Wall clock time and date at job start Tue Mar 31 2020 11:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34778 * 119.99468 * 2 1 4 4 O 1.21622 * 119.99476 * 184.52933 * 3 2 1 5 5 C 1.47265 * 120.00252 * 4.52452 * 3 2 1 6 6 C 1.46751 * 126.96766 * 324.13306 * 5 3 2 7 7 C 1.34503 * 106.35912 * 179.97438 * 6 5 3 8 8 N 1.36424 * 109.01549 * 359.97438 * 7 6 5 9 9 C 1.35213 * 109.89855 * 0.02562 * 8 7 6 10 10 C 1.50995 * 124.54504 * 179.97438 * 9 8 7 11 11 C 1.53397 * 108.25245 * 344.31675 * 10 9 8 12 12 C 1.53162 * 109.04295 * 48.46828 * 11 10 9 13 13 C 1.47018 * 126.00784 * 180.02562 * 8 7 6 14 14 C 1.46494 * 120.00289 * 179.97438 * 2 1 3 15 15 C 1.53785 * 113.61620 * 39.13498 * 14 2 1 16 16 C 1.53955 * 87.01949 * 220.05014 * 15 14 2 17 17 N 1.46500 * 113.73907 * 139.94607 * 16 15 14 18 18 C 1.36939 * 120.00151 * 107.40577 * 17 16 15 19 19 H 1.08000 * 119.99598 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99960 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99661 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00300 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46727 * 90.00153 * 22 20 18 24 24 H 1.48494 * 109.47151 * 210.00651 * 22 20 18 25 25 H 1.48496 * 109.46769 * 330.00624 * 22 20 18 26 26 C 1.53779 * 87.11232 * 25.36102 * 16 15 14 27 27 H 1.08996 * 109.46649 * 84.85716 * 1 2 3 28 28 H 1.09004 * 109.46576 * 204.85410 * 1 2 3 29 29 H 1.08994 * 109.47330 * 324.85104 * 1 2 3 30 30 H 1.07998 * 126.82184 * 359.96760 * 6 5 3 31 31 H 1.08006 * 125.48760 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.70765 * 224.63130 * 10 9 8 33 33 H 1.08994 * 109.70918 * 104.00972 * 10 9 8 34 34 H 1.08999 * 109.54358 * 288.59710 * 11 10 9 35 35 H 1.09002 * 109.53969 * 168.33715 * 11 10 9 36 36 H 1.08998 * 109.46179 * 50.44341 * 12 11 10 37 37 H 1.09003 * 109.45893 * 170.41132 * 12 11 10 38 38 H 1.08995 * 109.56592 * 42.57220 * 13 8 7 39 39 H 1.08996 * 109.56273 * 282.22455 * 13 8 7 40 40 H 1.09002 * 112.85412 * 170.33454 * 14 2 1 41 41 H 1.09000 * 113.60851 * 334.57109 * 15 14 2 42 42 H 1.08996 * 113.61465 * 105.46738 * 15 14 2 43 43 H 1.08998 * 113.53774 * 270.81096 * 16 15 14 44 44 H 0.96996 * 119.99810 * 287.39535 * 17 16 15 45 45 H 0.96997 * 119.99290 * 179.97438 * 21 20 18 46 46 H 1.08999 * 113.61174 * 220.08639 * 26 16 15 47 47 H 1.09004 * 113.61188 * 89.18776 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3522 1.1689 -0.0832 5 6 1.4059 2.4406 0.1006 6 6 0.0982 2.7549 -0.4865 7 6 -0.1780 4.0245 -0.1386 8 7 0.8506 4.5133 0.6125 9 6 1.8043 3.5661 0.7588 10 6 3.0882 3.7558 1.5306 11 6 3.2944 5.2587 1.7581 12 6 1.9945 5.8659 2.2941 13 6 0.9347 5.8634 1.1885 14 6 2.1976 -1.2686 0.0006 15 6 1.5592 -2.3491 -0.8883 16 6 1.9076 -3.3556 0.2234 17 7 0.8616 -4.3522 0.4657 18 6 1.0454 -5.6489 0.0656 19 1 1.9613 -5.9367 -0.4290 20 6 0.0539 -6.5931 0.2947 21 7 0.2305 -7.8393 -0.0904 22 14 -1.5306 -6.0951 1.1494 23 1 -2.5248 -5.6612 0.1352 24 1 -2.0693 -7.2531 1.9071 25 1 -1.2572 -4.9751 2.0854 26 6 1.8676 -2.1700 1.2020 27 1 -0.3632 0.0921 -1.0235 28 1 -0.3633 -0.9326 0.4320 29 1 -0.3634 0.8402 0.5916 30 1 -0.5197 2.0974 -1.0800 31 1 -1.0703 4.5690 -0.4102 32 1 3.9239 3.3527 0.9585 33 1 3.0189 3.2447 2.4907 34 1 3.5588 5.7374 0.8153 35 1 4.0941 5.4113 2.4829 36 1 1.6395 5.2761 3.1392 37 1 2.1787 6.8903 2.6181 38 1 -0.0315 6.1416 1.6091 39 1 1.2151 6.5747 0.4117 40 1 3.2668 -1.1402 -0.1681 41 1 0.4875 -2.2155 -1.0362 42 1 2.0977 -2.5223 -1.8199 43 1 2.8975 -3.7987 0.1147 44 1 0.0388 -4.0936 0.9097 45 1 -0.4622 -8.4991 0.0701 46 1 2.6547 -2.1990 1.9554 47 1 0.8804 -1.9875 1.6266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998915273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:04 Heat of formation + Delta-G solvation = 51.440681 kcal Electronic energy + Delta-G solvation = -26622.931177 eV Core-core repulsion = 23000.534844 eV Total energy + Delta-G solvation = -3622.396334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81267 -39.76207 -37.80504 -36.29757 -34.67371 -33.15333 -32.68752 -30.55117 -29.69066 -28.06769 -26.91496 -25.17138 -24.79745 -24.46285 -23.02094 -21.55614 -21.18691 -19.70765 -18.99359 -18.33653 -17.44769 -17.26393 -16.42951 -16.10105 -15.48186 -15.09516 -14.71669 -14.65205 -14.57947 -14.24050 -14.09596 -13.91225 -13.66864 -13.12980 -13.00475 -12.84439 -12.67388 -12.29888 -12.14165 -11.97650 -11.82500 -11.70723 -11.65874 -11.50933 -11.35819 -11.18958 -10.96784 -10.61758 -10.41831 -10.11422 -10.03539 -9.63656 -9.50651 -8.88853 -8.69873 -8.41147 -8.20210 -7.25501 -5.76805 -3.12318 1.77398 2.30419 2.51728 3.25604 3.37125 3.39459 3.44983 3.48560 4.04657 4.19152 4.29899 4.45730 4.58773 4.69004 4.79589 4.89687 4.93714 5.01139 5.13126 5.18833 5.22236 5.27815 5.30881 5.35781 5.39138 5.44509 5.49860 5.66977 5.67995 5.70043 5.76013 5.80923 5.82486 5.86217 5.97085 6.17989 6.23822 6.29913 6.46623 6.56761 6.63533 6.82861 6.89400 7.02725 7.07170 7.69106 8.00141 8.42915 8.45839 9.20494 9.92981 10.12971 11.41487 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.002644 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.289298 B =10586.096236 C =11019.021853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.594 5.594 3 C 0.591 3.409 4 O -0.554 6.554 5 C -0.225 4.225 6 C -0.168 4.168 7 C -0.018 4.018 8 N -0.446 5.446 9 C 0.099 3.901 10 C -0.061 4.061 11 C -0.125 4.125 12 C -0.136 4.136 13 C 0.104 3.896 14 C 0.119 3.881 15 C -0.174 4.174 16 C 0.175 3.825 17 N -0.735 5.735 18 C -0.246 4.246 19 H 0.092 0.908 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.166 4.166 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.164 0.836 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.362 0.638 45 H 0.259 0.741 46 H 0.066 0.934 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 32.307 3.870 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.325 5.325 3 C 0.381 3.619 4 O -0.433 6.433 5 C -0.234 4.234 6 C -0.192 4.192 7 C -0.144 4.144 8 N -0.124 5.124 9 C -0.016 4.016 10 C -0.099 4.099 11 C -0.163 4.163 12 C -0.174 4.174 13 C -0.017 4.017 14 C 0.016 3.984 15 C -0.216 4.216 16 C 0.063 3.937 17 N -0.374 5.374 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.192 4.192 21 N -0.581 5.581 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.206 4.206 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.166 0.834 31 H 0.182 0.818 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.195 0.805 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.737 32.380 3.868 32.618 hybrid contribution -1.619 0.266 0.456 1.703 sum -0.882 32.646 4.323 32.943 Atomic orbital electron populations 1.21940 0.79916 1.03245 1.01489 1.47630 1.06799 1.05541 1.72500 1.17451 0.86315 0.82730 0.75426 1.90718 1.13832 1.87457 1.51303 1.19983 0.98313 0.94551 1.10599 1.22181 0.96080 0.95727 1.05228 1.21622 0.94521 0.96069 1.02221 1.43882 1.15941 1.11368 1.41187 1.20171 0.92227 0.87954 1.01279 1.20508 0.93334 0.96293 0.99732 1.21677 0.97214 0.95431 1.01987 1.21893 0.95096 1.02777 0.97647 1.22046 1.01172 0.81683 0.96829 1.22546 0.97520 0.80417 0.97951 1.24300 1.01073 0.96604 0.99624 1.21360 0.93585 0.86704 0.92019 1.42706 1.17092 1.06956 1.70654 1.19155 1.03233 0.83520 1.31686 0.89035 1.24697 0.98186 0.95384 1.00925 1.69707 1.34556 1.01604 1.52192 0.86550 0.84871 0.77441 0.79693 1.21066 1.21738 1.20319 1.23949 1.01746 0.97304 0.97607 0.92790 0.90877 0.90606 0.83404 0.81842 0.87976 0.89943 0.91279 0.90365 0.90653 0.89552 0.89346 0.90035 0.86615 0.90073 0.91729 0.89484 0.80537 0.93055 0.91492 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 7.73 59.85 0.46 1.40 16 2 N -0.59 -8.80 3.08 -174.33 -0.54 -9.34 16 3 C 0.59 9.35 7.49 -12.59 -0.09 9.25 16 4 O -0.55 -10.23 15.40 5.26 0.08 -10.15 16 5 C -0.22 -2.98 5.49 -103.48 -0.57 -3.55 16 6 C -0.17 -1.81 8.75 -37.46 -0.33 -2.14 16 7 C -0.02 -0.16 11.40 -16.83 -0.19 -0.35 16 8 N -0.45 -3.99 3.11 -111.92 -0.35 -4.34 16 9 C 0.10 1.13 6.56 -81.64 -0.54 0.60 16 10 C -0.06 -0.59 5.82 -27.53 -0.16 -0.75 16 11 C -0.13 -0.80 5.98 -26.44 -0.16 -0.95 16 12 C -0.14 -0.65 5.92 -26.57 -0.16 -0.81 16 13 C 0.10 0.54 6.90 -3.68 -0.03 0.52 16 14 C 0.12 1.90 4.22 -67.12 -0.28 1.62 16 15 C -0.17 -2.99 7.31 -25.83 -0.19 -3.17 16 16 C 0.18 3.39 4.48 -67.03 -0.30 3.09 16 17 N -0.73 -17.30 5.21 -52.55 -0.27 -17.58 16 18 C -0.25 -6.93 10.45 -15.06 -0.16 -7.09 16 19 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 22 Si 0.88 21.99 27.74 -169.99 -4.71 17.27 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 26 C -0.17 -2.73 7.35 -25.92 -0.19 -2.92 16 27 H 0.05 0.60 7.36 -51.93 -0.38 0.22 16 28 H 0.07 0.92 6.14 -51.93 -0.32 0.60 16 29 H 0.08 0.83 5.82 -51.93 -0.30 0.53 16 30 H 0.15 1.40 6.41 -52.49 -0.34 1.06 16 31 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.10 1.18 7.30 -51.93 -0.38 0.80 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.12 1.94 7.20 -51.93 -0.37 1.56 16 41 H 0.08 1.39 6.69 -51.93 -0.35 1.04 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 44 H 0.36 8.32 5.79 -40.82 -0.24 8.08 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.08 1.27 6.87 -51.93 -0.36 0.92 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -34.65 365.92 -9.75 -44.39 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.27 Total: 8.04 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.97 Total: -5.25 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.38 Total: -59.83 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.65 -9.75 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998915273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.834 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds