Wall clock time and date at job start Tue Mar 31 2020 11:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 120.00090 * 2 1 4 4 O 1.21623 * 120.00169 * 179.32072 * 3 2 1 5 5 C 1.47267 * 119.99774 * 359.31685 * 3 2 1 6 6 C 1.46743 * 126.92482 * 10.69194 * 5 3 2 7 7 C 1.34066 * 106.31135 * 179.97438 * 6 5 3 8 8 N 1.37081 * 109.03928 * 0.02947 * 7 6 5 9 9 C 1.34575 * 109.95386 * 359.69887 * 8 7 6 10 10 C 1.47036 * 123.95302 * 179.90789 * 8 7 6 11 11 C 1.53141 * 108.83584 * 342.45526 * 10 8 7 12 12 C 1.53135 * 109.59467 * 51.21194 * 11 10 8 13 13 C 1.51085 * 126.72929 * 180.02562 * 7 6 5 14 14 C 1.46490 * 120.00016 * 179.97438 * 2 1 3 15 15 C 1.53787 * 113.61344 * 60.00221 * 14 2 1 16 16 C 1.53773 * 87.08360 * 220.01734 * 15 14 2 17 17 N 1.46506 * 113.61467 * 139.97677 * 16 15 14 18 18 C 1.36943 * 119.99589 * 156.25116 * 17 16 15 19 19 H 1.08001 * 120.00056 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99744 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99852 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00260 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46776 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47376 * 119.99740 * 22 20 18 25 25 H 1.48502 * 109.47157 * 240.00229 * 22 20 18 26 26 C 1.53783 * 87.17508 * 25.38971 * 16 15 14 27 27 H 1.09008 * 109.47280 * 276.64308 * 1 2 3 28 28 H 1.09001 * 109.46940 * 36.63794 * 1 2 3 29 29 H 1.08998 * 109.47539 * 156.64342 * 1 2 3 30 30 H 1.08000 * 126.84405 * 359.97438 * 6 5 3 31 31 H 1.07988 * 125.73201 * 180.34368 * 9 8 7 32 32 H 1.08997 * 109.57628 * 102.26008 * 10 8 7 33 33 H 1.08999 * 109.57702 * 222.64968 * 10 8 7 34 34 H 1.08999 * 109.45419 * 171.24441 * 11 10 8 35 35 H 1.09000 * 109.45509 * 291.17387 * 11 10 8 36 36 H 1.08998 * 109.52493 * 49.73608 * 12 11 10 37 37 H 1.08997 * 109.52553 * 169.86793 * 12 11 10 38 38 H 1.09008 * 109.71616 * 283.89623 * 13 7 6 39 39 H 1.09000 * 109.72654 * 44.54309 * 13 7 6 40 40 H 1.09004 * 112.91260 * 191.24852 * 14 2 1 41 41 H 1.09001 * 113.61180 * 105.46830 * 15 14 2 42 42 H 1.09001 * 113.61516 * 334.56851 * 15 14 2 43 43 H 1.09001 * 113.62073 * 270.79888 * 16 15 14 44 44 H 0.96993 * 120.00067 * 336.53607 * 17 16 15 45 45 H 0.97005 * 120.00194 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.61623 * 89.15770 * 26 16 15 47 47 H 1.09004 * 113.61471 * 220.06451 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3551 1.1673 0.0125 5 6 1.4026 2.4426 -0.0152 6 6 -0.0386 2.6309 0.1864 7 6 -0.2634 3.9490 0.0893 8 7 0.9241 4.5881 -0.1568 9 6 1.9254 3.6908 -0.2141 10 6 1.0543 6.0431 -0.3242 11 6 -0.3284 6.6328 -0.6170 12 6 -1.3277 6.1466 0.4366 13 6 -1.5945 4.6509 0.2234 14 6 2.1974 -1.2686 0.0006 15 6 1.8953 -2.1549 -1.2194 16 6 1.9129 -3.3526 -0.2550 17 7 0.8715 -4.3449 -0.5327 18 6 1.0341 -5.6412 -0.1221 19 1 1.9298 -5.9318 0.4067 20 6 0.0477 -6.5816 -0.3857 21 7 -1.0436 -6.2275 -1.0307 22 14 0.2691 -8.3497 0.1750 23 1 1.5722 -8.4879 0.8737 24 1 -0.8308 -8.7162 1.1029 25 1 0.2418 -9.2504 -1.0054 26 6 1.5384 -2.3625 0.8605 27 1 -0.3634 0.1189 1.0208 28 1 -0.3633 0.8246 -0.6133 29 1 -0.3634 -0.9434 -0.4074 30 1 -0.7721 1.8611 0.3755 31 1 2.9664 3.9179 -0.3897 32 1 1.4521 6.4818 0.5909 33 1 1.7259 6.2565 -1.1557 34 1 -0.2723 7.7210 -0.5890 35 1 -0.6580 6.3121 -1.6052 36 1 -0.9134 6.3052 1.4322 37 1 -2.2605 6.7016 0.3375 38 1 -2.1793 4.5070 -0.6852 39 1 -2.1379 4.2490 1.0785 40 1 3.2624 -1.1437 0.1964 41 1 2.6997 -2.1746 -1.9547 42 1 0.9182 -1.9669 -1.6644 43 1 2.8997 -3.7983 -0.1301 44 1 0.0688 -4.0848 -1.0110 45 1 -1.7328 -6.8847 -1.2152 46 1 0.4635 -2.2313 0.9852 47 1 2.0551 -2.5495 1.8019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999934608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:59 Heat of formation + Delta-G solvation = 58.438164 kcal Electronic energy + Delta-G solvation = -26241.538923 eV Core-core repulsion = 22619.446023 eV Total energy + Delta-G solvation = -3622.092900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.76867 -39.69224 -37.73601 -36.12911 -34.68655 -33.27475 -32.73682 -30.15589 -29.47541 -27.98573 -26.73579 -25.22979 -24.96684 -24.27603 -23.05447 -21.87195 -21.14360 -19.49271 -18.80450 -18.27591 -17.15330 -17.02499 -16.39024 -16.07000 -15.80452 -15.07506 -14.66617 -14.54698 -14.41433 -14.15867 -13.98626 -13.97775 -13.72165 -13.06864 -13.00701 -12.79057 -12.66809 -12.43135 -11.99452 -11.81526 -11.70224 -11.57367 -11.46566 -11.27945 -11.17642 -11.10250 -10.87211 -10.49266 -10.34578 -10.16698 -9.90093 -9.63869 -9.42653 -8.85509 -8.68358 -8.39022 -8.08805 -6.93428 -5.76308 -3.04600 1.78434 2.27375 2.54791 3.39760 3.44706 3.50955 3.52871 3.69328 4.03150 4.16457 4.24818 4.42855 4.61863 4.74235 4.82388 4.91925 4.97510 5.03185 5.18321 5.25261 5.26582 5.33627 5.34227 5.38331 5.40675 5.50992 5.51809 5.55062 5.68284 5.72952 5.79207 5.90570 5.94828 5.99556 6.07975 6.28877 6.39582 6.44382 6.61259 6.66363 6.69253 6.90808 6.97719 7.07790 7.18315 7.73339 7.79790 8.42392 8.55440 9.53728 10.11397 10.46266 11.46263 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028379 B = 0.002342 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.398786 B =11953.987073 C =12671.855637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.591 5.591 3 C 0.588 3.412 4 O -0.562 6.562 5 C -0.225 4.225 6 C -0.177 4.177 7 C 0.011 3.989 8 N -0.444 5.444 9 C 0.073 3.927 10 C 0.102 3.898 11 C -0.134 4.134 12 C -0.125 4.125 13 C -0.052 4.052 14 C 0.118 3.882 15 C -0.162 4.162 16 C 0.168 3.832 17 N -0.711 5.711 18 C -0.240 4.240 19 H 0.072 0.928 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.174 4.174 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.083 0.917 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 29.529 1.565 29.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.321 5.321 3 C 0.378 3.622 4 O -0.443 6.443 5 C -0.235 4.235 6 C -0.201 4.201 7 C -0.097 4.097 8 N -0.121 5.121 9 C -0.062 4.062 10 C -0.019 4.019 11 C -0.172 4.172 12 C -0.163 4.163 13 C -0.090 4.090 14 C 0.014 3.986 15 C -0.202 4.202 16 C 0.056 3.944 17 N -0.349 5.349 18 C -0.371 4.371 19 H 0.090 0.910 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.215 4.215 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.180 0.820 31 H 0.189 0.811 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.101 0.899 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.250 29.673 1.590 29.716 hybrid contribution -0.240 -0.888 0.147 0.931 sum -0.490 28.785 1.737 28.841 Atomic orbital electron populations 1.22391 0.80067 1.03913 1.01527 1.47572 1.06756 1.05513 1.72307 1.17436 0.86311 0.82848 0.75571 1.90725 1.13599 1.87624 1.52337 1.20339 0.93820 0.92572 1.16757 1.22459 0.94923 0.94538 1.08144 1.20393 0.87654 0.92091 1.09521 1.43933 1.06731 1.06568 1.54880 1.21610 0.93515 0.87653 1.03401 1.22069 0.99337 0.77620 1.02914 1.21848 0.93585 1.01179 1.00549 1.21642 0.99644 0.95875 0.99132 1.20366 0.91711 0.93797 1.03121 1.22589 0.97248 0.80451 0.98265 1.23900 1.01785 0.97220 0.97271 1.21358 0.93615 0.87317 0.92131 1.42368 1.19491 1.05812 1.67189 1.19369 1.02514 0.85649 1.29602 0.90964 1.24760 0.96806 0.98279 1.01198 1.69672 1.08884 1.33603 1.46007 0.86112 0.77243 0.85046 0.77766 1.20515 1.21905 1.21904 1.24341 1.01046 0.96669 0.99493 0.92672 0.89645 0.90482 0.82004 0.81126 0.89997 0.89302 0.89643 0.90646 0.91358 0.90595 0.90083 0.89517 0.86966 0.91855 0.90112 0.90410 0.78133 0.93568 0.89894 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 7.46 59.85 0.45 1.28 16 2 N -0.59 -9.34 3.08 -174.22 -0.54 -9.88 16 3 C 0.59 9.84 7.67 -12.59 -0.10 9.75 16 4 O -0.56 -11.06 16.41 5.26 0.09 -10.97 16 5 C -0.22 -3.10 6.06 -103.32 -0.63 -3.72 16 6 C -0.18 -2.01 8.74 -37.62 -0.33 -2.34 16 7 C 0.01 0.11 6.53 -81.53 -0.53 -0.43 16 8 N -0.44 -4.10 3.11 -111.87 -0.35 -4.45 16 9 C 0.07 0.85 11.20 -16.88 -0.19 0.66 16 10 C 0.10 0.55 6.89 -3.68 -0.03 0.53 16 11 C -0.13 -0.55 5.91 -26.59 -0.16 -0.71 16 12 C -0.13 -0.58 5.97 -26.45 -0.16 -0.73 16 13 C -0.05 -0.33 6.26 -27.48 -0.17 -0.50 16 14 C 0.12 2.01 4.21 -67.03 -0.28 1.73 16 15 C -0.16 -2.88 7.34 -25.92 -0.19 -3.07 16 16 C 0.17 3.43 4.47 -67.12 -0.30 3.13 16 17 N -0.71 -17.88 5.41 -52.63 -0.28 -18.17 16 18 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 22 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C -0.17 -3.15 7.29 -25.82 -0.19 -3.34 16 27 H 0.05 0.66 7.63 -51.92 -0.40 0.26 16 28 H 0.09 0.98 4.85 -51.93 -0.25 0.73 16 29 H 0.08 1.07 6.10 -51.93 -0.32 0.75 16 30 H 0.16 1.61 4.84 -52.49 -0.25 1.36 16 31 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.36 8.11 -51.93 -0.42 -0.07 16 36 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.11 2.00 7.23 -51.93 -0.38 1.63 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 43 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 44 H 0.38 10.19 7.91 -40.82 -0.32 9.86 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.08 1.54 6.58 -51.93 -0.34 1.20 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -34.18 369.20 -10.10 -44.28 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.24 Total: 8.68 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.04 Total: -5.13 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.45 Total: -59.89 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.18 -10.10 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999934608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.713 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds