410 7.17486 7.33811 8.10276 8.32393 9.28504 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033468 B = 0.002378 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.422767 B =11770.420382 C =12016.908190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.619 5.619 3 C 0.108 3.892 4 C 0.487 3.513 5 O -0.580 6.580 6 N -0.607 5.607 7 C 0.123 3.877 8 C -0.136 4.136 9 C 0.173 3.827 10 N -0.737 5.737 11 C -0.234 4.234 12 H 0.075 0.925 13 C -0.078 4.078 14 N -0.970 5.970 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.293 1.293 18 H -0.298 1.298 19 C -0.131 4.131 20 C 0.115 3.885 21 C 0.205 3.795 22 C -0.212 4.212 23 C -0.082 4.082 24 C -0.191 4.191 25 C -0.081 4.081 26 C -0.210 4.210 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.372 0.628 38 H 0.250 0.750 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -24.555 -11.349 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.329 5.329 3 C -0.019 4.019 4 C 0.274 3.726 5 O -0.459 6.459 6 N -0.340 5.340 7 C -0.001 4.001 8 C -0.177 4.177 9 C 0.064 3.936 10 N -0.376 5.376 11 C -0.366 4.366 12 H 0.093 0.907 13 C -0.270 4.270 14 N -0.621 5.621 15 Si 0.798 3.202 16 H -0.190 1.190 17 H -0.220 1.220 18 H -0.225 1.225 19 C -0.170 4.170 20 C -0.008 4.008 21 C 0.104 3.896 22 C -0.235 4.235 23 C -0.100 4.100 24 C -0.211 4.211 25 C -0.099 4.099 26 C -0.233 4.233 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.157 0.843 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.737 -24.695 -10.755 26.992 hybrid contribution -0.251 1.456 1.112 1.849 sum 1.487 -23.239 -9.644 25.205 Atomic orbital electron populations 1.21719 0.78373 1.02709 1.01958 1.46138 1.05494 1.01944 1.79318 1.21529 1.01132 0.87429 0.91818 1.22143 0.76703 0.80141 0.93567 1.90669 1.52459 1.54970 1.47825 1.48329 1.55957 1.22055 1.07680 1.21424 1.00836 0.94406 0.83434 1.22438 0.99726 0.94693 1.00855 1.20435 0.96565 0.83202 0.93364 1.42661 1.37129 1.08908 1.48932 1.19638 1.09456 0.92740 1.14775 0.90659 1.25518 0.99631 0.99261 1.02551 1.69808 1.28974 1.17043 1.46247 0.85143 0.77777 0.78956 0.78337 1.19035 1.22018 1.22513 1.22083 1.01254 0.96657 0.97000 1.21956 1.00592 0.88720 0.89490 1.18056 0.91662 0.86149 0.93721 1.20845 0.92304 0.99327 1.10987 1.21173 1.00470 0.91919 0.96471 1.21203 0.94556 0.98505 1.06815 1.21195 0.94619 0.97717 0.96387 1.20911 1.00343 0.91314 1.10690 0.91024 0.91432 0.92244 0.85089 0.85463 0.91328 0.90384 0.94337 0.92827 0.93297 0.79654 0.94146 0.89773 0.92486 0.89113 0.86314 0.86035 0.84605 0.84715 0.84276 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.19 127.77 1.30 2.90 16 2 N -0.62 -12.51 2.50 -726.54 -1.81 -14.32 16 3 C 0.11 1.87 3.99 85.63 0.34 2.21 16 4 C 0.49 12.54 7.77 87.66 0.68 13.22 16 5 O -0.58 -20.39 15.84 -3.01 -0.05 -20.44 16 6 N -0.61 -14.81 2.98 -819.01 -2.44 -17.25 16 7 C 0.12 3.57 6.43 86.36 0.56 4.12 16 8 C -0.14 -4.78 5.67 30.68 0.17 -4.61 16 9 C 0.17 6.24 2.73 45.03 0.12 6.36 16 10 N -0.74 -35.63 5.12 -322.76 -1.65 -37.28 16 11 C -0.23 -12.64 9.93 84.04 0.83 -11.80 16 12 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 13 C -0.08 -4.39 5.50 84.87 0.47 -3.92 16 14 N -0.97 -58.66 13.06 21.65 0.28 -58.37 16 15 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 18 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 19 C -0.13 -3.50 5.55 30.65 0.17 -3.33 16 20 C 0.11 2.11 6.34 86.34 0.55 2.66 16 21 C 0.21 4.53 6.55 38.21 0.25 4.78 16 22 C -0.21 -4.45 9.21 22.40 0.21 -4.25 16 23 C -0.08 -1.52 10.04 22.25 0.22 -1.30 16 24 C -0.19 -3.33 10.04 22.29 0.22 -3.11 16 25 C -0.08 -1.43 10.04 22.25 0.22 -1.21 16 26 C -0.21 -4.24 9.21 22.40 0.21 -4.03 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.14 6.20 -2.39 -0.01 1.13 16 29 H 0.06 1.08 8.07 -2.38 -0.02 1.06 16 30 H 0.13 1.61 7.62 -2.39 -0.02 1.59 16 31 H 0.13 1.62 5.99 -2.39 -0.01 1.61 16 32 H 0.07 2.23 7.00 -2.39 -0.02 2.21 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 37 H 0.37 19.45 7.80 -92.71 -0.72 18.73 16 38 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 42 H 0.12 1.30 5.93 -2.38 -0.01 1.28 16 43 H 0.12 2.27 6.14 -2.91 -0.02 2.26 16 44 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 46 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 47 H 0.13 2.23 6.14 -2.91 -0.02 2.21 16 Total: -1.00 -73.49 375.82 3.13 -70.36 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.25 Total: 30.85 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 6.53 Total: -1.29 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -5.62 Total: -127.23 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.49 3.13 -70.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997399450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.163 kcal (2) G-P(sol) polarization free energy of solvation -73.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds