Wall clock time and date at job start Tue Mar 31 2020 11:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 120.00090 * 2 1 4 4 O 1.21623 * 120.00169 * 179.32072 * 3 2 1 5 5 C 1.47267 * 119.99774 * 359.31685 * 3 2 1 6 6 C 1.46743 * 126.92482 * 10.69194 * 5 3 2 7 7 C 1.34066 * 106.31135 * 179.97438 * 6 5 3 8 8 N 1.37081 * 109.03928 * 0.02947 * 7 6 5 9 9 C 1.34575 * 109.95386 * 359.69887 * 8 7 6 10 10 C 1.47036 * 123.95302 * 179.90789 * 8 7 6 11 11 C 1.53141 * 108.83584 * 342.45526 * 10 8 7 12 12 C 1.53135 * 109.59467 * 51.21194 * 11 10 8 13 13 C 1.51085 * 126.72929 * 180.02562 * 7 6 5 14 14 C 1.46490 * 120.00016 * 179.97438 * 2 1 3 15 15 C 1.53787 * 113.61344 * 60.00221 * 14 2 1 16 16 C 1.53773 * 87.08360 * 220.01734 * 15 14 2 17 17 N 1.46506 * 113.61467 * 139.97677 * 16 15 14 18 18 C 1.36943 * 119.99589 * 156.25116 * 17 16 15 19 19 H 1.08001 * 120.00056 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99744 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99852 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00260 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46776 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47376 * 119.99740 * 22 20 18 25 25 H 1.48502 * 109.47157 * 240.00229 * 22 20 18 26 26 C 1.53783 * 87.17508 * 25.38971 * 16 15 14 27 27 H 1.09008 * 109.47280 * 276.64308 * 1 2 3 28 28 H 1.09001 * 109.46940 * 36.63794 * 1 2 3 29 29 H 1.08998 * 109.47539 * 156.64342 * 1 2 3 30 30 H 1.08000 * 126.84405 * 359.97438 * 6 5 3 31 31 H 1.07988 * 125.73201 * 180.34368 * 9 8 7 32 32 H 1.08997 * 109.57628 * 102.26008 * 10 8 7 33 33 H 1.08999 * 109.57702 * 222.64968 * 10 8 7 34 34 H 1.08999 * 109.45419 * 171.24441 * 11 10 8 35 35 H 1.09000 * 109.45509 * 291.17387 * 11 10 8 36 36 H 1.08998 * 109.52493 * 49.73608 * 12 11 10 37 37 H 1.08997 * 109.52553 * 169.86793 * 12 11 10 38 38 H 1.09008 * 109.71616 * 283.89623 * 13 7 6 39 39 H 1.09000 * 109.72654 * 44.54309 * 13 7 6 40 40 H 1.09004 * 112.91260 * 191.24852 * 14 2 1 41 41 H 1.09001 * 113.61180 * 105.46830 * 15 14 2 42 42 H 1.09001 * 113.61516 * 334.56851 * 15 14 2 43 43 H 1.09001 * 113.62073 * 270.79888 * 16 15 14 44 44 H 0.96993 * 120.00067 * 336.53607 * 17 16 15 45 45 H 0.97005 * 120.00194 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.61623 * 89.15770 * 26 16 15 47 47 H 1.09004 * 113.61471 * 220.06451 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3551 1.1673 0.0125 5 6 1.4026 2.4426 -0.0152 6 6 -0.0386 2.6309 0.1864 7 6 -0.2634 3.9490 0.0893 8 7 0.9241 4.5881 -0.1568 9 6 1.9254 3.6908 -0.2141 10 6 1.0543 6.0431 -0.3242 11 6 -0.3284 6.6328 -0.6170 12 6 -1.3277 6.1466 0.4366 13 6 -1.5945 4.6509 0.2234 14 6 2.1974 -1.2686 0.0006 15 6 1.8953 -2.1549 -1.2194 16 6 1.9129 -3.3526 -0.2550 17 7 0.8715 -4.3449 -0.5327 18 6 1.0341 -5.6412 -0.1221 19 1 1.9298 -5.9318 0.4067 20 6 0.0477 -6.5816 -0.3857 21 7 -1.0436 -6.2275 -1.0307 22 14 0.2691 -8.3497 0.1750 23 1 1.5722 -8.4879 0.8737 24 1 -0.8308 -8.7162 1.1029 25 1 0.2418 -9.2504 -1.0054 26 6 1.5384 -2.3625 0.8605 27 1 -0.3634 0.1189 1.0208 28 1 -0.3633 0.8246 -0.6133 29 1 -0.3634 -0.9434 -0.4074 30 1 -0.7721 1.8611 0.3755 31 1 2.9664 3.9179 -0.3897 32 1 1.4521 6.4818 0.5909 33 1 1.7259 6.2565 -1.1557 34 1 -0.2723 7.7210 -0.5890 35 1 -0.6580 6.3121 -1.6052 36 1 -0.9134 6.3052 1.4322 37 1 -2.2605 6.7016 0.3375 38 1 -2.1793 4.5070 -0.6852 39 1 -2.1379 4.2490 1.0785 40 1 3.2624 -1.1437 0.1964 41 1 2.6997 -2.1746 -1.9547 42 1 0.9182 -1.9669 -1.6644 43 1 2.8997 -3.7983 -0.1301 44 1 0.0688 -4.0848 -1.0110 45 1 -1.7328 -6.8847 -1.2152 46 1 0.4635 -2.2313 0.9852 47 1 2.0551 -2.5495 1.8019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999934608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:58 Heat of formation + Delta-G solvation = 38.125604 kcal Electronic energy + Delta-G solvation = -26242.419741 eV Core-core repulsion = 22619.446023 eV Total energy + Delta-G solvation = -3622.973719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.55042 -41.01747 -39.16226 -36.69943 -36.17496 -34.90591 -33.57599 -31.96272 -30.42842 -28.79781 -27.75044 -26.69971 -26.37904 -25.44982 -24.34340 -22.46762 -22.39841 -20.47216 -20.30652 -19.13082 -19.03729 -18.01273 -17.67247 -17.02875 -16.67802 -16.34256 -16.16557 -15.96466 -15.26246 -15.09031 -14.95625 -14.77157 -14.69434 -14.47912 -14.18447 -14.00065 -13.77061 -13.47617 -13.30643 -13.19209 -13.11975 -12.80486 -12.44341 -12.27265 -12.18034 -12.10163 -11.96561 -11.92895 -11.74965 -11.71562 -11.61083 -11.38713 -10.88908 -10.80086 -9.63093 -9.47095 -9.05208 -8.96854 -7.93689 -5.21978 0.77631 1.46785 1.49164 1.49297 1.59619 1.83405 2.21914 2.53980 2.58236 3.37911 3.61863 3.66657 3.76696 3.83093 3.84209 3.87130 3.95604 4.10328 4.14646 4.26678 4.28875 4.35526 4.40503 4.47306 4.53202 4.59031 4.66230 4.77020 4.81119 4.87702 4.89061 4.91448 4.93042 4.98444 5.07272 5.09494 5.13225 5.16801 5.24338 5.34201 5.46081 5.54887 5.71425 5.82990 6.12839 6.28441 6.35894 6.56183 7.28721 7.34950 8.09402 8.34367 9.29668 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028379 B = 0.002342 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.398786 B =11953.987073 C =12671.855637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.593 5.593 3 C 0.581 3.419 4 O -0.602 6.602 5 C -0.260 4.260 6 C -0.195 4.195 7 C 0.017 3.983 8 N -0.438 5.438 9 C 0.072 3.928 10 C 0.091 3.909 11 C -0.130 4.130 12 C -0.124 4.124 13 C -0.054 4.054 14 C 0.130 3.870 15 C -0.149 4.149 16 C 0.155 3.845 17 N -0.722 5.722 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.294 1.294 26 C -0.160 4.160 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.171 0.829 31 H 0.178 0.822 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.080 0.920 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 31.779 1.999 31.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.323 5.323 3 C 0.374 3.626 4 O -0.486 6.486 5 C -0.270 4.270 6 C -0.217 4.217 7 C -0.091 4.091 8 N -0.113 5.113 9 C -0.065 4.065 10 C -0.028 4.028 11 C -0.168 4.168 12 C -0.161 4.161 13 C -0.091 4.091 14 C 0.026 3.974 15 C -0.189 4.189 16 C 0.044 3.956 17 N -0.360 5.360 18 C -0.374 4.374 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.220 1.220 25 H -0.221 1.221 26 C -0.201 4.201 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.086 0.914 30 H 0.188 0.812 31 H 0.195 0.805 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.208 0.792 45 H 0.060 0.940 46 H 0.099 0.901 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.851 31.975 2.042 32.051 hybrid contribution -0.020 -1.433 0.014 1.434 sum -0.870 30.541 2.056 30.623 Atomic orbital electron populations 1.22534 0.78378 1.04077 1.02676 1.47613 1.07773 1.04832 1.72038 1.17928 0.86060 0.83875 0.74701 1.90684 1.15285 1.88239 1.54411 1.20264 0.95152 0.91880 1.19696 1.22564 0.93917 0.95861 1.09406 1.20905 0.88964 0.91847 1.07408 1.44239 1.06024 1.07928 1.53138 1.21742 0.94342 0.87686 1.02732 1.22452 1.00910 0.75242 1.04208 1.21875 0.92321 1.02528 1.00037 1.21659 1.00697 0.94672 0.99093 1.20521 0.89873 0.94820 1.03928 1.22291 0.96949 0.81055 0.97125 1.23751 1.01978 0.95852 0.97290 1.21605 0.92486 0.87293 0.94174 1.42493 1.20187 1.05941 1.67354 1.19730 1.02294 0.86848 1.28555 0.90573 1.25549 0.96854 1.02209 1.02156 1.69815 1.09714 1.34620 1.47736 0.85089 0.77473 0.80230 0.77064 1.19167 1.22035 1.22131 1.24122 1.01005 0.96006 0.98985 0.91407 0.87866 0.91450 0.81203 0.80523 0.88724 0.87963 0.87202 0.91078 0.91649 0.88766 0.89143 0.88777 0.87694 0.91328 0.90141 0.90442 0.79243 0.94009 0.90127 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.66 7.46 127.77 0.95 2.62 16 2 N -0.59 -18.79 3.08 -823.35 -2.54 -21.33 16 3 C 0.58 19.75 7.67 86.62 0.66 20.41 16 4 O -0.60 -24.32 16.41 -4.10 -0.07 -24.39 16 5 C -0.26 -7.10 6.06 -19.02 -0.12 -7.22 16 6 C -0.19 -4.21 8.74 23.54 0.21 -4.01 16 7 C 0.02 0.30 6.53 40.91 0.27 0.57 16 8 N -0.44 -7.28 3.11 -507.85 -1.58 -8.86 16 9 C 0.07 1.63 11.20 83.93 0.94 2.57 16 10 C 0.09 0.75 6.89 86.32 0.59 1.34 16 11 C -0.13 -0.63 5.91 30.69 0.18 -0.45 16 12 C -0.12 -0.73 5.97 30.78 0.18 -0.54 16 13 C -0.05 -0.53 6.26 30.11 0.19 -0.34 16 14 C 0.13 4.46 4.21 45.58 0.19 4.65 16 15 C -0.15 -5.32 7.34 31.12 0.23 -5.09 16 16 C 0.15 6.35 4.47 45.51 0.20 6.55 16 17 N -0.72 -36.74 5.41 -320.44 -1.73 -38.47 16 18 C -0.24 -13.56 9.97 84.03 0.84 -12.73 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 21 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 22 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 C -0.16 -5.78 7.29 31.18 0.23 -5.56 16 27 H 0.07 1.56 7.63 -2.38 -0.02 1.54 16 28 H 0.10 2.29 4.85 -2.39 -0.01 2.28 16 29 H 0.07 1.86 6.10 -2.39 -0.01 1.84 16 30 H 0.17 3.19 4.84 -2.91 -0.01 3.18 16 31 H 0.18 3.62 8.06 -2.92 -0.02 3.59 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.07 0.44 8.11 -2.39 -0.02 0.43 16 36 H 0.06 0.45 8.12 -2.39 -0.02 0.43 16 37 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.11 3.80 7.23 -2.39 -0.02 3.78 16 41 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.08 2.90 6.99 -2.39 -0.02 2.88 16 43 H 0.08 3.17 8.11 -2.39 -0.02 3.15 16 44 H 0.38 20.27 7.91 -92.71 -0.73 19.54 16 45 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 46 H 0.08 2.98 6.58 -2.39 -0.02 2.96 16 47 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -74.11 369.20 2.86 -71.25 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.25 Total: 33.29 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 6.22 Total: -1.12 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -5.57 Total: -127.54 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.07 Total: -24.39 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -74.11 2.86 -71.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999934608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.379 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds