Wall clock time and date at job start Tue Mar 31 2020 11:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35535 * 125.67881 * 2 1 4 4 C 1.35457 * 108.87200 * 180.02562 * 3 2 1 5 5 C 1.39838 * 107.86527 * 0.26430 * 4 3 2 6 6 C 1.37650 * 125.67976 * 180.02562 * 2 1 3 7 7 C 1.46681 * 126.22907 * 0.02562 * 6 2 1 8 8 O 1.21692 * 120.00493 * 5.02508 * 7 6 2 9 9 N 1.34779 * 119.99577 * 185.03025 * 7 6 2 10 10 C 1.46505 * 119.99801 * 185.17896 * 9 7 6 11 11 C 1.52994 * 115.55061 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.46551 * 85.60911 * 11 10 9 13 13 C 1.53183 * 109.31639 * 178.60220 * 12 11 10 14 14 N 1.46921 * 108.76942 * 54.65555 * 13 12 11 15 15 C 1.36938 * 120.63258 * 126.36035 * 14 13 12 16 16 H 1.07995 * 120.00101 * 211.63241 * 15 14 13 17 17 C 1.38813 * 120.00108 * 31.62584 * 15 14 13 18 18 N 1.31622 * 119.99525 * 10.41363 * 17 15 14 19 19 Si 1.86798 * 120.00237 * 190.41024 * 17 15 14 20 20 H 1.48499 * 109.47228 * 90.00322 * 19 17 15 21 21 H 1.48505 * 109.46955 * 210.00303 * 19 17 15 22 22 H 1.48497 * 109.46963 * 330.00342 * 19 17 15 23 23 C 1.46927 * 118.73654 * 306.38715 * 14 13 12 24 24 C 1.53043 * 109.46193 * 325.55233 * 11 10 9 25 25 C 1.52996 * 117.49937 * 34.33067 * 10 9 7 26 26 C 1.53000 * 117.49766 * 325.67327 * 10 9 7 27 27 H 1.09002 * 109.47319 * 86.09051 * 1 2 3 28 28 H 1.08998 * 109.47237 * 206.09151 * 1 2 3 29 29 H 1.09001 * 109.47326 * 326.09857 * 1 2 3 30 30 H 1.07994 * 125.56555 * 359.97438 * 3 2 1 31 31 H 1.08003 * 126.06634 * 180.02562 * 4 3 2 32 32 H 1.07998 * 126.45811 * 179.73638 * 5 4 3 33 33 H 0.97002 * 120.00508 * 5.18260 * 9 7 6 34 34 H 1.08999 * 109.46423 * 205.58787 * 11 10 9 35 35 H 1.09003 * 109.49567 * 298.57282 * 12 11 10 36 36 H 1.09007 * 109.49371 * 58.65766 * 12 11 10 37 37 H 1.09009 * 109.59946 * 294.86387 * 13 12 11 38 38 H 1.09000 * 109.58597 * 174.44083 * 13 12 11 39 39 H 0.97000 * 119.99545 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.58648 * 293.81553 * 23 14 13 41 41 H 1.08999 * 109.58340 * 173.39380 * 23 14 13 42 42 H 1.09000 * 109.50079 * 301.34202 * 24 11 10 43 43 H 1.09008 * 109.49602 * 61.40378 * 24 11 10 44 44 H 1.09001 * 117.49873 * 0.02562 * 25 10 9 45 45 H 1.08995 * 117.50264 * 145.02041 * 25 10 9 46 46 H 1.09005 * 117.49480 * 214.98185 * 26 10 9 47 47 H 1.08994 * 117.49803 * 359.96941 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7093 -0.0006 5 6 3.5780 -0.6889 -0.0071 6 6 2.2678 -1.1181 -0.0005 7 6 1.8123 -2.5124 -0.0017 8 8 0.6255 -2.7648 -0.0946 9 7 2.7083 -3.5141 0.1003 10 6 2.2669 -4.9063 -0.0147 11 6 3.3676 -5.9606 0.1172 12 6 3.5925 -6.2807 1.5968 13 6 4.6705 -7.3617 1.7232 14 7 5.8759 -6.9126 1.0134 15 6 7.0892 -6.8839 1.6477 16 1 7.8226 -6.1389 1.3769 17 6 7.3763 -7.8124 2.6389 18 7 6.5765 -8.8403 2.8292 19 14 8.8976 -7.6031 3.7024 20 1 8.5558 -6.7979 4.9024 21 1 9.3927 -8.9375 4.1262 22 1 9.9538 -6.9075 2.9240 23 6 5.7547 -6.4941 -0.3898 24 6 4.6643 -5.4231 -0.4926 25 6 1.1139 -5.2047 -0.9750 26 6 0.8836 -5.2566 0.5373 27 1 -0.3634 0.0701 -1.0253 28 1 -0.3633 -0.9229 0.4520 29 1 -0.3634 0.8530 0.5732 30 1 1.9082 2.1235 -0.0004 31 1 4.4132 1.3612 -0.0003 32 1 4.4583 -1.3144 -0.0132 33 1 3.6455 -3.3132 0.2499 34 1 3.0675 -6.8668 -0.4088 35 1 3.9169 -5.3803 2.1186 36 1 2.6625 -6.6413 2.0364 37 1 4.3105 -8.2906 1.2806 38 1 4.9047 -7.5228 2.7755 39 1 6.7774 -9.4893 3.5216 40 1 5.4832 -7.3521 -1.0048 41 1 6.7044 -6.0828 -0.7317 42 1 4.4974 -5.1732 -1.5404 43 1 4.9783 -4.5305 0.0487 44 1 0.6840 -4.3653 -1.5216 45 1 1.1393 -6.1523 -1.5130 46 1 0.7578 -6.2385 0.9938 47 1 0.3023 -4.4515 0.9865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000084089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:35 Heat of formation + Delta-G solvation = 64.946104 kcal Electronic energy + Delta-G solvation = -27287.227653 eV Core-core repulsion = 23665.416958 eV Total energy + Delta-G solvation = -3621.810695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53927 -40.03935 -37.81341 -35.90278 -33.60176 -32.77701 -32.52925 -30.31066 -29.75208 -29.17036 -26.65795 -25.56709 -23.49271 -22.63353 -22.43438 -21.55033 -20.84377 -19.77594 -19.65763 -18.78928 -18.08428 -16.79624 -16.11037 -15.74704 -15.47603 -14.85273 -14.57362 -14.35285 -14.04108 -13.71498 -13.54461 -13.47894 -13.39597 -13.33983 -12.91528 -12.76174 -12.53393 -12.46948 -12.27561 -12.14857 -11.46312 -11.29254 -11.02977 -10.95443 -10.74897 -10.68582 -10.35727 -10.21962 -10.05169 -9.93417 -9.71924 -9.52189 -9.33344 -8.90040 -8.57363 -8.45414 -8.25814 -6.59782 -5.76873 -3.25207 1.35883 2.49052 2.59397 3.28425 3.30467 3.38042 3.44707 3.45732 4.16224 4.49706 4.59049 4.63204 4.80437 4.86591 5.00856 5.12448 5.24779 5.24854 5.26427 5.38963 5.42254 5.45362 5.62005 5.73590 5.79008 5.91748 5.92956 5.99435 6.03603 6.13998 6.20478 6.33765 6.47730 6.51837 6.56997 6.60680 6.68867 6.76478 6.78438 6.82525 6.86252 6.97126 7.03319 7.41757 7.57346 7.71726 7.80458 8.20293 8.49796 9.24343 9.85799 10.44126 11.31000 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.003404 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.514061 B = 8224.174909 C = 9288.358027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.412 5.412 3 C 0.009 3.991 4 C -0.207 4.207 5 C -0.140 4.140 6 C -0.051 4.051 7 C 0.588 3.412 8 O -0.550 6.550 9 N -0.675 5.675 10 C 0.111 3.889 11 C -0.042 4.042 12 C -0.133 4.133 13 C 0.172 3.828 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.905 5.905 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.146 3.854 24 C -0.127 4.127 25 C -0.179 4.179 26 C -0.175 4.175 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.167 0.833 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.409 0.591 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.017 0.983 38 H 0.088 0.912 39 H 0.254 0.746 40 H 0.018 0.982 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.363 16.447 -6.604 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.085 5.085 3 C -0.126 4.126 4 C -0.231 4.231 5 C -0.166 4.166 6 C -0.165 4.165 7 C 0.376 3.624 8 O -0.431 6.431 9 N -0.325 5.325 10 C 0.024 3.976 11 C -0.061 4.061 12 C -0.172 4.172 13 C 0.046 3.954 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.081 0.919 17 C -0.195 4.195 18 N -0.549 5.549 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.019 3.981 24 C -0.166 4.166 25 C -0.218 4.218 26 C -0.213 4.213 27 H 0.093 0.907 28 H 0.123 0.877 29 H 0.098 0.902 30 H 0.185 0.815 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.247 0.753 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.537 16.087 -6.559 21.424 hybrid contribution 1.163 0.329 0.635 1.365 sum -11.374 16.415 -5.924 20.831 Atomic orbital electron populations 1.22270 0.76229 1.05427 1.03604 1.43830 1.06746 1.04961 1.52931 1.22006 0.90768 0.91456 1.08347 1.20841 0.96008 0.95051 1.11156 1.21435 0.94594 0.95618 1.04995 1.20109 0.90485 0.87656 1.18213 1.16980 0.85611 0.83397 0.76407 1.90710 1.16259 1.84586 1.51571 1.45074 1.11418 1.04232 1.71743 1.20958 0.90265 0.81424 1.04980 1.20790 0.92008 0.94705 0.98571 1.22264 0.99898 1.01519 0.93540 1.20795 0.83922 0.91230 0.99470 1.44021 1.04710 1.76905 1.05891 1.19179 0.92862 1.09558 1.16632 0.91854 1.25170 0.97967 0.95049 1.01264 1.69975 1.38392 1.12413 1.34132 0.86271 0.82852 0.76880 0.80621 1.21442 1.21729 1.20421 1.20892 0.95652 0.93950 0.87585 1.22042 0.95915 0.99906 0.98783 1.23390 1.02095 1.02763 0.93528 1.23419 0.98619 1.02916 0.96388 0.90729 0.87670 0.90218 0.81545 0.83967 0.83738 0.75316 0.90242 0.92782 0.93100 0.96490 0.89366 0.93634 0.96421 0.92748 0.92835 0.92692 0.88213 0.88934 0.88903 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.64 59.84 0.64 1.21 16 2 N -0.41 -4.57 3.16 -120.24 -0.38 -4.95 16 3 C 0.01 0.09 11.38 -16.91 -0.19 -0.10 16 4 C -0.21 -2.11 10.81 -39.98 -0.43 -2.54 16 5 C -0.14 -1.64 10.35 -39.12 -0.40 -2.05 16 6 C -0.05 -0.66 6.89 -81.98 -0.56 -1.23 16 7 C 0.59 8.44 7.46 -12.85 -0.10 8.34 16 8 O -0.55 -8.63 10.16 5.20 0.05 -8.58 16 9 N -0.68 -9.43 5.36 -48.90 -0.26 -9.70 16 10 C 0.11 1.63 2.48 -131.82 -0.33 1.30 16 11 C -0.04 -0.67 2.28 -90.58 -0.21 -0.88 16 12 C -0.13 -2.47 5.22 -26.61 -0.14 -2.61 16 13 C 0.17 4.00 5.25 -3.72 -0.02 3.98 16 14 N -0.59 -14.44 2.98 -172.33 -0.51 -14.96 16 15 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 16 H 0.06 1.68 7.85 -52.49 -0.41 1.26 16 17 C 0.00 0.11 5.05 -17.43 -0.09 0.02 16 18 N -0.90 -25.99 11.05 55.49 0.61 -25.38 16 19 Si 0.90 21.51 29.57 -169.99 -5.03 16.48 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 24 C -0.13 -2.07 4.83 -26.61 -0.13 -2.20 16 25 C -0.18 -2.54 9.37 -26.70 -0.25 -2.79 16 26 C -0.18 -2.57 8.91 -26.70 -0.24 -2.80 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.10 1.11 6.21 -51.93 -0.32 0.79 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.14 1.51 7.49 -52.49 -0.39 1.11 16 33 H 0.41 5.38 5.61 -40.82 -0.23 5.15 16 34 H 0.08 1.31 7.90 -51.93 -0.41 0.90 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.88 7.25 -51.93 -0.38 0.51 16 37 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.09 2.33 6.11 -51.93 -0.32 2.02 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.88 6.50 -51.92 -0.34 0.54 16 44 H 0.10 1.51 6.55 -51.93 -0.34 1.17 16 45 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 46 H 0.09 1.30 7.60 -51.93 -0.39 0.90 16 47 H 0.11 1.71 6.19 -51.93 -0.32 1.39 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -30.90 365.14 -9.83 -40.73 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.20 Total: 7.21 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.62 Total: -6.37 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.54 Total: -54.98 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.05 Total: -8.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.90 -9.83 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000084089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.681 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds