Wall clock time and date at job start Tue Mar 31 2020 11:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 120.00068 * 2 1 4 4 O 1.21693 * 119.99812 * 185.61219 * 3 2 1 5 5 C 1.46676 * 119.99970 * 5.61250 * 3 2 1 6 6 C 1.38045 * 126.20223 * 186.17434 * 5 3 2 7 7 C 1.39246 * 106.97658 * 179.84655 * 6 5 3 8 8 C 1.35963 * 108.03658 * 0.46185 * 7 6 5 9 9 N 1.35110 * 108.76686 * 359.66879 * 8 7 6 10 10 H 0.96996 * 125.69066 * 180.02562 * 9 8 7 11 11 C 1.51026 * 123.85172 * 179.59008 * 8 7 6 12 12 C 1.53330 * 108.40736 * 343.31270 * 11 8 7 13 13 C 1.53102 * 109.52667 * 50.17805 * 12 11 8 14 14 C 1.50842 * 127.70583 * 180.22418 * 7 6 5 15 15 C 1.46507 * 119.99617 * 180.02562 * 2 1 3 16 16 C 1.53776 * 113.69300 * 17.52712 * 15 2 1 17 17 C 1.53777 * 87.08514 * 89.12642 * 16 15 2 18 18 N 1.46500 * 113.61217 * 270.88532 * 17 16 15 19 19 C 1.36936 * 119.99897 * 257.15126 * 18 17 16 20 20 H 1.08007 * 120.00046 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00181 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00031 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47587 * 89.99620 * 23 21 19 25 25 H 1.48505 * 109.46858 * 209.99451 * 23 21 19 26 26 H 1.48494 * 109.47101 * 329.99240 * 23 21 19 27 27 C 1.53776 * 113.61336 * 115.06269 * 15 2 1 28 28 H 1.09005 * 109.46519 * 275.28329 * 1 2 3 29 29 H 1.09000 * 109.46972 * 35.27673 * 1 2 3 30 30 H 1.09001 * 109.47495 * 155.28350 * 1 2 3 31 31 H 1.08001 * 126.51476 * 359.97438 * 6 5 3 32 32 H 1.08992 * 109.67755 * 103.06546 * 11 8 7 33 33 H 1.08994 * 109.67446 * 223.60745 * 11 8 7 34 34 H 1.09004 * 109.47283 * 290.15615 * 12 11 8 35 35 H 1.09000 * 109.44854 * 170.18478 * 12 11 8 36 36 H 1.09000 * 109.47658 * 169.59291 * 13 12 11 37 37 H 1.09004 * 109.47254 * 49.58234 * 13 12 11 38 38 H 1.08994 * 109.68325 * 283.51678 * 14 7 6 39 39 H 1.09002 * 109.68016 * 44.07356 * 14 7 6 40 40 H 1.08998 * 112.84633 * 246.25072 * 15 2 1 41 41 H 1.08996 * 113.61268 * 203.68090 * 16 15 2 42 42 H 1.09005 * 113.61337 * 334.57313 * 16 15 2 43 43 H 1.08999 * 113.69118 * 139.98854 * 17 16 15 44 44 H 0.97003 * 120.00062 * 77.15616 * 18 17 16 45 45 H 0.96997 * 120.00237 * 180.02562 * 22 21 19 46 46 H 1.09002 * 113.62057 * 25.34439 * 27 15 2 47 47 H 1.09000 * 113.61346 * 156.24960 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1697 -0.1031 5 6 1.4108 2.4344 0.1242 6 6 1.9527 3.6997 0.0199 7 6 0.9098 4.6048 0.1991 8 6 -0.2300 3.8960 0.4165 9 7 0.0628 2.5777 0.3722 10 1 -0.5700 1.8530 0.4951 11 6 -1.5792 4.5277 0.6643 12 6 -1.3635 5.9987 1.0395 13 6 -0.4425 6.6595 0.0104 14 6 0.9807 6.1113 0.1721 15 6 2.1975 -1.2688 -0.0006 16 6 1.3435 -2.4751 -0.4252 17 6 1.7689 -2.1678 -1.8706 18 7 0.8774 -1.2303 -2.5580 19 6 -0.0302 -1.6940 -3.4725 20 1 -0.0891 -2.7510 -3.6868 21 6 -0.8745 -0.8056 -4.1243 22 7 -0.8032 0.4824 -3.8628 23 14 -2.1131 -1.4383 -5.3713 24 1 -3.3891 -1.7593 -4.6828 25 1 -2.3550 -0.3961 -6.4012 26 1 -1.5799 -2.6623 -6.0214 27 6 3.0223 -1.5033 -1.2770 28 1 -0.3632 0.0946 1.0234 29 1 -0.3633 0.8390 -0.5935 30 1 -0.3634 -0.9335 -0.4297 31 1 2.9885 3.9418 -0.1674 32 1 -2.1857 4.4641 -0.2390 33 1 -2.0819 4.0108 1.4817 34 1 -0.9064 6.0585 2.0273 35 1 -2.3236 6.5146 1.0518 36 1 -0.4364 7.7381 0.1677 37 1 -0.8042 6.4408 -0.9944 38 1 1.4105 6.4754 1.1051 39 1 1.5963 6.4348 -0.6673 40 1 2.7594 -1.4335 0.9188 41 1 1.7186 -3.4283 -0.0528 42 1 0.2768 -2.3398 -0.2458 43 1 1.9850 -3.0575 -2.4621 44 1 0.9301 -0.2811 -2.3653 45 1 -1.3934 1.1031 -4.3179 46 1 3.3112 -0.5835 -1.7855 47 1 3.8565 -2.1909 -1.1376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999656191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:55 Heat of formation + Delta-G solvation = 60.498254 kcal Electronic energy + Delta-G solvation = -27839.918993 eV Core-core repulsion = 24217.915425 eV Total energy + Delta-G solvation = -3622.003568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50074 -39.83122 -37.56836 -36.23098 -34.28397 -33.19975 -31.98027 -30.05104 -29.13449 -28.51183 -27.00324 -25.19879 -24.53308 -23.86754 -22.65597 -21.77530 -20.92478 -19.68156 -18.48036 -18.27702 -17.47109 -16.86358 -16.03826 -15.65359 -15.40952 -14.94918 -14.75182 -14.18988 -13.96633 -13.82872 -13.65191 -13.35543 -13.21752 -13.01372 -12.93930 -12.71472 -12.37587 -12.23357 -12.11451 -11.75379 -11.70893 -11.34678 -11.15414 -10.91558 -10.87616 -10.80319 -10.68284 -10.46562 -10.28408 -10.12003 -9.89066 -9.67944 -9.36103 -8.94328 -8.52879 -8.19115 -7.62379 -7.04216 -5.85385 -3.14965 1.82953 2.91399 3.21785 3.35872 3.42982 3.44206 3.45771 3.81847 4.50835 4.71759 4.77221 4.85783 4.86205 5.16515 5.20241 5.22188 5.38702 5.41490 5.44995 5.50133 5.54466 5.55021 5.57283 5.61628 5.70265 5.81603 5.83600 5.89141 5.94437 6.00183 6.13001 6.14526 6.18302 6.31544 6.32434 6.38555 6.47067 6.53067 6.63929 6.74967 6.87650 7.05633 7.14367 7.27706 7.64332 7.65737 7.78649 8.33120 8.57231 9.44492 10.02583 10.38723 11.35907 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.004796 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.520097 B = 5837.379784 C = 7511.229594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.586 5.586 3 C 0.592 3.408 4 O -0.535 6.535 5 C -0.042 4.042 6 C -0.104 4.104 7 C -0.179 4.179 8 C 0.043 3.957 9 N -0.529 5.529 10 H 0.420 0.580 11 C -0.054 4.054 12 C -0.110 4.110 13 C -0.120 4.120 14 C -0.044 4.044 15 C 0.129 3.871 16 C -0.185 4.185 17 C 0.164 3.836 18 N -0.705 5.705 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.928 5.928 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.161 4.161 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.388 0.612 45 H 0.255 0.745 46 H 0.076 0.924 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 7.042 12.467 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.318 5.318 3 C 0.382 3.618 4 O -0.413 6.413 5 C -0.155 4.155 6 C -0.131 4.131 7 C -0.185 4.185 8 C -0.076 4.076 9 N -0.131 5.131 10 H 0.266 0.734 11 C -0.092 4.092 12 C -0.148 4.148 13 C -0.158 4.158 14 C -0.081 4.081 15 C 0.026 3.974 16 C -0.226 4.226 17 C 0.052 3.948 18 N -0.345 5.345 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.576 5.576 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.201 4.201 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.160 0.840 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.223 0.777 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.563 6.759 12.270 14.019 hybrid contribution -1.092 -0.464 -0.656 1.356 sum -1.655 6.295 11.613 13.313 Atomic orbital electron populations 1.22325 0.80082 1.07075 0.99372 1.47295 1.06527 1.05075 1.72918 1.17048 0.86545 0.81728 0.76483 1.90779 1.12990 1.86639 1.50865 1.20324 0.83069 0.95064 1.17029 1.20877 0.99076 0.89610 1.03498 1.19174 0.92312 0.95181 1.11840 1.20436 0.96919 0.83250 1.06973 1.42865 1.08608 1.07463 1.54171 0.73407 1.20289 0.91414 0.95531 1.01922 1.21491 0.99792 0.93955 0.99546 1.21599 0.95261 0.99229 0.99665 1.20008 0.96585 0.90098 1.01444 1.21765 0.94520 0.83295 0.97799 1.24273 1.00305 0.95719 1.02279 1.21169 0.89737 0.93493 0.90414 1.42319 1.39913 1.05755 1.46524 1.19294 1.10540 0.92810 1.14889 0.91052 1.24740 1.00165 0.95336 1.00383 1.69672 1.41258 1.00849 1.45800 0.86204 0.81315 0.77599 0.81127 1.21792 1.21806 1.20760 1.23704 0.97751 1.01913 0.96712 0.94121 0.89971 0.87069 0.83960 0.90084 0.91018 0.91602 0.91425 0.91841 0.91550 0.91653 0.91268 0.91045 0.89966 0.90377 0.92057 0.77700 0.93495 0.90511 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 7.12 59.85 0.43 1.33 16 2 N -0.59 -10.63 2.14 -174.54 -0.37 -11.00 16 3 C 0.59 11.78 7.41 -12.85 -0.10 11.68 16 4 O -0.54 -11.87 15.75 5.20 0.08 -11.79 16 5 C -0.04 -0.76 6.66 -81.85 -0.54 -1.31 16 6 C -0.10 -1.80 10.63 -39.28 -0.42 -2.22 16 7 C -0.18 -2.68 5.91 -104.99 -0.62 -3.30 16 8 C 0.04 0.62 7.02 -81.81 -0.57 0.04 16 9 N -0.53 -8.25 5.07 -5.50 -0.03 -8.28 16 10 H 0.42 5.91 4.88 -40.82 -0.20 5.71 16 11 C -0.05 -0.58 6.30 -27.55 -0.17 -0.75 16 12 C -0.11 -1.00 5.89 -26.51 -0.16 -1.16 16 13 C -0.12 -1.18 5.90 -26.49 -0.16 -1.34 16 14 C -0.04 -0.51 6.28 -27.62 -0.17 -0.68 16 15 C 0.13 2.24 4.15 -67.12 -0.28 1.96 16 16 C -0.18 -3.04 7.16 -25.92 -0.19 -3.22 16 17 C 0.16 3.27 4.55 -67.12 -0.31 2.97 16 18 N -0.71 -17.13 4.01 -52.64 -0.21 -17.34 16 19 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 20 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -26.65 13.06 55.49 0.72 -25.93 16 23 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C -0.16 -2.99 7.11 -25.92 -0.18 -3.18 16 28 H 0.04 0.54 7.57 -51.93 -0.39 0.14 16 29 H 0.08 1.51 5.49 -51.93 -0.29 1.22 16 30 H 0.11 2.03 4.59 -51.93 -0.24 1.79 16 31 H 0.14 2.37 8.06 -52.49 -0.42 1.94 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.33 5.59 -51.93 -0.29 1.04 16 43 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 44 H 0.39 10.11 6.10 -40.82 -0.25 9.86 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.08 1.68 7.15 -51.93 -0.37 1.31 16 47 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -31.31 361.64 -10.13 -41.44 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -7.06 Total: 16.98 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -3.69 Total: -6.18 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.11 Total: -62.54 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.31 -10.13 -41.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999656191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.941 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds