Wall clock time and date at job start Tue Mar 31 2020 11:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 120.00309 * 2 1 4 4 O 1.21621 * 120.00179 * 181.09213 * 3 2 1 5 5 C 1.47264 * 119.99700 * 1.08831 * 3 2 1 6 6 C 1.46691 * 126.94248 * 348.74746 * 5 3 2 7 7 C 1.34485 * 106.33035 * 179.97438 * 6 5 3 8 8 N 1.36452 * 108.85900 * 359.97438 * 7 6 5 9 9 H 0.97001 * 124.85296 * 179.97438 * 8 7 6 10 10 C 1.34659 * 110.29636 * 359.97438 * 8 7 6 11 11 C 1.50693 * 125.80159 * 179.97438 * 10 8 7 12 12 C 1.53784 * 113.61450 * 37.52149 * 11 10 8 13 13 C 1.53773 * 87.08304 * 220.01677 * 12 11 10 14 14 C 1.53777 * 87.08339 * 25.43217 * 13 12 11 15 15 C 1.46499 * 120.00111 * 179.97438 * 2 1 3 16 16 C 1.53783 * 113.61387 * 39.13843 * 15 2 1 17 17 C 1.53957 * 87.01871 * 220.05220 * 16 15 2 18 18 N 1.46497 * 113.53276 * 270.80680 * 17 16 15 19 19 C 1.36940 * 120.00371 * 252.49603 * 18 17 16 20 20 H 1.08002 * 119.99369 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00039 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00460 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46968 * 60.00254 * 23 21 19 25 25 H 1.48498 * 109.47136 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47136 * 300.00283 * 23 21 19 27 27 C 1.53774 * 87.11213 * 25.35889 * 17 16 15 28 28 H 1.09000 * 109.47095 * 83.38572 * 1 2 3 29 29 H 1.08994 * 109.47189 * 203.39025 * 1 2 3 30 30 H 1.09005 * 109.46896 * 323.39018 * 1 2 3 31 31 H 1.07997 * 126.83480 * 0.02562 * 6 5 3 32 32 H 1.08002 * 125.57334 * 180.26196 * 7 6 5 33 33 H 1.08996 * 112.85200 * 168.82647 * 11 10 8 34 34 H 1.08999 * 113.61450 * 334.57307 * 12 11 10 35 35 H 1.09006 * 113.61321 * 105.46501 * 12 11 10 36 36 H 1.08994 * 113.61946 * 270.88436 * 13 12 11 37 37 H 1.09004 * 113.68951 * 139.99158 * 13 12 11 38 38 H 1.08999 * 113.61948 * 220.01696 * 14 13 12 39 39 H 1.09007 * 113.68861 * 89.12227 * 14 13 12 40 40 H 1.08993 * 112.85086 * 170.33344 * 15 2 1 41 41 H 1.09011 * 113.61106 * 334.56711 * 16 15 2 42 42 H 1.08990 * 113.61623 * 105.46983 * 16 15 2 43 43 H 1.09007 * 113.74336 * 139.94800 * 17 16 15 44 44 H 0.96999 * 119.99803 * 72.50158 * 18 17 16 45 45 H 0.96996 * 120.00661 * 179.97438 * 22 21 19 46 46 H 1.09001 * 113.61878 * 220.08719 * 27 17 16 47 47 H 1.09007 * 113.61178 * 89.19225 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3550 1.1673 -0.0201 5 6 1.4028 2.4424 0.0242 6 6 -0.0374 2.6331 -0.1791 7 6 -0.2630 3.9543 -0.0699 8 7 0.9204 4.5844 0.1838 9 1 1.0243 5.5413 0.3042 10 6 1.9236 3.6881 0.2429 11 6 3.3738 4.0040 0.5034 12 6 3.5844 5.1278 1.5319 13 6 4.7237 5.6320 0.6306 14 6 3.9955 4.9486 -0.5388 15 6 2.1975 -1.2687 0.0006 16 6 1.5591 -2.3490 -0.8883 17 6 1.9073 -3.3556 0.2233 18 7 3.2377 -3.9514 0.0772 19 6 3.3638 -5.2577 -0.3136 20 1 2.4824 -5.8487 -0.5145 21 6 4.6244 -5.8220 -0.4526 22 7 5.6985 -5.1016 -0.2083 23 14 4.7963 -7.6043 -0.9850 24 1 4.1736 -7.7841 -2.3210 25 1 6.2356 -7.9627 -1.0570 26 1 4.1165 -8.4830 0.0003 27 6 1.8674 -2.1701 1.2019 28 1 -0.3633 0.1184 -1.0208 29 1 -0.3633 -0.9432 0.4079 30 1 -0.3633 0.8250 0.6129 31 1 -0.7706 1.8651 -0.3763 32 1 -1.2246 4.4373 -0.1627 33 1 3.9724 3.1142 0.6983 34 1 2.7443 5.8188 1.6017 35 1 3.9225 4.7714 2.5050 36 1 5.6920 5.1881 0.8612 37 1 4.7657 6.7178 0.5440 38 1 4.6655 4.4476 -1.2375 39 1 3.2676 5.5897 -1.0361 40 1 3.2666 -1.1402 -0.1681 41 1 0.4873 -2.2155 -1.0363 42 1 2.0976 -2.5223 -1.8199 43 1 1.1290 -4.0972 0.4036 44 1 4.0293 -3.4205 0.2573 45 1 6.5794 -5.4960 -0.3050 46 1 2.6545 -2.1991 1.9554 47 1 0.8802 -1.9875 1.6266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999408041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:08 Heat of formation + Delta-G solvation = 82.657965 kcal Electronic energy + Delta-G solvation = -26599.854470 eV Core-core repulsion = 22978.811820 eV Total energy + Delta-G solvation = -3621.042651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64277 -39.60204 -38.41278 -37.63184 -34.70635 -32.97589 -31.08689 -29.92349 -29.60360 -27.04611 -25.87847 -25.56015 -24.99890 -24.36372 -23.17558 -21.33865 -21.22291 -19.71428 -18.59906 -18.13987 -17.95021 -17.25863 -16.14159 -15.73352 -15.59724 -15.24155 -14.79229 -14.67271 -14.29144 -13.98203 -13.86152 -13.65193 -12.99193 -12.95839 -12.80335 -12.64613 -12.58424 -12.44293 -12.33169 -11.88770 -11.80846 -11.40141 -11.31606 -10.93866 -10.80934 -10.68856 -10.68259 -10.53102 -10.14516 -10.12548 -9.69549 -9.58698 -9.34036 -8.91408 -8.84090 -8.39034 -8.07495 -6.94219 -5.73141 -3.03118 1.74147 2.31055 2.95504 3.45110 3.47141 3.51110 3.52635 3.68254 4.32867 4.40621 4.45631 4.61208 4.72818 4.78527 4.93136 5.03438 5.27242 5.28716 5.29586 5.30744 5.33531 5.42275 5.50802 5.53562 5.57466 5.62760 5.68079 5.71658 5.77222 5.80288 5.83074 5.95801 6.00841 6.12178 6.20186 6.26597 6.37904 6.54900 6.62781 6.70830 6.80976 6.87381 6.94121 7.18171 7.27260 7.73565 7.83274 8.45107 8.61299 9.55529 10.13183 10.47388 11.48967 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.002779 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.437042 B =10074.806521 C =11178.479759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.596 5.596 3 C 0.585 3.415 4 O -0.550 6.550 5 C -0.222 4.222 6 C -0.183 4.183 7 C -0.022 4.022 8 N -0.552 5.552 9 H 0.411 0.589 10 C 0.116 3.884 11 C -0.054 4.054 12 C -0.139 4.139 13 C -0.140 4.140 14 C -0.132 4.132 15 C 0.127 3.873 16 C -0.182 4.182 17 C 0.172 3.828 18 N -0.706 5.706 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.168 4.168 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.136 0.864 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.069 0.931 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.209 24.544 2.121 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.327 5.327 3 C 0.375 3.625 4 O -0.429 6.429 5 C -0.232 4.232 6 C -0.206 4.206 7 C -0.149 4.149 8 N -0.147 5.147 9 H 0.248 0.752 10 C -0.002 4.002 11 C -0.072 4.072 12 C -0.177 4.177 13 C -0.177 4.177 14 C -0.170 4.170 15 C 0.025 3.975 16 C -0.224 4.224 17 C 0.059 3.941 18 N -0.344 5.344 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.209 4.209 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.179 0.821 32 H 0.184 0.816 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.573 24.441 2.071 27.563 hybrid contribution 0.104 -0.294 -0.307 0.438 sum -12.468 24.147 1.765 27.233 Atomic orbital electron populations 1.22336 0.80681 1.03393 1.01346 1.47671 1.06465 1.05850 1.72691 1.17432 0.86473 0.82797 0.75783 1.90720 1.13477 1.87230 1.51504 1.20228 0.93819 0.92389 1.16788 1.22793 0.94806 0.95510 1.07532 1.21782 0.89634 0.93418 1.10111 1.41510 1.06873 1.09377 1.56930 0.75227 1.20033 0.90299 0.88126 1.01747 1.21577 0.89222 0.99627 0.96819 1.23003 0.98668 0.97437 0.98577 1.22816 0.98312 1.00231 0.96353 1.22945 0.99603 0.97660 0.96769 1.22698 0.97805 0.79690 0.97337 1.24331 0.99452 0.97934 1.00695 1.20944 0.89767 0.91288 0.92088 1.42211 1.01067 1.11009 1.80142 1.19226 0.92304 0.87721 1.38298 0.91028 1.24779 0.95433 0.98280 1.02313 1.69661 0.97181 1.35868 1.55062 0.86248 0.76603 0.84745 0.78447 1.21233 1.21698 1.21233 1.23958 1.01297 0.97766 0.97842 0.92837 0.91056 0.89707 0.82131 0.81559 0.84622 0.91003 0.90699 0.89508 0.91392 0.90489 0.90769 0.86467 0.91091 0.91064 0.91533 0.77913 0.93348 0.91195 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 7.46 59.85 0.45 1.19 16 2 N -0.60 -9.36 3.08 -174.34 -0.54 -9.90 16 3 C 0.58 9.98 7.65 -12.59 -0.10 9.89 16 4 O -0.55 -11.18 14.22 5.26 0.07 -11.11 16 5 C -0.22 -3.04 6.06 -103.35 -0.63 -3.66 16 6 C -0.18 -1.87 8.83 -37.50 -0.33 -2.20 16 7 C -0.02 -0.18 11.89 -16.82 -0.20 -0.38 16 8 N -0.55 -4.48 5.72 -9.11 -0.05 -4.53 16 9 H 0.41 2.11 8.21 -40.82 -0.34 1.77 16 10 C 0.12 1.34 6.22 -81.89 -0.51 0.83 16 11 C -0.05 -0.60 3.88 -90.96 -0.35 -0.95 16 12 C -0.14 -1.15 7.62 -25.92 -0.20 -1.35 16 13 C -0.14 -1.09 8.08 -25.93 -0.21 -1.30 16 14 C -0.13 -1.23 7.63 -25.92 -0.20 -1.43 16 15 C 0.13 2.32 4.09 -67.12 -0.27 2.05 16 16 C -0.18 -3.30 7.30 -25.82 -0.19 -3.49 16 17 C 0.17 3.51 4.57 -67.03 -0.31 3.20 16 18 N -0.71 -18.22 5.31 -52.55 -0.28 -18.50 16 19 C -0.24 -6.89 9.97 -15.06 -0.15 -7.04 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 23 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C -0.17 -2.98 7.34 -25.92 -0.19 -3.17 16 28 H 0.05 0.55 7.64 -51.93 -0.40 0.15 16 29 H 0.07 0.76 6.09 -51.93 -0.32 0.44 16 30 H 0.08 0.83 4.84 -51.93 -0.25 0.58 16 31 H 0.16 1.34 4.86 -52.49 -0.26 1.09 16 32 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.14 1.95 6.12 -51.93 -0.32 1.64 16 34 H 0.07 0.47 7.21 -51.93 -0.37 0.09 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.12 2.55 7.21 -51.93 -0.37 2.17 16 41 H 0.07 1.08 6.66 -51.92 -0.35 0.73 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 44 H 0.39 10.73 7.90 -40.82 -0.32 10.41 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.08 1.15 6.92 -51.92 -0.36 0.79 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -34.24 369.23 -10.00 -44.25 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.99 Total: 12.84 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -3.48 Total: -8.25 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.14 Total: -60.93 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.11 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.24 -10.00 -44.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999408041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.904 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds