Wall clock time and date at job start Tue Mar 31 2020 11:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99791 * 2 1 4 4 C 1.38880 * 110.99655 * 123.95286 * 2 1 3 5 5 C 1.38950 * 120.17370 * 299.99907 * 4 2 1 6 6 C 1.37959 * 120.06022 * 179.72864 * 5 4 2 7 7 C 1.38604 * 120.42449 * 0.27166 * 6 5 4 8 8 C 1.37754 * 120.35387 * 0.02562 * 7 6 5 9 9 C 1.39732 * 119.92476 * 359.97438 * 8 7 6 10 10 C 1.47430 * 120.20872 * 179.97438 * 9 8 7 11 11 O 1.21608 * 119.99834 * 130.69121 * 10 9 8 12 12 N 1.34773 * 120.00140 * 310.69388 * 10 9 8 13 13 C 1.46500 * 120.00011 * 4.43302 * 12 10 9 14 14 C 1.46502 * 120.00152 * 184.43594 * 12 10 9 15 15 C 1.53781 * 113.61290 * 219.13466 * 14 12 10 16 16 C 1.53957 * 87.01911 * 220.04939 * 15 14 12 17 17 N 1.46501 * 113.53569 * 270.81531 * 16 15 14 18 18 C 1.36934 * 119.99775 * 252.49491 * 17 16 15 19 19 H 1.08000 * 119.99917 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00150 * 180.02562 * 18 17 16 21 21 N 1.31619 * 119.99828 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00174 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47249 * 59.99881 * 22 20 18 24 24 H 1.48501 * 109.47220 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47014 * 299.99840 * 22 20 18 26 26 C 1.53779 * 87.11012 * 25.36437 * 16 15 14 27 27 H 1.08997 * 109.47147 * 296.04947 * 1 2 3 28 28 H 1.08997 * 109.46801 * 56.04988 * 1 2 3 29 29 H 1.08999 * 109.47221 * 176.04589 * 1 2 3 30 30 H 1.09011 * 109.47142 * 183.95259 * 3 2 1 31 31 H 1.08999 * 109.47466 * 303.94821 * 3 2 1 32 32 H 1.09002 * 109.47357 * 63.95469 * 3 2 1 33 33 H 1.07994 * 119.96887 * 0.02562 * 5 4 2 34 34 H 1.08000 * 119.78726 * 180.26156 * 6 5 4 35 35 H 1.08003 * 119.82491 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.03882 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.47133 * 93.06475 * 13 12 10 38 38 H 1.08994 * 109.47702 * 213.06566 * 13 12 10 39 39 H 1.09009 * 109.47139 * 333.06852 * 13 12 10 40 40 H 1.08991 * 112.84865 * 350.33526 * 14 12 10 41 41 H 1.08993 * 113.61593 * 334.57010 * 15 14 12 42 42 H 1.08997 * 113.61240 * 105.47253 * 15 14 12 43 43 H 1.08996 * 113.74445 * 139.94618 * 16 15 14 44 44 H 0.96999 * 119.99922 * 72.49564 * 17 16 15 45 45 H 0.97003 * 119.99884 * 180.02562 * 21 20 18 46 46 H 1.09002 * 113.61670 * 220.09239 * 26 16 15 47 47 H 1.09004 * 113.61550 * 89.18875 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9667 -0.7242 1.0755 5 6 1.6562 -0.3456 2.3759 6 6 2.1472 -1.0699 3.4424 7 6 2.9564 -2.1746 3.2276 8 6 3.2801 -2.5616 1.9458 9 6 2.7908 -1.8386 0.8548 10 6 3.1338 -2.2469 -0.5197 11 8 2.2584 -2.3629 -1.3559 12 7 4.4174 -2.4917 -0.8495 13 6 5.4594 -2.4469 0.1793 14 6 4.7708 -2.8024 -2.2369 15 6 5.8459 -3.8941 -2.3690 16 6 6.4462 -3.0521 -3.5096 17 7 5.8901 -3.3706 -4.8270 18 6 6.6463 -4.0523 -5.7427 19 1 7.6528 -4.3547 -5.4938 20 6 6.1197 -4.3536 -6.9912 21 7 4.8933 -3.9845 -7.2947 22 14 7.1516 -5.2829 -8.2406 23 1 7.5318 -6.6057 -7.6829 24 1 6.3649 -5.4786 -9.4849 25 1 8.3781 -4.5039 -8.5472 26 6 5.7937 -1.8284 -2.8450 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0829 1.3432 -0.0708 31 1 1.5899 1.9163 -0.8525 32 1 1.7044 1.8723 0.9233 33 1 1.0260 0.5136 2.5517 34 1 1.8996 -0.7743 4.4512 35 1 3.3351 -2.7349 4.0696 36 1 3.9113 -3.4229 1.7842 37 1 5.6134 -3.4471 0.5842 38 1 6.3890 -2.0859 -0.2605 39 1 5.1509 -1.7744 0.9798 40 1 3.8985 -2.9700 -2.8685 41 1 6.4954 -3.9749 -1.4975 42 1 5.4528 -4.8567 -2.6959 43 1 7.5357 -3.0217 -3.5061 44 1 4.9863 -3.0985 -5.0506 45 1 4.5252 -4.1954 -8.1670 46 1 5.3584 -1.1258 -3.5557 47 1 6.4290 -1.3434 -2.1038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999912035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:43 Heat of formation + Delta-G solvation = 54.479035 kcal Electronic energy + Delta-G solvation = -26930.607251 eV Core-core repulsion = 23308.342670 eV Total energy + Delta-G solvation = -3622.264581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73060 -39.33954 -37.61862 -36.78553 -34.65624 -32.98719 -31.31356 -30.17349 -29.63713 -27.76245 -26.97715 -25.29552 -25.01524 -24.48368 -23.61055 -22.34068 -21.25088 -19.69462 -18.16722 -17.56685 -17.24557 -16.76139 -16.28190 -15.87511 -15.27537 -15.07728 -14.91095 -14.78137 -14.35045 -13.99404 -13.89112 -13.63603 -13.04337 -12.97229 -12.76873 -12.61955 -12.51459 -12.43451 -12.17328 -11.93387 -11.90961 -11.84135 -11.81355 -11.43332 -11.39172 -10.82139 -10.71543 -10.16937 -10.15343 -9.78476 -9.62574 -9.44835 -9.15027 -8.94510 -8.85988 -8.60653 -8.24894 -6.96177 -5.74579 -3.04726 0.79996 0.99223 2.91341 3.19606 3.45997 3.50044 3.51633 3.55294 3.63812 4.49999 4.59058 4.59800 4.69590 4.87558 5.04594 5.06900 5.07993 5.17382 5.22214 5.24316 5.32082 5.35814 5.41602 5.47097 5.47946 5.54822 5.62860 5.67556 5.71772 5.78716 5.92983 5.97348 6.03576 6.12243 6.14453 6.16373 6.32347 6.46229 6.50411 6.67214 6.70504 6.78364 6.88418 7.11046 7.18889 7.68679 7.72850 8.43478 8.48499 9.54007 10.11365 10.45530 11.47457 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.002895 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.396528 B = 9668.441538 C =10353.510933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.506 5.506 3 C 0.030 3.970 4 C 0.137 3.863 5 C -0.158 4.158 6 C -0.095 4.095 7 C -0.129 4.129 8 C -0.086 4.086 9 C -0.101 4.101 10 C 0.562 3.438 11 O -0.511 6.511 12 N -0.601 5.601 13 C 0.075 3.925 14 C 0.129 3.871 15 C -0.182 4.182 16 C 0.172 3.828 17 N -0.706 5.706 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.167 4.167 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.070 0.930 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 9.038 25.242 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.226 5.226 3 C -0.116 4.116 4 C 0.042 3.958 5 C -0.178 4.178 6 C -0.114 4.114 7 C -0.147 4.147 8 C -0.105 4.105 9 C -0.105 4.105 10 C 0.349 3.651 11 O -0.386 6.386 12 N -0.334 5.334 13 C -0.069 4.069 14 C 0.027 3.973 15 C -0.224 4.224 16 C 0.059 3.941 17 N -0.344 5.344 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.208 4.208 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.428 8.674 24.147 26.037 hybrid contribution -0.046 -0.023 0.137 0.147 sum -4.474 8.650 24.285 26.165 Atomic orbital electron populations 1.22397 0.85122 1.03162 1.00384 1.59174 1.08960 1.13834 1.40610 1.22456 1.01110 0.87278 1.00761 1.18667 0.94697 0.93558 0.88902 1.21622 1.02098 1.01164 0.92898 1.21130 0.96564 0.94968 0.98720 1.21091 0.99234 0.97590 0.96803 1.21403 0.98271 0.99139 0.91693 1.20031 0.99741 0.96728 0.93989 1.18024 0.82631 0.77344 0.87119 1.90804 1.47240 1.50275 1.50268 1.47848 1.06382 1.69529 1.09614 1.21871 0.92236 1.01291 0.91452 1.22705 0.97588 0.96627 0.80413 1.24324 0.98054 0.99297 1.00747 1.20938 0.96115 0.91604 0.85417 1.42211 1.16251 1.66398 1.09544 1.19222 0.96642 1.28353 0.93433 0.91023 1.24784 0.96593 1.01498 0.97901 1.69665 1.14594 1.51270 1.22179 0.86247 0.79155 0.79716 0.80912 1.21228 1.21687 1.21222 1.23944 0.98461 0.98621 0.99749 0.95509 0.90680 0.90779 0.91245 0.90568 0.95313 0.85865 0.85802 0.85393 0.84889 0.92753 0.90892 0.91133 0.86403 0.91106 0.91007 0.91498 0.77896 0.93327 0.91144 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 9.34 60.07 0.56 0.95 16 2 N -0.51 -6.48 3.91 -186.63 -0.73 -7.21 16 3 C 0.03 0.31 9.38 60.06 0.56 0.87 16 4 C 0.14 1.68 4.70 -83.61 -0.39 1.28 16 5 C -0.16 -1.48 8.55 -39.42 -0.34 -1.82 16 6 C -0.09 -0.75 10.03 -39.55 -0.40 -1.14 16 7 C -0.13 -1.03 10.02 -39.62 -0.40 -1.43 16 8 C -0.09 -0.87 7.61 -39.20 -0.30 -1.16 16 9 C -0.10 -1.33 4.90 -104.80 -0.51 -1.84 16 10 C 0.56 9.33 6.92 -12.52 -0.09 9.24 16 11 O -0.51 -10.64 15.93 5.27 0.08 -10.56 16 12 N -0.60 -9.06 3.08 -174.27 -0.54 -9.60 16 13 C 0.07 0.80 7.65 59.85 0.46 1.26 16 14 C 0.13 2.30 4.10 -67.12 -0.28 2.02 16 15 C -0.18 -3.21 7.37 -25.83 -0.19 -3.40 16 16 C 0.17 3.46 4.57 -67.03 -0.31 3.15 16 17 N -0.71 -18.06 5.31 -52.55 -0.28 -18.34 16 18 C -0.25 -6.88 9.97 -15.06 -0.15 -7.03 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 22 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C -0.17 -2.90 7.38 -25.92 -0.19 -3.10 16 27 H 0.03 0.23 7.11 -51.93 -0.37 -0.14 16 28 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.03 0.24 7.33 -51.93 -0.38 -0.14 16 33 H 0.12 0.96 7.01 -52.49 -0.37 0.60 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.13 1.17 6.59 -52.49 -0.35 0.83 16 37 H 0.05 0.50 7.54 -51.93 -0.39 0.11 16 38 H 0.07 0.74 6.47 -51.93 -0.34 0.40 16 39 H 0.07 0.67 5.68 -51.92 -0.30 0.37 16 40 H 0.12 2.54 7.20 -51.93 -0.37 2.16 16 41 H 0.07 1.04 6.86 -51.93 -0.36 0.68 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 44 H 0.39 10.68 7.90 -40.82 -0.32 10.36 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.08 1.11 6.78 -51.93 -0.35 0.76 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -34.01 375.75 -9.38 -43.40 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.24 Total: 9.57 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.05 Total: -2.56 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.82 Total: -63.05 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.01 -9.38 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999912035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.875 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds