Wall clock time and date at job start Tue Mar 31 2020 11:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46497 * 119.99904 * 2 1 4 4 C 1.39040 * 119.99529 * 180.02562 * 2 1 3 5 5 C 1.39217 * 119.93755 * 354.24230 * 4 2 1 6 6 C 1.37609 * 120.07161 * 180.02562 * 5 4 2 7 7 C 1.39789 * 119.93133 * 0.02562 * 6 5 4 8 8 C 1.47521 * 120.06691 * 179.97438 * 7 6 5 9 9 O 1.21594 * 120.00520 * 335.84141 * 8 7 6 10 10 N 1.34783 * 119.99909 * 155.56426 * 8 7 6 11 11 C 1.46501 * 119.99698 * 355.05964 * 10 8 7 12 12 C 1.46496 * 120.00185 * 175.05557 * 10 8 7 13 13 C 1.53787 * 113.61501 * 217.49645 * 12 10 8 14 14 C 1.53781 * 87.07973 * 220.01843 * 13 12 10 15 15 N 1.46500 * 113.68509 * 139.99272 * 14 13 12 16 16 C 1.36937 * 120.00148 * 107.46753 * 15 14 13 17 17 H 1.08004 * 119.99616 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00580 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99780 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00400 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46913 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47286 * 119.99539 * 20 18 16 23 23 H 1.48491 * 109.47108 * 240.00110 * 20 18 16 24 24 C 1.53781 * 87.08242 * 25.43493 * 14 13 12 25 25 C 1.39797 * 119.86374 * 0.26884 * 7 6 5 26 26 C 1.37615 * 119.92475 * 359.47387 * 25 7 6 27 27 H 1.09004 * 109.46426 * 270.00161 * 1 2 3 28 28 H 1.09002 * 109.47181 * 29.99736 * 1 2 3 29 29 H 1.08997 * 109.46945 * 149.99805 * 1 2 3 30 30 H 1.09004 * 109.46924 * 185.06927 * 3 2 1 31 31 H 1.08999 * 109.47113 * 305.06677 * 3 2 1 32 32 H 1.09001 * 109.47435 * 65.06523 * 3 2 1 33 33 H 1.08004 * 119.96303 * 0.03049 * 5 4 2 34 34 H 1.08001 * 120.03484 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47451 * 95.81378 * 11 10 8 36 36 H 1.09001 * 109.46886 * 215.81207 * 11 10 8 37 37 H 1.08997 * 109.47350 * 335.81042 * 11 10 8 38 38 H 1.08994 * 112.84935 * 348.80901 * 12 10 8 39 39 H 1.08995 * 113.61419 * 334.57222 * 13 12 10 40 40 H 1.09002 * 113.60765 * 105.46905 * 13 12 10 41 41 H 1.08998 * 113.61752 * 270.88504 * 14 13 12 42 42 H 0.96998 * 120.00193 * 287.46186 * 15 14 13 43 43 H 0.97001 * 120.00205 * 180.02562 * 19 18 16 44 44 H 1.09002 * 113.61583 * 220.01459 * 24 14 13 45 45 H 1.08999 * 113.61376 * 89.11210 * 24 14 13 46 46 H 1.07995 * 120.03790 * 179.70176 * 25 7 6 47 47 H 1.08005 * 119.95803 * 180.23139 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1602 -1.2042 -0.0005 5 6 1.4680 -2.4060 0.1200 6 6 2.1532 -3.5994 0.1203 7 6 3.5459 -3.6040 0.0000 8 6 4.2835 -4.8816 0.0005 9 8 3.7968 -5.8645 0.5253 10 7 5.4947 -4.9607 -0.5856 11 6 6.0312 -3.8100 -1.3165 12 6 6.2745 -6.1973 -0.4917 13 6 7.7861 -5.9619 -0.3346 14 6 7.9905 -7.1455 -1.2950 15 7 9.0724 -6.9395 -2.2611 16 6 10.2498 -7.6257 -2.1272 17 1 10.3806 -8.3192 -1.3096 18 6 11.2747 -7.4310 -3.0428 19 7 11.1147 -6.5870 -4.0401 20 14 12.8811 -8.3666 -2.8597 21 1 12.8080 -9.2467 -1.6659 22 1 13.1127 -9.1943 -4.0707 23 1 13.9993 -7.4032 -2.6973 24 6 6.5944 -6.8290 -1.8568 25 6 4.2387 -2.3953 -0.1147 26 6 3.5473 -1.2055 -0.1197 27 1 -0.3632 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 3.2658 1.0715 -0.0908 31 1 1.8679 1.8786 -0.8411 32 1 2.0041 1.8000 0.9319 33 1 0.3920 -2.4018 0.2132 34 1 1.6156 -4.5314 0.2142 35 1 6.6881 -3.2377 -0.6615 36 1 6.5953 -4.1597 -2.1811 37 1 5.2096 -3.1765 -1.6506 38 1 5.8637 -6.9029 0.2304 39 1 8.1238 -5.0079 -0.7393 40 1 8.1546 -6.1493 0.6740 41 1 8.0502 -8.1107 -0.7920 42 1 8.9547 -6.3170 -2.9956 43 1 11.8308 -6.4511 -4.6801 44 1 6.0009 -7.7163 -2.0772 45 1 6.6064 -6.1119 -2.6777 46 1 5.3151 -2.3953 -0.2029 47 1 4.0817 -0.2714 -0.2120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999746134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:37 Heat of formation + Delta-G solvation = 44.649535 kcal Electronic energy + Delta-G solvation = -25982.631958 eV Core-core repulsion = 22359.941138 eV Total energy + Delta-G solvation = -3622.690820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67487 -40.37465 -39.20294 -37.05550 -36.21578 -34.89931 -32.33657 -31.94322 -30.96305 -29.10759 -28.13018 -26.88892 -26.50270 -25.91513 -24.14336 -23.19089 -22.21347 -20.79645 -20.28874 -19.04267 -18.49303 -18.10545 -17.52494 -16.77297 -16.46890 -16.30446 -16.06376 -15.95996 -15.69627 -15.43641 -14.96714 -14.77834 -14.47893 -14.35339 -14.10713 -13.66049 -13.53333 -13.35173 -13.32815 -13.19198 -13.12598 -13.02843 -12.84731 -12.79423 -12.47552 -12.21147 -12.10921 -11.95563 -11.68665 -11.60533 -11.40992 -10.90293 -10.86330 -10.70884 -9.91868 -9.58934 -8.98161 -8.26573 -7.93817 -5.21926 0.11517 0.48868 1.49115 1.49598 1.59602 1.85883 2.04575 2.19041 2.58030 2.93239 3.37852 3.59683 3.77905 3.82223 3.83919 3.92218 3.96028 4.16500 4.24337 4.27294 4.28988 4.42843 4.46001 4.51961 4.55838 4.59578 4.67829 4.74806 4.78344 4.80183 4.88905 4.90883 4.92855 4.95964 5.08991 5.11575 5.14925 5.23841 5.34143 5.45045 5.48927 5.55085 5.70001 5.77533 6.27027 6.28370 6.44464 6.47859 7.18351 7.35034 8.09647 8.34272 9.29424 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027357 B = 0.002278 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.239897 B =12289.477617 C =13005.656125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.633 5.633 3 C 0.078 3.922 4 C 0.238 3.762 5 C -0.214 4.214 6 C -0.022 4.022 7 C -0.220 4.220 8 C 0.556 3.444 9 O -0.593 6.593 10 N -0.595 5.595 11 C 0.061 3.939 12 C 0.131 3.869 13 C -0.158 4.158 14 C 0.154 3.846 15 N -0.722 5.722 16 C -0.242 4.242 17 H 0.076 0.924 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.295 1.295 23 H -0.293 1.293 24 C -0.151 4.151 25 C -0.047 4.047 26 C -0.214 4.214 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.157 0.843 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.110 18.978 8.384 30.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.341 5.341 3 C -0.064 4.064 4 C 0.132 3.868 5 C -0.236 4.236 6 C -0.041 4.041 7 C -0.225 4.225 8 C 0.349 3.651 9 O -0.476 6.476 10 N -0.325 5.325 11 C -0.080 4.080 12 C 0.027 3.973 13 C -0.200 4.200 14 C 0.044 3.956 15 N -0.359 5.359 16 C -0.374 4.374 17 H 0.094 0.906 18 C -0.268 4.268 19 N -0.618 5.618 20 Si 0.801 3.199 21 H -0.192 1.192 22 H -0.222 1.222 23 H -0.220 1.220 24 C -0.191 4.191 25 C -0.066 4.066 26 C -0.236 4.236 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.161 0.839 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.175 0.825 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.322 18.557 8.707 30.306 hybrid contribution 0.945 -0.537 -0.410 1.162 sum -21.376 18.020 8.297 29.164 Atomic orbital electron populations 1.21849 0.78116 1.03853 1.02079 1.46581 1.06304 1.03344 1.77917 1.21964 0.98097 0.83964 1.02356 1.18220 0.91772 0.86444 0.90390 1.20733 1.00729 0.90328 1.11797 1.20972 0.92477 0.98332 0.92362 1.19536 0.94620 0.92365 1.16019 1.18795 0.80662 0.88519 0.77142 1.90699 1.68641 1.39603 1.48648 1.47727 1.17439 1.14765 1.52525 1.22546 1.00560 0.88126 0.96786 1.22266 0.90682 0.86410 0.97960 1.24075 0.93527 1.01480 1.00882 1.21607 0.86737 0.96367 0.90931 1.42485 1.12538 1.50197 1.30702 1.19729 0.92096 1.17368 1.08218 0.90562 1.25539 1.01957 1.01414 0.97847 1.69810 1.33920 1.40768 1.17334 0.85098 0.79796 0.77756 0.77263 1.19164 1.22243 1.22024 1.23774 0.97365 1.00645 0.97338 1.21940 1.01647 0.90547 0.92442 1.20945 0.92292 0.99132 1.11259 0.92611 0.89550 0.91016 0.89673 0.90978 0.91807 0.83876 0.86146 0.90330 0.91381 0.87957 0.87684 0.89825 0.91621 0.90461 0.79222 0.94027 0.91539 0.90075 0.82545 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.08 127.77 1.29 1.90 16 2 N -0.63 -7.27 3.39 -747.28 -2.53 -9.80 16 3 C 0.08 0.53 10.62 127.77 1.36 1.89 16 4 C 0.24 3.90 6.54 38.47 0.25 4.15 16 5 C -0.21 -3.91 9.13 22.36 0.20 -3.70 16 6 C -0.02 -0.51 9.58 22.50 0.22 -0.30 16 7 C -0.22 -5.63 5.50 -20.08 -0.11 -5.74 16 8 C 0.56 17.74 7.48 86.69 0.65 18.38 16 9 O -0.59 -23.22 16.10 -4.01 -0.06 -23.28 16 10 N -0.59 -17.35 3.08 -823.42 -2.54 -19.89 16 11 C 0.06 1.38 7.22 127.77 0.92 2.30 16 12 C 0.13 4.24 4.19 45.52 0.19 4.43 16 13 C -0.16 -5.39 7.36 31.12 0.23 -5.16 16 14 C 0.15 6.12 4.48 45.52 0.20 6.32 16 15 N -0.72 -35.95 5.40 -320.45 -1.73 -37.68 16 16 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 18 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 19 N -0.97 -58.47 13.06 21.65 0.28 -58.18 16 20 Si 0.97 46.00 29.55 68.60 2.03 48.02 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 C -0.15 -5.23 7.40 31.12 0.23 -5.00 16 25 C -0.05 -0.92 7.51 22.50 0.17 -0.75 16 26 C -0.21 -3.43 9.29 22.36 0.21 -3.23 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.09 0.33 8.07 -2.39 -0.02 0.31 16 29 H 0.07 0.53 6.43 -2.39 -0.02 0.51 16 30 H 0.08 0.51 5.28 -2.38 -0.01 0.50 16 31 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.14 1.99 6.28 -2.91 -0.02 1.98 16 34 H 0.12 2.99 7.83 -2.91 -0.02 2.96 16 35 H 0.08 1.50 7.04 -2.39 -0.02 1.48 16 36 H 0.07 1.68 6.60 -2.39 -0.02 1.66 16 37 H 0.10 1.94 5.10 -2.39 -0.01 1.93 16 38 H 0.11 3.62 7.27 -2.39 -0.02 3.61 16 39 H 0.08 2.86 6.79 -2.39 -0.02 2.85 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.08 3.08 8.10 -2.39 -0.02 3.06 16 42 H 0.38 19.87 7.92 -92.71 -0.73 19.13 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.08 2.82 6.83 -2.39 -0.02 2.80 16 46 H 0.16 2.60 4.42 -2.91 -0.01 2.59 16 47 H 0.15 1.64 5.71 -2.91 -0.02 1.62 16 Total: -1.00 -72.04 370.27 3.02 -69.03 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.26 Total: 32.63 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 7.31 Total: -0.84 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -6.52 Total: -125.55 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.06 Total: -23.28 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -72.04 3.02 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999746134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.675 kcal (2) G-P(sol) polarization free energy of solvation -72.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds