Wall clock time and date at job start Tue Mar 31 2020 11:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99791 * 2 1 4 4 C 1.38880 * 110.99655 * 123.95286 * 2 1 3 5 5 C 1.38950 * 120.17370 * 299.99907 * 4 2 1 6 6 C 1.37959 * 120.06022 * 179.72864 * 5 4 2 7 7 C 1.38604 * 120.42449 * 0.27166 * 6 5 4 8 8 C 1.37754 * 120.35387 * 0.02562 * 7 6 5 9 9 C 1.39732 * 119.92476 * 359.97438 * 8 7 6 10 10 C 1.47430 * 120.20872 * 179.97438 * 9 8 7 11 11 O 1.21608 * 119.99834 * 130.69121 * 10 9 8 12 12 N 1.34773 * 120.00140 * 310.69388 * 10 9 8 13 13 C 1.46500 * 120.00011 * 4.43302 * 12 10 9 14 14 C 1.46502 * 120.00152 * 184.43594 * 12 10 9 15 15 C 1.53781 * 113.61290 * 219.13466 * 14 12 10 16 16 C 1.53957 * 87.01911 * 220.04939 * 15 14 12 17 17 N 1.46501 * 113.53569 * 270.81531 * 16 15 14 18 18 C 1.36934 * 119.99775 * 252.49491 * 17 16 15 19 19 H 1.08000 * 119.99917 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00150 * 180.02562 * 18 17 16 21 21 N 1.31619 * 119.99828 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00174 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47249 * 59.99881 * 22 20 18 24 24 H 1.48501 * 109.47220 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47014 * 299.99840 * 22 20 18 26 26 C 1.53779 * 87.11012 * 25.36437 * 16 15 14 27 27 H 1.08997 * 109.47147 * 296.04947 * 1 2 3 28 28 H 1.08997 * 109.46801 * 56.04988 * 1 2 3 29 29 H 1.08999 * 109.47221 * 176.04589 * 1 2 3 30 30 H 1.09011 * 109.47142 * 183.95259 * 3 2 1 31 31 H 1.08999 * 109.47466 * 303.94821 * 3 2 1 32 32 H 1.09002 * 109.47357 * 63.95469 * 3 2 1 33 33 H 1.07994 * 119.96887 * 0.02562 * 5 4 2 34 34 H 1.08000 * 119.78726 * 180.26156 * 6 5 4 35 35 H 1.08003 * 119.82491 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.03882 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.47133 * 93.06475 * 13 12 10 38 38 H 1.08994 * 109.47702 * 213.06566 * 13 12 10 39 39 H 1.09009 * 109.47139 * 333.06852 * 13 12 10 40 40 H 1.08991 * 112.84865 * 350.33526 * 14 12 10 41 41 H 1.08993 * 113.61593 * 334.57010 * 15 14 12 42 42 H 1.08997 * 113.61240 * 105.47253 * 15 14 12 43 43 H 1.08996 * 113.74445 * 139.94618 * 16 15 14 44 44 H 0.96999 * 119.99922 * 72.49564 * 17 16 15 45 45 H 0.97003 * 119.99884 * 180.02562 * 21 20 18 46 46 H 1.09002 * 113.61670 * 220.09239 * 26 16 15 47 47 H 1.09004 * 113.61550 * 89.18875 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9667 -0.7242 1.0755 5 6 1.6562 -0.3456 2.3759 6 6 2.1472 -1.0699 3.4424 7 6 2.9564 -2.1746 3.2276 8 6 3.2801 -2.5616 1.9458 9 6 2.7908 -1.8386 0.8548 10 6 3.1338 -2.2469 -0.5197 11 8 2.2584 -2.3629 -1.3559 12 7 4.4174 -2.4917 -0.8495 13 6 5.4594 -2.4469 0.1793 14 6 4.7708 -2.8024 -2.2369 15 6 5.8459 -3.8941 -2.3690 16 6 6.4462 -3.0521 -3.5096 17 7 5.8901 -3.3706 -4.8270 18 6 6.6463 -4.0523 -5.7427 19 1 7.6528 -4.3547 -5.4938 20 6 6.1197 -4.3536 -6.9912 21 7 4.8933 -3.9845 -7.2947 22 14 7.1516 -5.2829 -8.2406 23 1 7.5318 -6.6057 -7.6829 24 1 6.3649 -5.4786 -9.4849 25 1 8.3781 -4.5039 -8.5472 26 6 5.7937 -1.8284 -2.8450 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0829 1.3432 -0.0708 31 1 1.5899 1.9163 -0.8525 32 1 1.7044 1.8723 0.9233 33 1 1.0260 0.5136 2.5517 34 1 1.8996 -0.7743 4.4512 35 1 3.3351 -2.7349 4.0696 36 1 3.9113 -3.4229 1.7842 37 1 5.6134 -3.4471 0.5842 38 1 6.3890 -2.0859 -0.2605 39 1 5.1509 -1.7744 0.9798 40 1 3.8985 -2.9700 -2.8685 41 1 6.4954 -3.9749 -1.4975 42 1 5.4528 -4.8567 -2.6959 43 1 7.5357 -3.0217 -3.5061 44 1 4.9863 -3.0985 -5.0506 45 1 4.5252 -4.1954 -8.1670 46 1 5.3584 -1.1258 -3.5557 47 1 6.4290 -1.3434 -2.1038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999912035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:42 Heat of formation + Delta-G solvation = 31.873160 kcal Electronic energy + Delta-G solvation = -26931.587515 eV Core-core repulsion = 23308.342670 eV Total energy + Delta-G solvation = -3623.244845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.74397 -40.51484 -39.00211 -37.58149 -36.13170 -34.79587 -32.36680 -31.46095 -30.90759 -28.58308 -27.99939 -26.69407 -26.41371 -25.68621 -25.03845 -23.58289 -22.12792 -20.80666 -19.67842 -19.34438 -18.40322 -17.83599 -17.39938 -16.82703 -16.68895 -16.23312 -15.97560 -15.87967 -15.62896 -15.28991 -15.14456 -14.72671 -14.58010 -14.22765 -13.98096 -13.65055 -13.40630 -13.33335 -13.27043 -13.24095 -13.18386 -12.89439 -12.73164 -12.71906 -12.70889 -12.49270 -12.20852 -12.12773 -11.80208 -11.67114 -11.23063 -10.91186 -10.75367 -9.89554 -9.71985 -9.49288 -9.41355 -9.04333 -7.94753 -5.25572 0.01265 0.29917 1.47019 1.51246 1.57276 1.78690 2.09358 2.55796 2.73447 2.85138 3.36568 3.53841 3.71327 3.86730 3.87251 3.92240 4.08734 4.15525 4.25978 4.27994 4.30397 4.33238 4.35825 4.45026 4.52284 4.59164 4.64935 4.67836 4.75847 4.78943 4.87146 4.89242 4.91303 4.92229 5.05127 5.13365 5.24183 5.32037 5.35024 5.39396 5.47558 5.52598 5.74608 5.80924 5.90869 6.26467 6.37078 6.52755 7.27087 7.30749 8.06546 8.29023 9.28772 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.002895 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.396528 B = 9668.441538 C =10353.510933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.034 3.966 4 C 0.119 3.881 5 C -0.159 4.159 6 C -0.083 4.083 7 C -0.121 4.121 8 C -0.086 4.086 9 C -0.131 4.131 10 C 0.556 3.444 11 O -0.573 6.573 12 N -0.598 5.598 13 C 0.067 3.933 14 C 0.132 3.868 15 C -0.159 4.159 16 C 0.155 3.845 17 N -0.725 5.725 18 C -0.244 4.244 19 H 0.085 0.915 20 C -0.081 4.081 21 N -0.974 5.974 22 Si 0.979 3.021 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.273 1.273 26 C -0.147 4.147 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.144 0.856 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.370 0.630 45 H 0.251 0.749 46 H 0.046 0.954 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 9.385 29.359 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.261 5.261 3 C -0.112 4.112 4 C 0.024 3.976 5 C -0.179 4.179 6 C -0.102 4.102 7 C -0.138 4.138 8 C -0.105 4.105 9 C -0.135 4.135 10 C 0.345 3.655 11 O -0.452 6.452 12 N -0.330 5.330 13 C -0.074 4.074 14 C 0.028 3.972 15 C -0.201 4.201 16 C 0.044 3.956 17 N -0.362 5.362 18 C -0.375 4.375 19 H 0.103 0.897 20 C -0.272 4.272 21 N -0.624 5.624 22 Si 0.807 3.193 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.199 1.199 26 C -0.187 4.187 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.161 0.839 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.201 0.799 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.299 9.030 28.353 29.845 hybrid contribution -0.686 -0.094 -0.976 1.196 sum -2.985 8.936 27.377 28.953 Atomic orbital electron populations 1.22331 0.84683 1.01913 1.01691 1.59089 1.09745 1.15144 1.42151 1.22426 1.00352 0.86510 1.01892 1.18855 0.95097 0.93711 0.89917 1.21792 1.02266 1.01909 0.91950 1.21582 0.94844 0.93934 0.99800 1.21482 0.98235 0.97441 0.96688 1.21553 0.98230 0.98958 0.91720 1.19912 1.02443 0.98698 0.92494 1.18722 0.82313 0.76140 0.88310 1.90763 1.49004 1.52957 1.52479 1.47878 1.07234 1.68722 1.09132 1.22204 0.91195 1.03244 0.90766 1.22237 0.95881 0.97205 0.81890 1.24129 0.97857 0.97180 1.00923 1.21254 0.96817 0.93650 0.83846 1.42432 1.15532 1.66644 1.11583 1.19705 0.97079 1.27012 0.93751 0.89721 1.25691 0.97863 1.03408 1.00272 1.69860 1.16697 1.53543 1.22332 0.85129 0.77589 0.78683 0.77849 1.20176 1.22537 1.19921 1.23809 0.98129 0.97180 0.99582 0.93002 0.90615 0.93112 0.92248 0.90641 0.93038 0.84261 0.82355 0.81969 0.83859 0.90561 0.89583 0.89413 0.91464 0.86753 0.93837 0.90070 0.79899 0.94076 0.93550 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 9.34 127.69 1.19 2.09 16 2 N -0.54 -14.19 3.91 -744.37 -2.91 -17.10 16 3 C 0.03 0.69 9.38 127.69 1.20 1.89 16 4 C 0.12 2.84 4.70 38.71 0.18 3.02 16 5 C -0.16 -2.55 8.55 22.37 0.19 -2.36 16 6 C -0.08 -0.93 10.03 22.29 0.22 -0.71 16 7 C -0.12 -1.39 10.02 22.24 0.22 -1.17 16 8 C -0.09 -1.50 7.61 22.52 0.17 -1.33 16 9 C -0.13 -3.39 4.90 -19.98 -0.10 -3.49 16 10 C 0.56 19.14 6.92 86.67 0.60 19.74 16 11 O -0.57 -25.92 15.93 -4.06 -0.06 -25.98 16 12 N -0.60 -17.91 3.08 -823.52 -2.54 -20.45 16 13 C 0.07 1.24 7.65 127.77 0.98 2.22 16 14 C 0.13 4.84 4.10 45.52 0.19 5.02 16 15 C -0.16 -5.52 7.37 31.18 0.23 -5.29 16 16 C 0.16 6.18 4.57 45.58 0.21 6.39 16 17 N -0.72 -38.38 5.31 -320.17 -1.70 -40.08 16 18 C -0.24 -13.86 9.97 84.03 0.84 -13.02 16 19 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 20 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 21 N -0.97 -62.60 13.06 21.65 0.28 -62.32 16 22 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 23 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 24 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 C -0.15 -5.08 7.38 31.12 0.23 -4.85 16 27 H 0.05 0.86 7.11 -2.39 -0.02 0.84 16 28 H 0.08 1.61 8.12 -2.39 -0.02 1.59 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.07 1.47 8.12 -2.39 -0.02 1.45 16 32 H 0.05 0.77 7.33 -2.39 -0.02 0.76 16 33 H 0.14 1.71 7.01 -2.91 -0.02 1.69 16 34 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 36 H 0.14 2.09 6.59 -2.91 -0.02 2.07 16 37 H 0.08 1.11 7.54 -2.39 -0.02 1.09 16 38 H 0.09 1.38 6.47 -2.39 -0.02 1.36 16 39 H 0.09 1.37 5.68 -2.38 -0.01 1.36 16 40 H 0.07 3.18 7.20 -2.39 -0.02 3.17 16 41 H 0.11 2.96 6.86 -2.39 -0.02 2.94 16 42 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 44 H 0.37 21.76 7.90 -92.71 -0.73 21.03 16 45 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.12 3.07 6.78 -2.39 -0.02 3.05 16 Total: -1.00 -80.64 375.75 2.35 -78.28 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.24 Total: 34.59 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 7.02 Total: 3.86 kcal Atomic # 7 Polarization: -133.09 SS G_CDS: -6.87 Total: -139.96 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.06 Total: -25.98 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -80.64 2.35 -78.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999912035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.158 kcal (2) G-P(sol) polarization free energy of solvation -80.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds