Wall clock time and date at job start Tue Mar 31 2020 11:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34778 * 119.99468 * 2 1 4 4 O 1.21622 * 119.99476 * 184.52933 * 3 2 1 5 5 C 1.47265 * 120.00252 * 4.52452 * 3 2 1 6 6 C 1.46751 * 126.96766 * 324.13306 * 5 3 2 7 7 C 1.34503 * 106.35912 * 179.97438 * 6 5 3 8 8 N 1.36424 * 109.01549 * 359.97438 * 7 6 5 9 9 C 1.35213 * 109.89855 * 0.02562 * 8 7 6 10 10 C 1.50995 * 124.54504 * 179.97438 * 9 8 7 11 11 C 1.53397 * 108.25245 * 344.31675 * 10 9 8 12 12 C 1.53162 * 109.04295 * 48.46828 * 11 10 9 13 13 C 1.47018 * 126.00784 * 180.02562 * 8 7 6 14 14 C 1.46494 * 120.00289 * 179.97438 * 2 1 3 15 15 C 1.53785 * 113.61620 * 39.13498 * 14 2 1 16 16 C 1.53955 * 87.01949 * 220.05014 * 15 14 2 17 17 N 1.46500 * 113.73907 * 139.94607 * 16 15 14 18 18 C 1.36939 * 120.00151 * 107.40577 * 17 16 15 19 19 H 1.08000 * 119.99598 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99960 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99661 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00300 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46727 * 90.00153 * 22 20 18 24 24 H 1.48494 * 109.47151 * 210.00651 * 22 20 18 25 25 H 1.48496 * 109.46769 * 330.00624 * 22 20 18 26 26 C 1.53779 * 87.11232 * 25.36102 * 16 15 14 27 27 H 1.08996 * 109.46649 * 84.85716 * 1 2 3 28 28 H 1.09004 * 109.46576 * 204.85410 * 1 2 3 29 29 H 1.08994 * 109.47330 * 324.85104 * 1 2 3 30 30 H 1.07998 * 126.82184 * 359.96760 * 6 5 3 31 31 H 1.08006 * 125.48760 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.70765 * 224.63130 * 10 9 8 33 33 H 1.08994 * 109.70918 * 104.00972 * 10 9 8 34 34 H 1.08999 * 109.54358 * 288.59710 * 11 10 9 35 35 H 1.09002 * 109.53969 * 168.33715 * 11 10 9 36 36 H 1.08998 * 109.46179 * 50.44341 * 12 11 10 37 37 H 1.09003 * 109.45893 * 170.41132 * 12 11 10 38 38 H 1.08995 * 109.56592 * 42.57220 * 13 8 7 39 39 H 1.08996 * 109.56273 * 282.22455 * 13 8 7 40 40 H 1.09002 * 112.85412 * 170.33454 * 14 2 1 41 41 H 1.09000 * 113.60851 * 334.57109 * 15 14 2 42 42 H 1.08996 * 113.61465 * 105.46738 * 15 14 2 43 43 H 1.08998 * 113.53774 * 270.81096 * 16 15 14 44 44 H 0.96996 * 119.99810 * 287.39535 * 17 16 15 45 45 H 0.96997 * 119.99290 * 179.97438 * 21 20 18 46 46 H 1.08999 * 113.61174 * 220.08639 * 26 16 15 47 47 H 1.09004 * 113.61188 * 89.18776 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3522 1.1689 -0.0832 5 6 1.4059 2.4406 0.1006 6 6 0.0982 2.7549 -0.4865 7 6 -0.1780 4.0245 -0.1386 8 7 0.8506 4.5133 0.6125 9 6 1.8043 3.5661 0.7588 10 6 3.0882 3.7558 1.5306 11 6 3.2944 5.2587 1.7581 12 6 1.9945 5.8659 2.2941 13 6 0.9347 5.8634 1.1885 14 6 2.1976 -1.2686 0.0006 15 6 1.5592 -2.3491 -0.8883 16 6 1.9076 -3.3556 0.2234 17 7 0.8616 -4.3522 0.4657 18 6 1.0454 -5.6489 0.0656 19 1 1.9613 -5.9367 -0.4290 20 6 0.0539 -6.5931 0.2947 21 7 0.2305 -7.8393 -0.0904 22 14 -1.5306 -6.0951 1.1494 23 1 -2.5248 -5.6612 0.1352 24 1 -2.0693 -7.2531 1.9071 25 1 -1.2572 -4.9751 2.0854 26 6 1.8676 -2.1700 1.2020 27 1 -0.3632 0.0921 -1.0235 28 1 -0.3633 -0.9326 0.4320 29 1 -0.3634 0.8402 0.5916 30 1 -0.5197 2.0974 -1.0800 31 1 -1.0703 4.5690 -0.4102 32 1 3.9239 3.3527 0.9585 33 1 3.0189 3.2447 2.4907 34 1 3.5588 5.7374 0.8153 35 1 4.0941 5.4113 2.4829 36 1 1.6395 5.2761 3.1392 37 1 2.1787 6.8903 2.6181 38 1 -0.0315 6.1416 1.6091 39 1 1.2151 6.5747 0.4117 40 1 3.2668 -1.1402 -0.1681 41 1 0.4875 -2.2155 -1.0362 42 1 2.0977 -2.5223 -1.8199 43 1 2.8975 -3.7987 0.1147 44 1 0.0388 -4.0936 0.9097 45 1 -0.4622 -8.4991 0.0701 46 1 2.6547 -2.1990 1.9554 47 1 0.8804 -1.9875 1.6266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998915273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:03 Heat of formation + Delta-G solvation = 29.944478 kcal Electronic energy + Delta-G solvation = -26623.863323 eV Core-core repulsion = 23000.534844 eV Total energy + Delta-G solvation = -3623.328479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.54873 -41.02153 -39.17082 -36.88847 -36.16040 -34.82102 -33.49593 -32.53022 -30.37709 -28.84063 -28.00270 -26.63111 -26.27910 -25.15614 -24.41621 -22.63209 -22.02308 -20.87321 -20.33930 -19.32749 -19.13411 -18.24026 -17.68898 -16.85893 -16.50927 -16.44905 -16.11071 -15.72464 -15.50576 -15.21704 -15.05622 -14.73138 -14.70730 -14.47193 -14.24546 -14.01831 -13.73225 -13.60296 -13.55801 -13.30108 -13.05579 -12.84433 -12.75242 -12.40568 -12.28109 -12.06118 -11.99621 -11.84903 -11.80715 -11.76838 -11.72798 -11.51795 -10.91814 -10.79602 -9.59617 -9.42814 -9.27912 -9.05493 -8.01191 -5.35186 0.85010 1.39033 1.43379 1.50554 1.55647 1.83927 2.20095 2.41241 2.50031 3.28275 3.58240 3.60925 3.73004 3.75590 3.80918 3.81432 3.86540 3.93167 4.13031 4.22216 4.28649 4.35638 4.38860 4.40745 4.44854 4.62618 4.73393 4.76935 4.81093 4.83385 4.83635 4.86620 4.95253 4.98419 5.01299 5.08267 5.11871 5.12602 5.24077 5.26140 5.41349 5.69199 5.78428 5.84399 6.14558 6.23298 6.41150 6.55495 7.08027 7.28124 7.83471 8.04419 9.20331 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.002644 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.289298 B =10586.096236 C =11019.021853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.595 5.595 3 C 0.585 3.415 4 O -0.593 6.593 5 C -0.261 4.261 6 C -0.186 4.186 7 C -0.005 4.005 8 N -0.442 5.442 9 C 0.090 3.910 10 C -0.063 4.063 11 C -0.121 4.121 12 C -0.132 4.132 13 C 0.095 3.905 14 C 0.130 3.870 15 C -0.162 4.162 16 C 0.158 3.842 17 N -0.736 5.736 18 C -0.235 4.235 19 H 0.056 0.944 20 C -0.067 4.067 21 N -0.985 5.985 22 Si 0.958 3.042 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.249 1.249 26 C -0.148 4.148 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.157 0.843 31 H 0.201 0.799 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.368 0.632 45 H 0.258 0.742 46 H 0.073 0.927 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 36.387 5.060 36.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.325 5.325 3 C 0.376 3.624 4 O -0.476 6.476 5 C -0.271 4.271 6 C -0.209 4.209 7 C -0.131 4.131 8 N -0.118 5.118 9 C -0.027 4.027 10 C -0.101 4.101 11 C -0.158 4.158 12 C -0.170 4.170 13 C -0.024 4.024 14 C 0.026 3.974 15 C -0.203 4.203 16 C 0.048 3.952 17 N -0.377 5.377 18 C -0.366 4.366 19 H 0.074 0.926 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.785 3.215 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.174 1.174 26 C -0.188 4.188 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.174 0.826 31 H 0.218 0.782 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.202 0.798 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.688 36.546 5.064 36.934 hybrid contribution -0.748 -0.929 0.032 1.193 sum -2.436 35.617 5.096 36.062 Atomic orbital electron populations 1.22099 0.78074 1.03769 1.02633 1.47671 1.07893 1.04731 1.72162 1.17947 0.86057 0.83795 0.74558 1.90684 1.15612 1.88088 1.53213 1.19987 0.99929 0.94039 1.13137 1.22332 0.95327 0.97096 1.06175 1.22187 0.95035 0.95495 1.00416 1.44203 1.15048 1.12162 1.40379 1.20339 0.93036 0.88230 1.01111 1.20482 0.91994 0.98825 0.98778 1.21665 0.98911 0.92791 1.02466 1.21905 0.93754 1.04112 0.97184 1.22425 1.02751 0.79808 0.97401 1.22230 0.97057 0.81060 0.97097 1.24129 1.01520 0.95868 0.98831 1.21588 0.92186 0.86830 0.94569 1.42627 1.18333 1.05883 1.70890 1.19098 1.01692 0.85576 1.30196 0.92612 1.25563 1.02391 0.95258 1.02573 1.69901 1.36008 1.03127 1.54488 0.85366 0.79737 0.77563 0.78869 1.20147 1.22445 1.17380 1.23791 1.02592 0.95121 0.97334 0.91534 0.90989 0.89154 0.82566 0.78178 0.90789 0.90401 0.91396 0.89149 0.91229 0.86686 0.86798 0.88490 0.87796 0.89380 0.92091 0.90639 0.79828 0.93359 0.90847 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.71 7.73 127.77 0.99 2.70 16 2 N -0.59 -17.27 3.08 -823.69 -2.54 -19.81 16 3 C 0.58 18.70 7.49 86.62 0.65 19.35 16 4 O -0.59 -22.87 15.40 -4.10 -0.06 -22.94 16 5 C -0.26 -6.77 5.49 -19.12 -0.11 -6.88 16 6 C -0.19 -3.61 8.75 23.64 0.21 -3.40 16 7 C 0.00 -0.07 11.40 83.12 0.95 0.88 16 8 N -0.44 -6.61 3.11 -508.00 -1.58 -8.19 16 9 C 0.09 1.98 6.56 41.69 0.27 2.25 16 10 C -0.06 -1.23 5.82 30.07 0.18 -1.05 16 11 C -0.12 -1.33 5.98 30.78 0.18 -1.14 16 12 C -0.13 -0.82 5.92 30.70 0.18 -0.64 16 13 C 0.10 0.62 6.90 86.33 0.60 1.21 16 14 C 0.13 4.12 4.22 45.52 0.19 4.31 16 15 C -0.16 -5.49 7.31 31.18 0.23 -5.26 16 16 C 0.16 6.12 4.48 45.58 0.20 6.32 16 17 N -0.74 -34.29 5.21 -320.17 -1.67 -35.96 16 18 C -0.23 -13.48 10.45 84.03 0.88 -12.60 16 19 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 21 N -0.98 -63.70 13.97 21.65 0.30 -63.40 16 22 Si 0.96 45.16 27.74 68.60 1.90 47.07 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 25 H -0.25 -10.49 6.52 99.48 0.65 -9.84 16 26 C -0.15 -4.74 7.35 31.12 0.23 -4.51 16 27 H 0.07 1.33 7.36 -2.39 -0.02 1.31 16 28 H 0.07 1.64 6.14 -2.38 -0.01 1.62 16 29 H 0.09 1.79 5.82 -2.39 -0.01 1.78 16 30 H 0.16 2.60 6.41 -2.91 -0.02 2.58 16 31 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16 32 H 0.07 1.84 7.30 -2.38 -0.02 1.82 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.55 8.11 -2.39 -0.02 0.53 16 37 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.10 3.58 7.20 -2.39 -0.02 3.56 16 41 H 0.09 2.88 6.69 -2.39 -0.02 2.87 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.08 3.07 8.10 -2.39 -0.02 3.05 16 44 H 0.37 16.16 5.79 -92.71 -0.54 15.62 16 45 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 46 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.09 2.69 6.87 -2.38 -0.02 2.68 16 Total: -1.00 -78.25 365.92 3.03 -75.22 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.38 Total: 29.95 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 6.29 Total: -1.94 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -5.49 Total: -127.36 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.06 Total: -22.94 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.07 kcal Total: -78.25 3.03 -75.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998915273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.165 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds