Wall clock time and date at job start Tue Mar 31 2020 11:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46497 * 119.99904 * 2 1 4 4 C 1.39040 * 119.99529 * 180.02562 * 2 1 3 5 5 C 1.39217 * 119.93755 * 354.24230 * 4 2 1 6 6 C 1.37609 * 120.07161 * 180.02562 * 5 4 2 7 7 C 1.39789 * 119.93133 * 0.02562 * 6 5 4 8 8 C 1.47521 * 120.06691 * 179.97438 * 7 6 5 9 9 O 1.21594 * 120.00520 * 335.84141 * 8 7 6 10 10 N 1.34783 * 119.99909 * 155.56426 * 8 7 6 11 11 C 1.46501 * 119.99698 * 355.05964 * 10 8 7 12 12 C 1.46496 * 120.00185 * 175.05557 * 10 8 7 13 13 C 1.53787 * 113.61501 * 217.49645 * 12 10 8 14 14 C 1.53781 * 87.07973 * 220.01843 * 13 12 10 15 15 N 1.46500 * 113.68509 * 139.99272 * 14 13 12 16 16 C 1.36937 * 120.00148 * 107.46753 * 15 14 13 17 17 H 1.08004 * 119.99616 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00580 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99780 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00400 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46913 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47286 * 119.99539 * 20 18 16 23 23 H 1.48491 * 109.47108 * 240.00110 * 20 18 16 24 24 C 1.53781 * 87.08242 * 25.43493 * 14 13 12 25 25 C 1.39797 * 119.86374 * 0.26884 * 7 6 5 26 26 C 1.37615 * 119.92475 * 359.47387 * 25 7 6 27 27 H 1.09004 * 109.46426 * 270.00161 * 1 2 3 28 28 H 1.09002 * 109.47181 * 29.99736 * 1 2 3 29 29 H 1.08997 * 109.46945 * 149.99805 * 1 2 3 30 30 H 1.09004 * 109.46924 * 185.06927 * 3 2 1 31 31 H 1.08999 * 109.47113 * 305.06677 * 3 2 1 32 32 H 1.09001 * 109.47435 * 65.06523 * 3 2 1 33 33 H 1.08004 * 119.96303 * 0.03049 * 5 4 2 34 34 H 1.08001 * 120.03484 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47451 * 95.81378 * 11 10 8 36 36 H 1.09001 * 109.46886 * 215.81207 * 11 10 8 37 37 H 1.08997 * 109.47350 * 335.81042 * 11 10 8 38 38 H 1.08994 * 112.84935 * 348.80901 * 12 10 8 39 39 H 1.08995 * 113.61419 * 334.57222 * 13 12 10 40 40 H 1.09002 * 113.60765 * 105.46905 * 13 12 10 41 41 H 1.08998 * 113.61752 * 270.88504 * 14 13 12 42 42 H 0.96998 * 120.00193 * 287.46186 * 15 14 13 43 43 H 0.97001 * 120.00205 * 180.02562 * 19 18 16 44 44 H 1.09002 * 113.61583 * 220.01459 * 24 14 13 45 45 H 1.08999 * 113.61376 * 89.11210 * 24 14 13 46 46 H 1.07995 * 120.03790 * 179.70176 * 25 7 6 47 47 H 1.08005 * 119.95803 * 180.23139 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1602 -1.2042 -0.0005 5 6 1.4680 -2.4060 0.1200 6 6 2.1532 -3.5994 0.1203 7 6 3.5459 -3.6040 0.0000 8 6 4.2835 -4.8816 0.0005 9 8 3.7968 -5.8645 0.5253 10 7 5.4947 -4.9607 -0.5856 11 6 6.0312 -3.8100 -1.3165 12 6 6.2745 -6.1973 -0.4917 13 6 7.7861 -5.9619 -0.3346 14 6 7.9905 -7.1455 -1.2950 15 7 9.0724 -6.9395 -2.2611 16 6 10.2498 -7.6257 -2.1272 17 1 10.3806 -8.3192 -1.3096 18 6 11.2747 -7.4310 -3.0428 19 7 11.1147 -6.5870 -4.0401 20 14 12.8811 -8.3666 -2.8597 21 1 12.8080 -9.2467 -1.6659 22 1 13.1127 -9.1943 -4.0707 23 1 13.9993 -7.4032 -2.6973 24 6 6.5944 -6.8290 -1.8568 25 6 4.2387 -2.3953 -0.1147 26 6 3.5473 -1.2055 -0.1197 27 1 -0.3632 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 3.2658 1.0715 -0.0908 31 1 1.8679 1.8786 -0.8411 32 1 2.0041 1.8000 0.9319 33 1 0.3920 -2.4018 0.2132 34 1 1.6156 -4.5314 0.2142 35 1 6.6881 -3.2377 -0.6615 36 1 6.5953 -4.1597 -2.1811 37 1 5.2096 -3.1765 -1.6506 38 1 5.8637 -6.9029 0.2304 39 1 8.1238 -5.0079 -0.7393 40 1 8.1546 -6.1493 0.6740 41 1 8.0502 -8.1107 -0.7920 42 1 8.9547 -6.3170 -2.9956 43 1 11.8308 -6.4511 -4.6801 44 1 6.0009 -7.7163 -2.0772 45 1 6.6064 -6.1119 -2.6777 46 1 5.3151 -2.3953 -0.2029 47 1 4.0817 -0.2714 -0.2120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999746134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:38 Heat of formation + Delta-G solvation = 65.001715 kcal Electronic energy + Delta-G solvation = -25981.749421 eV Core-core repulsion = 22359.941138 eV Total energy + Delta-G solvation = -3621.808283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.60839 -39.40675 -37.90553 -36.27743 -34.81131 -33.14234 -31.46135 -30.54240 -29.71872 -28.61305 -27.09145 -25.86000 -25.07804 -24.33120 -22.83518 -22.38293 -21.20757 -19.64389 -18.84737 -17.69194 -17.08189 -17.05492 -16.38629 -15.90831 -15.54527 -15.25770 -14.98554 -14.67620 -14.46000 -14.05674 -14.00623 -13.73459 -13.16598 -13.02075 -12.99145 -12.86332 -12.69528 -12.55583 -12.47975 -12.31679 -11.99121 -11.73660 -11.64151 -11.22103 -10.92099 -10.84771 -10.53478 -10.42569 -10.23954 -10.08914 -9.94168 -9.69109 -9.47167 -9.12981 -8.88947 -8.35295 -7.61018 -6.97245 -5.79428 -3.07954 0.98849 1.25932 2.70470 2.92924 3.19808 3.42607 3.48887 3.50762 3.80594 4.44288 4.51577 4.59066 4.66152 4.74008 4.86504 4.92351 5.05733 5.13779 5.15599 5.17371 5.24632 5.26672 5.30339 5.36369 5.39341 5.44903 5.47936 5.57120 5.79518 5.84684 5.89365 5.94202 6.00316 6.07440 6.22574 6.31129 6.33854 6.39297 6.50655 6.57708 6.60765 6.82019 6.87107 7.08361 7.11578 7.63704 7.70351 8.36974 8.39336 9.50573 10.07740 10.42498 11.43047 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027357 B = 0.002278 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.239897 B =12289.477617 C =13005.656125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.634 5.634 3 C 0.086 3.914 4 C 0.235 3.765 5 C -0.211 4.211 6 C -0.011 4.011 7 C -0.193 4.193 8 C 0.561 3.439 9 O -0.550 6.550 10 N -0.595 5.595 11 C 0.064 3.936 12 C 0.118 3.882 13 C -0.174 4.174 14 C 0.169 3.831 15 N -0.710 5.710 16 C -0.242 4.242 17 H 0.073 0.927 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.162 4.162 25 C -0.050 4.050 26 C -0.213 4.213 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.147 0.853 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.326 16.817 7.729 28.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.344 5.344 3 C -0.057 4.057 4 C 0.132 3.868 5 C -0.233 4.233 6 C -0.030 4.030 7 C -0.198 4.198 8 C 0.351 3.649 9 O -0.430 6.430 10 N -0.325 5.325 11 C -0.079 4.079 12 C 0.015 3.985 13 C -0.216 4.216 14 C 0.056 3.944 15 N -0.348 5.348 16 C -0.373 4.373 17 H 0.091 0.909 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.203 4.203 25 C -0.069 4.069 26 C -0.235 4.235 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.164 0.836 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.496 16.356 8.019 28.176 hybrid contribution 0.871 0.004 -0.250 0.906 sum -20.625 16.360 7.769 27.448 Atomic orbital electron populations 1.21663 0.79322 1.02831 1.01380 1.46266 1.05277 1.03394 1.79445 1.21767 0.97989 0.84781 1.01180 1.18038 0.91411 0.85732 0.91608 1.20588 0.99828 0.90797 1.12074 1.20955 0.92617 0.97809 0.91668 1.19679 0.94306 0.93019 1.12755 1.18292 0.80721 0.87895 0.78017 1.90736 1.67633 1.37905 1.46680 1.47707 1.17653 1.14670 1.52503 1.22343 0.99706 0.88776 0.97030 1.22588 0.91139 0.85692 0.99099 1.24313 0.92870 1.02879 1.01549 1.21346 0.86828 0.95400 0.90781 1.42362 1.12045 1.50429 1.29932 1.19368 0.91229 1.17970 1.08718 0.90943 1.24766 0.98681 0.99922 0.97633 1.69669 1.33145 1.38935 1.16360 0.86107 0.83756 0.79035 0.77242 1.20494 1.21879 1.21880 1.23914 0.99192 1.00433 0.96732 1.21862 1.01134 0.90996 0.92934 1.20676 0.92121 0.98677 1.12018 0.93194 0.91433 0.91077 0.90032 0.92423 0.92803 0.85622 0.85087 0.92144 0.90494 0.89822 0.86891 0.89903 0.92161 0.90283 0.78128 0.93538 0.91775 0.90104 0.83614 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.08 59.85 0.60 1.07 16 2 N -0.63 -4.61 3.39 -187.55 -0.64 -5.25 16 3 C 0.09 0.44 10.62 59.85 0.64 1.07 16 4 C 0.24 2.21 6.54 -83.86 -0.55 1.67 16 5 C -0.21 -2.07 9.13 -39.45 -0.36 -2.43 16 6 C -0.01 -0.13 9.58 -39.23 -0.38 -0.50 16 7 C -0.19 -2.50 5.50 -104.95 -0.58 -3.07 16 8 C 0.56 8.85 7.48 -12.47 -0.09 8.76 16 9 O -0.55 -10.43 16.10 5.28 0.09 -10.35 16 10 N -0.59 -8.78 3.08 -174.24 -0.54 -9.32 16 11 C 0.06 0.76 7.22 59.85 0.43 1.19 16 12 C 0.12 1.92 4.19 -67.12 -0.28 1.64 16 13 C -0.17 -3.02 7.36 -25.92 -0.19 -3.21 16 14 C 0.17 3.36 4.48 -67.12 -0.30 3.06 16 15 N -0.71 -17.56 5.40 -52.64 -0.28 -17.84 16 16 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 17 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C -0.16 -2.81 7.40 -25.92 -0.19 -3.00 16 25 C -0.05 -0.54 7.51 -39.23 -0.29 -0.83 16 26 C -0.21 -1.98 9.29 -39.45 -0.37 -2.35 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 29 H 0.07 0.35 6.43 -51.93 -0.33 0.02 16 30 H 0.08 0.39 5.28 -51.93 -0.27 0.12 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.13 0.98 6.28 -52.48 -0.33 0.65 16 34 H 0.13 1.55 7.83 -52.49 -0.41 1.14 16 35 H 0.06 0.64 7.04 -51.93 -0.37 0.27 16 36 H 0.08 0.98 6.60 -51.93 -0.34 0.64 16 37 H 0.08 0.86 5.10 -51.93 -0.26 0.60 16 38 H 0.11 1.93 7.27 -51.93 -0.38 1.55 16 39 H 0.08 1.46 6.79 -51.93 -0.35 1.10 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 42 H 0.38 10.02 7.92 -40.82 -0.32 9.70 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.08 1.41 6.83 -51.93 -0.35 1.05 16 46 H 0.15 1.38 4.42 -52.49 -0.23 1.14 16 47 H 0.13 0.92 5.71 -52.48 -0.30 0.62 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -33.33 370.27 -9.01 -42.34 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.76 Total: 8.94 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.15 Total: -4.25 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.73 Total: -59.52 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.33 -9.01 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999746134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.340 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds