Wall clock time and date at job start Tue Mar 31 2020 11:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 120.00068 * 2 1 4 4 O 1.21693 * 119.99812 * 185.61219 * 3 2 1 5 5 C 1.46676 * 119.99970 * 5.61250 * 3 2 1 6 6 C 1.38045 * 126.20223 * 186.17434 * 5 3 2 7 7 C 1.39246 * 106.97658 * 179.84655 * 6 5 3 8 8 C 1.35963 * 108.03658 * 0.46185 * 7 6 5 9 9 N 1.35110 * 108.76686 * 359.66879 * 8 7 6 10 10 H 0.96996 * 125.69066 * 180.02562 * 9 8 7 11 11 C 1.51026 * 123.85172 * 179.59008 * 8 7 6 12 12 C 1.53330 * 108.40736 * 343.31270 * 11 8 7 13 13 C 1.53102 * 109.52667 * 50.17805 * 12 11 8 14 14 C 1.50842 * 127.70583 * 180.22418 * 7 6 5 15 15 C 1.46507 * 119.99617 * 180.02562 * 2 1 3 16 16 C 1.53776 * 113.69300 * 17.52712 * 15 2 1 17 17 C 1.53777 * 87.08514 * 89.12642 * 16 15 2 18 18 N 1.46500 * 113.61217 * 270.88532 * 17 16 15 19 19 C 1.36936 * 119.99897 * 257.15126 * 18 17 16 20 20 H 1.08007 * 120.00046 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00181 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00031 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47587 * 89.99620 * 23 21 19 25 25 H 1.48505 * 109.46858 * 209.99451 * 23 21 19 26 26 H 1.48494 * 109.47101 * 329.99240 * 23 21 19 27 27 C 1.53776 * 113.61336 * 115.06269 * 15 2 1 28 28 H 1.09005 * 109.46519 * 275.28329 * 1 2 3 29 29 H 1.09000 * 109.46972 * 35.27673 * 1 2 3 30 30 H 1.09001 * 109.47495 * 155.28350 * 1 2 3 31 31 H 1.08001 * 126.51476 * 359.97438 * 6 5 3 32 32 H 1.08992 * 109.67755 * 103.06546 * 11 8 7 33 33 H 1.08994 * 109.67446 * 223.60745 * 11 8 7 34 34 H 1.09004 * 109.47283 * 290.15615 * 12 11 8 35 35 H 1.09000 * 109.44854 * 170.18478 * 12 11 8 36 36 H 1.09000 * 109.47658 * 169.59291 * 13 12 11 37 37 H 1.09004 * 109.47254 * 49.58234 * 13 12 11 38 38 H 1.08994 * 109.68325 * 283.51678 * 14 7 6 39 39 H 1.09002 * 109.68016 * 44.07356 * 14 7 6 40 40 H 1.08998 * 112.84633 * 246.25072 * 15 2 1 41 41 H 1.08996 * 113.61268 * 203.68090 * 16 15 2 42 42 H 1.09005 * 113.61337 * 334.57313 * 16 15 2 43 43 H 1.08999 * 113.69118 * 139.98854 * 17 16 15 44 44 H 0.97003 * 120.00062 * 77.15616 * 18 17 16 45 45 H 0.96997 * 120.00237 * 180.02562 * 22 21 19 46 46 H 1.09002 * 113.62057 * 25.34439 * 27 15 2 47 47 H 1.09000 * 113.61346 * 156.24960 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1697 -0.1031 5 6 1.4108 2.4344 0.1242 6 6 1.9527 3.6997 0.0199 7 6 0.9098 4.6048 0.1991 8 6 -0.2300 3.8960 0.4165 9 7 0.0628 2.5777 0.3722 10 1 -0.5700 1.8530 0.4951 11 6 -1.5792 4.5277 0.6643 12 6 -1.3635 5.9987 1.0395 13 6 -0.4425 6.6595 0.0104 14 6 0.9807 6.1113 0.1721 15 6 2.1975 -1.2688 -0.0006 16 6 1.3435 -2.4751 -0.4252 17 6 1.7689 -2.1678 -1.8706 18 7 0.8774 -1.2303 -2.5580 19 6 -0.0302 -1.6940 -3.4725 20 1 -0.0891 -2.7510 -3.6868 21 6 -0.8745 -0.8056 -4.1243 22 7 -0.8032 0.4824 -3.8628 23 14 -2.1131 -1.4383 -5.3713 24 1 -3.3891 -1.7593 -4.6828 25 1 -2.3550 -0.3961 -6.4012 26 1 -1.5799 -2.6623 -6.0214 27 6 3.0223 -1.5033 -1.2770 28 1 -0.3632 0.0946 1.0234 29 1 -0.3633 0.8390 -0.5935 30 1 -0.3634 -0.9335 -0.4297 31 1 2.9885 3.9418 -0.1674 32 1 -2.1857 4.4641 -0.2390 33 1 -2.0819 4.0108 1.4817 34 1 -0.9064 6.0585 2.0273 35 1 -2.3236 6.5146 1.0518 36 1 -0.4364 7.7381 0.1677 37 1 -0.8042 6.4408 -0.9944 38 1 1.4105 6.4754 1.1051 39 1 1.5963 6.4348 -0.6673 40 1 2.7594 -1.4335 0.9188 41 1 1.7186 -3.4283 -0.0528 42 1 0.2768 -2.3398 -0.2458 43 1 1.9850 -3.0575 -2.4621 44 1 0.9301 -0.2811 -2.3653 45 1 -1.3934 1.1031 -4.3179 46 1 3.3112 -0.5835 -1.7855 47 1 3.8565 -2.1909 -1.1376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999656191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:54 Heat of formation + Delta-G solvation = 43.141671 kcal Electronic energy + Delta-G solvation = -27840.671631 eV Core-core repulsion = 24217.915425 eV Total energy + Delta-G solvation = -3622.756206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.74685 -41.25254 -39.07166 -37.22195 -35.85864 -34.99185 -33.08694 -31.94256 -30.22220 -29.68425 -28.39291 -26.76231 -25.92026 -25.46569 -24.00021 -22.83666 -22.15262 -21.04393 -19.76002 -19.59235 -19.30477 -18.23641 -17.54546 -16.88855 -16.80374 -16.58975 -16.12806 -15.57337 -15.44731 -14.96098 -14.86223 -14.71708 -14.69455 -14.43560 -14.11521 -13.96797 -13.60969 -13.46270 -13.37242 -13.18819 -13.08906 -12.75495 -12.71834 -12.56126 -12.46046 -12.18562 -11.74267 -11.68880 -11.65110 -11.51974 -11.32807 -11.31847 -10.94606 -10.80209 -9.83750 -9.58167 -8.99293 -8.84143 -7.93003 -5.22353 0.47203 1.46385 1.48547 1.56053 1.70342 1.86623 2.22299 2.38865 2.54921 3.37206 3.42039 3.72685 3.79426 3.84933 3.91387 4.00189 4.05387 4.09739 4.21798 4.23274 4.25872 4.38610 4.43288 4.56218 4.69149 4.72143 4.74566 4.79007 4.81139 4.85989 4.97656 5.03513 5.07048 5.10030 5.13612 5.24242 5.28133 5.35074 5.38725 5.39901 5.51420 5.54931 5.69357 5.90985 6.01575 6.27381 6.32474 6.51764 7.08925 7.34233 8.09749 8.35241 9.28423 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.004796 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.520097 B = 5837.379784 C = 7511.229594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.585 5.585 3 C 0.584 3.416 4 O -0.572 6.572 5 C -0.076 4.076 6 C -0.121 4.121 7 C -0.191 4.191 8 C 0.049 3.951 9 N -0.524 5.524 10 H 0.425 0.575 11 C -0.055 4.055 12 C -0.106 4.106 13 C -0.118 4.118 14 C -0.045 4.045 15 C 0.125 3.875 16 C -0.157 4.157 17 C 0.144 3.856 18 N -0.718 5.718 19 C -0.242 4.242 20 H 0.077 0.923 21 C -0.066 4.066 22 N -0.960 5.960 23 Si 0.969 3.031 24 H -0.284 1.284 25 H -0.302 1.302 26 H -0.275 1.275 27 C -0.156 4.156 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.376 0.624 45 H 0.248 0.752 46 H 0.035 0.965 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 6.699 13.986 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.316 5.316 3 C 0.375 3.625 4 O -0.453 6.453 5 C -0.189 4.189 6 C -0.148 4.148 7 C -0.196 4.196 8 C -0.071 4.071 9 N -0.127 5.127 10 H 0.272 0.728 11 C -0.093 4.093 12 C -0.144 4.144 13 C -0.156 4.156 14 C -0.082 4.082 15 C 0.022 3.978 16 C -0.198 4.198 17 C 0.034 3.966 18 N -0.357 5.357 19 C -0.374 4.374 20 H 0.095 0.905 21 C -0.259 4.259 22 N -0.610 5.610 23 Si 0.799 3.201 24 H -0.210 1.210 25 H -0.230 1.230 26 H -0.200 1.200 27 C -0.196 4.196 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.154 0.846 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.209 0.791 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.144 6.348 13.814 15.353 hybrid contribution -0.533 -0.372 -1.135 1.308 sum -2.678 5.977 12.679 14.271 Atomic orbital electron populations 1.22286 0.79218 1.05450 1.01163 1.47374 1.07095 1.05038 1.72116 1.17354 0.86366 0.82688 0.76113 1.90731 1.14407 1.87263 1.52912 1.20229 0.84378 0.94668 1.19632 1.21099 0.99594 0.90345 1.03804 1.19608 0.91708 0.96881 1.11442 1.21179 0.98508 0.82639 1.04730 1.42839 1.07721 1.08298 1.53823 0.72798 1.20507 0.89238 0.96782 1.02778 1.21519 1.00927 0.92571 0.99347 1.21611 0.93919 1.00734 0.99322 1.20119 0.98223 0.87831 1.02068 1.21937 0.94610 0.83327 0.97921 1.24082 1.00186 0.96950 0.98554 1.21477 0.90046 0.92931 0.92147 1.42430 1.40446 1.05834 1.46983 1.19628 1.10247 0.92987 1.14549 0.90533 1.25440 1.02324 0.95548 1.02558 1.69837 1.42249 1.01844 1.47050 0.85216 0.79425 0.76774 0.78721 1.21047 1.22957 1.19997 1.23702 0.98304 1.00582 0.96990 0.90296 0.91984 0.88388 0.84631 0.90051 0.88872 0.90990 0.88905 0.89406 0.92811 0.90241 0.91589 0.89119 0.86128 0.90629 0.91826 0.79118 0.94301 0.94575 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.03 7.12 127.77 0.91 2.94 16 2 N -0.59 -21.39 2.14 -824.35 -1.76 -23.15 16 3 C 0.58 24.15 7.41 86.45 0.64 24.79 16 4 O -0.57 -26.70 15.75 -4.32 -0.07 -26.76 16 5 C -0.08 -2.89 6.66 40.36 0.27 -2.62 16 6 C -0.12 -4.39 10.63 22.47 0.24 -4.15 16 7 C -0.19 -5.73 5.91 -20.11 -0.12 -5.85 16 8 C 0.05 1.38 7.02 41.63 0.29 1.68 16 9 N -0.52 -16.49 5.07 -171.31 -0.87 -17.36 16 10 H 0.43 11.91 4.88 -92.71 -0.45 11.45 16 11 C -0.06 -1.08 6.30 30.06 0.19 -0.89 16 12 C -0.11 -1.61 5.89 30.74 0.18 -1.43 16 13 C -0.12 -2.08 5.90 30.75 0.18 -1.90 16 14 C -0.04 -1.00 6.28 30.02 0.19 -0.81 16 15 C 0.12 4.19 4.15 45.51 0.19 4.38 16 16 C -0.16 -4.81 7.16 31.12 0.22 -4.58 16 17 C 0.14 5.65 4.55 45.52 0.21 5.85 16 18 N -0.72 -35.30 4.01 -320.44 -1.29 -36.59 16 19 C -0.24 -12.93 9.98 84.03 0.84 -12.09 16 20 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 22 N -0.96 -56.45 13.06 21.65 0.28 -56.17 16 23 Si 0.97 44.81 29.55 68.60 2.03 46.84 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 C -0.16 -5.77 7.11 31.12 0.22 -5.55 16 28 H 0.08 1.97 7.57 -2.38 -0.02 1.95 16 29 H 0.06 2.33 5.49 -2.39 -0.01 2.32 16 30 H 0.10 3.53 4.59 -2.39 -0.01 3.52 16 31 H 0.14 4.89 8.06 -2.91 -0.02 4.86 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.05 8.11 -2.38 -0.02 1.03 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.08 8.11 -2.38 -0.02 1.07 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.08 2.41 5.59 -2.38 -0.01 2.40 16 43 H 0.06 2.44 8.12 -2.39 -0.02 2.42 16 44 H 0.38 20.23 6.10 -92.71 -0.57 19.66 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.04 1.63 7.15 -2.39 -0.02 1.61 16 47 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -70.38 361.64 3.42 -66.96 By element: Atomic # 1 Polarization: 49.64 SS G_CDS: -0.02 Total: 49.62 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 5.12 Total: -3.39 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -3.64 Total: -133.27 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.07 Total: -26.76 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -70.38 3.42 -66.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999656191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.101 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds