Wall clock time and date at job start Tue Mar 31 2020 11:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 120.00309 * 2 1 4 4 O 1.21621 * 120.00179 * 181.09213 * 3 2 1 5 5 C 1.47264 * 119.99700 * 1.08831 * 3 2 1 6 6 C 1.46691 * 126.94248 * 348.74746 * 5 3 2 7 7 C 1.34485 * 106.33035 * 179.97438 * 6 5 3 8 8 N 1.36452 * 108.85900 * 359.97438 * 7 6 5 9 9 H 0.97001 * 124.85296 * 179.97438 * 8 7 6 10 10 C 1.34659 * 110.29636 * 359.97438 * 8 7 6 11 11 C 1.50693 * 125.80159 * 179.97438 * 10 8 7 12 12 C 1.53784 * 113.61450 * 37.52149 * 11 10 8 13 13 C 1.53773 * 87.08304 * 220.01677 * 12 11 10 14 14 C 1.53777 * 87.08339 * 25.43217 * 13 12 11 15 15 C 1.46499 * 120.00111 * 179.97438 * 2 1 3 16 16 C 1.53783 * 113.61387 * 39.13843 * 15 2 1 17 17 C 1.53957 * 87.01871 * 220.05220 * 16 15 2 18 18 N 1.46497 * 113.53276 * 270.80680 * 17 16 15 19 19 C 1.36940 * 120.00371 * 252.49603 * 18 17 16 20 20 H 1.08002 * 119.99369 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00039 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00460 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46968 * 60.00254 * 23 21 19 25 25 H 1.48498 * 109.47136 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47136 * 300.00283 * 23 21 19 27 27 C 1.53774 * 87.11213 * 25.35889 * 17 16 15 28 28 H 1.09000 * 109.47095 * 83.38572 * 1 2 3 29 29 H 1.08994 * 109.47189 * 203.39025 * 1 2 3 30 30 H 1.09005 * 109.46896 * 323.39018 * 1 2 3 31 31 H 1.07997 * 126.83480 * 0.02562 * 6 5 3 32 32 H 1.08002 * 125.57334 * 180.26196 * 7 6 5 33 33 H 1.08996 * 112.85200 * 168.82647 * 11 10 8 34 34 H 1.08999 * 113.61450 * 334.57307 * 12 11 10 35 35 H 1.09006 * 113.61321 * 105.46501 * 12 11 10 36 36 H 1.08994 * 113.61946 * 270.88436 * 13 12 11 37 37 H 1.09004 * 113.68951 * 139.99158 * 13 12 11 38 38 H 1.08999 * 113.61948 * 220.01696 * 14 13 12 39 39 H 1.09007 * 113.68861 * 89.12227 * 14 13 12 40 40 H 1.08993 * 112.85086 * 170.33344 * 15 2 1 41 41 H 1.09011 * 113.61106 * 334.56711 * 16 15 2 42 42 H 1.08990 * 113.61623 * 105.46983 * 16 15 2 43 43 H 1.09007 * 113.74336 * 139.94800 * 17 16 15 44 44 H 0.96999 * 119.99803 * 72.50158 * 18 17 16 45 45 H 0.96996 * 120.00661 * 179.97438 * 22 21 19 46 46 H 1.09001 * 113.61878 * 220.08719 * 27 17 16 47 47 H 1.09007 * 113.61178 * 89.19225 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3550 1.1673 -0.0201 5 6 1.4028 2.4424 0.0242 6 6 -0.0374 2.6331 -0.1791 7 6 -0.2630 3.9543 -0.0699 8 7 0.9204 4.5844 0.1838 9 1 1.0243 5.5413 0.3042 10 6 1.9236 3.6881 0.2429 11 6 3.3738 4.0040 0.5034 12 6 3.5844 5.1278 1.5319 13 6 4.7237 5.6320 0.6306 14 6 3.9955 4.9486 -0.5388 15 6 2.1975 -1.2687 0.0006 16 6 1.5591 -2.3490 -0.8883 17 6 1.9073 -3.3556 0.2233 18 7 3.2377 -3.9514 0.0772 19 6 3.3638 -5.2577 -0.3136 20 1 2.4824 -5.8487 -0.5145 21 6 4.6244 -5.8220 -0.4526 22 7 5.6985 -5.1016 -0.2083 23 14 4.7963 -7.6043 -0.9850 24 1 4.1736 -7.7841 -2.3210 25 1 6.2356 -7.9627 -1.0570 26 1 4.1165 -8.4830 0.0003 27 6 1.8674 -2.1701 1.2019 28 1 -0.3633 0.1184 -1.0208 29 1 -0.3633 -0.9432 0.4079 30 1 -0.3633 0.8250 0.6129 31 1 -0.7706 1.8651 -0.3763 32 1 -1.2246 4.4373 -0.1627 33 1 3.9724 3.1142 0.6983 34 1 2.7443 5.8188 1.6017 35 1 3.9225 4.7714 2.5050 36 1 5.6920 5.1881 0.8612 37 1 4.7657 6.7178 0.5440 38 1 4.6655 4.4476 -1.2375 39 1 3.2676 5.5897 -1.0361 40 1 3.2666 -1.1402 -0.1681 41 1 0.4873 -2.2155 -1.0363 42 1 2.0976 -2.5223 -1.8199 43 1 1.1290 -4.0972 0.4036 44 1 4.0293 -3.4205 0.2573 45 1 6.5794 -5.4960 -0.3050 46 1 2.6545 -2.1991 1.9554 47 1 0.8802 -1.9875 1.6266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999408041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:07 Heat of formation + Delta-G solvation = 60.191979 kcal Electronic energy + Delta-G solvation = -26600.828669 eV Core-core repulsion = 22978.811820 eV Total energy + Delta-G solvation = -3622.016849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.45289 -40.94578 -39.16821 -39.07475 -36.19074 -34.82746 -32.24542 -31.37561 -30.68738 -28.08127 -26.78223 -26.58653 -26.47085 -25.85345 -24.75652 -22.62378 -21.96224 -20.46752 -19.84262 -19.54817 -19.28643 -18.68772 -17.52309 -16.81524 -16.66502 -16.48845 -16.31378 -15.71702 -15.39652 -15.33566 -15.13042 -14.73855 -14.50130 -14.32826 -13.96229 -13.63688 -13.46334 -13.35851 -13.32015 -13.24245 -13.17726 -13.05491 -12.72716 -12.49552 -12.23329 -12.14877 -11.81156 -11.67026 -11.64963 -11.42277 -11.28596 -11.18400 -10.89670 -10.64406 -9.73499 -9.51494 -9.05198 -8.99186 -7.94749 -5.25665 0.76182 1.46908 1.51302 1.57277 1.60557 2.08857 2.44954 2.55112 2.55904 3.36482 3.58515 3.62964 3.67828 3.75324 3.87243 3.89037 3.97625 3.99371 4.19249 4.27627 4.31637 4.37434 4.43147 4.54259 4.65423 4.73502 4.74657 4.78604 4.79555 4.82332 4.91999 4.99650 5.02548 5.03359 5.04926 5.08404 5.16526 5.23903 5.32137 5.36562 5.50153 5.53515 5.77932 5.85250 6.05759 6.26644 6.59992 6.72022 7.30670 7.36950 8.06401 8.29092 9.28808 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.002779 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.437042 B =10074.806521 C =11178.479759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.596 5.596 3 C 0.570 3.430 4 O -0.604 6.604 5 C -0.261 4.261 6 C -0.198 4.198 7 C 0.002 3.998 8 N -0.535 5.535 9 H 0.429 0.571 10 C 0.111 3.889 11 C -0.070 4.070 12 C -0.127 4.127 13 C -0.132 4.132 14 C -0.129 4.129 15 C 0.129 3.871 16 C -0.161 4.161 17 C 0.156 3.844 18 N -0.725 5.725 19 C -0.244 4.244 20 H 0.085 0.915 21 C -0.081 4.081 22 N -0.974 5.974 23 Si 0.980 3.020 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.273 1.273 27 C -0.148 4.148 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.180 0.820 32 H 0.213 0.787 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.041 0.959 43 H 0.081 0.919 44 H 0.370 0.630 45 H 0.251 0.749 46 H 0.047 0.953 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.520 26.531 2.166 31.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.326 5.326 3 C 0.363 3.637 4 O -0.487 6.487 5 C -0.271 4.271 6 C -0.221 4.221 7 C -0.126 4.126 8 N -0.131 5.131 9 H 0.269 0.731 10 C -0.009 4.009 11 C -0.089 4.089 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.167 4.167 15 C 0.025 3.975 16 C -0.202 4.202 17 C 0.045 3.955 18 N -0.362 5.362 19 C -0.376 4.376 20 H 0.103 0.897 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.808 3.192 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.199 1.199 27 C -0.188 4.188 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.197 0.803 32 H 0.230 0.770 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.201 0.799 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.994 26.458 2.120 31.517 hybrid contribution 1.362 -0.808 -0.320 1.616 sum -15.633 25.650 1.799 30.092 Atomic orbital electron populations 1.22682 0.77490 1.05068 1.03063 1.47716 1.08277 1.04357 1.72203 1.18164 0.86221 0.84398 0.74962 1.90691 1.15962 1.88081 1.53992 1.20183 0.95906 0.91265 1.19796 1.22995 0.93065 0.97337 1.08719 1.22464 0.90665 0.92671 1.06759 1.41495 1.06144 1.09929 1.55523 0.73123 1.19992 0.90868 0.88477 1.01544 1.21467 0.89138 0.99040 0.99281 1.22998 0.99661 0.96359 0.97424 1.22778 0.97598 1.01500 0.95069 1.22968 0.99759 0.97432 0.96567 1.22251 0.95804 0.81547 0.97901 1.24149 1.01427 0.96344 0.98299 1.21248 0.87637 0.92474 0.94109 1.42434 1.02681 1.10558 1.80527 1.19709 0.92687 0.88687 1.36491 0.89742 1.25695 0.95233 1.02800 1.03516 1.69857 0.97425 1.37797 1.57365 0.85121 0.76053 0.79576 0.78457 1.20198 1.22485 1.19902 1.23830 1.02616 0.95755 0.96588 0.91141 0.89685 0.87637 0.80348 0.77042 0.89138 0.88187 0.91391 0.90573 0.88830 0.92722 0.88699 0.91474 0.86890 0.94007 0.90054 0.79892 0.94061 0.93451 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 7.46 127.77 0.95 2.10 16 2 N -0.60 -18.86 3.08 -823.72 -2.54 -21.40 16 3 C 0.57 20.53 7.65 86.62 0.66 21.19 16 4 O -0.60 -27.30 14.22 -4.10 -0.06 -27.36 16 5 C -0.26 -7.06 6.06 -19.04 -0.12 -7.18 16 6 C -0.20 -3.44 8.83 23.62 0.21 -3.23 16 7 C 0.00 0.02 11.89 83.11 0.99 1.01 16 8 N -0.53 -6.83 5.72 -182.72 -1.04 -7.88 16 9 H 0.43 2.49 8.21 -92.71 -0.76 1.73 16 10 C 0.11 2.49 6.22 41.78 0.26 2.75 16 11 C -0.07 -1.64 3.88 -11.01 -0.04 -1.68 16 12 C -0.13 -1.98 7.62 31.12 0.24 -1.74 16 13 C -0.13 -1.97 8.08 31.12 0.25 -1.71 16 14 C -0.13 -2.43 7.63 31.12 0.24 -2.19 16 15 C 0.13 4.90 4.09 45.52 0.19 5.09 16 16 C -0.16 -5.79 7.30 31.18 0.23 -5.56 16 17 C 0.16 6.35 4.57 45.58 0.21 6.56 16 18 N -0.72 -38.85 5.31 -320.17 -1.70 -40.55 16 19 C -0.24 -14.00 9.97 84.03 0.84 -13.16 16 20 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 21 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 22 N -0.97 -62.89 13.06 21.65 0.28 -62.60 16 23 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 27 C -0.15 -5.24 7.34 31.12 0.23 -5.02 16 28 H 0.07 1.19 7.64 -2.39 -0.02 1.17 16 29 H 0.08 1.45 6.09 -2.39 -0.01 1.44 16 30 H 0.11 1.71 4.84 -2.38 -0.01 1.70 16 31 H 0.18 2.26 4.86 -2.91 -0.01 2.25 16 32 H 0.21 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.09 2.98 6.12 -2.39 -0.01 2.96 16 34 H 0.10 0.98 7.21 -2.39 -0.02 0.96 16 35 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.36 8.09 -2.38 -0.02 1.34 16 40 H 0.07 3.24 7.21 -2.39 -0.02 3.22 16 41 H 0.11 3.11 6.66 -2.38 -0.02 3.09 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 3.07 8.10 -2.38 -0.02 3.05 16 44 H 0.37 21.96 7.90 -92.71 -0.73 21.23 16 45 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 46 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.12 3.19 6.92 -2.38 -0.02 3.17 16 Total: -1.00 -82.30 369.23 2.28 -80.02 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.48 Total: 37.40 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.79 Total: -7.11 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -5.00 Total: -132.43 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.06 Total: -27.36 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -82.30 2.28 -80.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999408041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.211 kcal (2) G-P(sol) polarization free energy of solvation -82.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds