Wall clock time and date at job start Tue Mar 31 2020 11:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35535 * 125.67881 * 2 1 4 4 C 1.35457 * 108.87200 * 180.02562 * 3 2 1 5 5 C 1.39838 * 107.86527 * 0.26430 * 4 3 2 6 6 C 1.37650 * 125.67976 * 180.02562 * 2 1 3 7 7 C 1.46681 * 126.22907 * 0.02562 * 6 2 1 8 8 O 1.21692 * 120.00493 * 5.02508 * 7 6 2 9 9 N 1.34779 * 119.99577 * 185.03025 * 7 6 2 10 10 C 1.46505 * 119.99801 * 185.17896 * 9 7 6 11 11 C 1.52994 * 115.55061 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.46551 * 85.60911 * 11 10 9 13 13 C 1.53183 * 109.31639 * 178.60220 * 12 11 10 14 14 N 1.46921 * 108.76942 * 54.65555 * 13 12 11 15 15 C 1.36938 * 120.63258 * 126.36035 * 14 13 12 16 16 H 1.07995 * 120.00101 * 211.63241 * 15 14 13 17 17 C 1.38813 * 120.00108 * 31.62584 * 15 14 13 18 18 N 1.31622 * 119.99525 * 10.41363 * 17 15 14 19 19 Si 1.86798 * 120.00237 * 190.41024 * 17 15 14 20 20 H 1.48499 * 109.47228 * 90.00322 * 19 17 15 21 21 H 1.48505 * 109.46955 * 210.00303 * 19 17 15 22 22 H 1.48497 * 109.46963 * 330.00342 * 19 17 15 23 23 C 1.46927 * 118.73654 * 306.38715 * 14 13 12 24 24 C 1.53043 * 109.46193 * 325.55233 * 11 10 9 25 25 C 1.52996 * 117.49937 * 34.33067 * 10 9 7 26 26 C 1.53000 * 117.49766 * 325.67327 * 10 9 7 27 27 H 1.09002 * 109.47319 * 86.09051 * 1 2 3 28 28 H 1.08998 * 109.47237 * 206.09151 * 1 2 3 29 29 H 1.09001 * 109.47326 * 326.09857 * 1 2 3 30 30 H 1.07994 * 125.56555 * 359.97438 * 3 2 1 31 31 H 1.08003 * 126.06634 * 180.02562 * 4 3 2 32 32 H 1.07998 * 126.45811 * 179.73638 * 5 4 3 33 33 H 0.97002 * 120.00508 * 5.18260 * 9 7 6 34 34 H 1.08999 * 109.46423 * 205.58787 * 11 10 9 35 35 H 1.09003 * 109.49567 * 298.57282 * 12 11 10 36 36 H 1.09007 * 109.49371 * 58.65766 * 12 11 10 37 37 H 1.09009 * 109.59946 * 294.86387 * 13 12 11 38 38 H 1.09000 * 109.58597 * 174.44083 * 13 12 11 39 39 H 0.97000 * 119.99545 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.58648 * 293.81553 * 23 14 13 41 41 H 1.08999 * 109.58340 * 173.39380 * 23 14 13 42 42 H 1.09000 * 109.50079 * 301.34202 * 24 11 10 43 43 H 1.09008 * 109.49602 * 61.40378 * 24 11 10 44 44 H 1.09001 * 117.49873 * 0.02562 * 25 10 9 45 45 H 1.08995 * 117.50264 * 145.02041 * 25 10 9 46 46 H 1.09005 * 117.49480 * 214.98185 * 26 10 9 47 47 H 1.08994 * 117.49803 * 359.96941 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7093 -0.0006 5 6 3.5780 -0.6889 -0.0071 6 6 2.2678 -1.1181 -0.0005 7 6 1.8123 -2.5124 -0.0017 8 8 0.6255 -2.7648 -0.0946 9 7 2.7083 -3.5141 0.1003 10 6 2.2669 -4.9063 -0.0147 11 6 3.3676 -5.9606 0.1172 12 6 3.5925 -6.2807 1.5968 13 6 4.6705 -7.3617 1.7232 14 7 5.8759 -6.9126 1.0134 15 6 7.0892 -6.8839 1.6477 16 1 7.8226 -6.1389 1.3769 17 6 7.3763 -7.8124 2.6389 18 7 6.5765 -8.8403 2.8292 19 14 8.8976 -7.6031 3.7024 20 1 8.5558 -6.7979 4.9024 21 1 9.3927 -8.9375 4.1262 22 1 9.9538 -6.9075 2.9240 23 6 5.7547 -6.4941 -0.3898 24 6 4.6643 -5.4231 -0.4926 25 6 1.1139 -5.2047 -0.9750 26 6 0.8836 -5.2566 0.5373 27 1 -0.3634 0.0701 -1.0253 28 1 -0.3633 -0.9229 0.4520 29 1 -0.3634 0.8530 0.5732 30 1 1.9082 2.1235 -0.0004 31 1 4.4132 1.3612 -0.0003 32 1 4.4583 -1.3144 -0.0132 33 1 3.6455 -3.3132 0.2499 34 1 3.0675 -6.8668 -0.4088 35 1 3.9169 -5.3803 2.1186 36 1 2.6625 -6.6413 2.0364 37 1 4.3105 -8.2906 1.2806 38 1 4.9047 -7.5228 2.7755 39 1 6.7774 -9.4893 3.5216 40 1 5.4832 -7.3521 -1.0048 41 1 6.7044 -6.0828 -0.7317 42 1 4.4974 -5.1732 -1.5404 43 1 4.9783 -4.5305 0.0487 44 1 0.6840 -4.3653 -1.5216 45 1 1.1393 -6.1523 -1.5130 46 1 0.7578 -6.2385 0.9938 47 1 0.3023 -4.4515 0.9865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000084089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:34 Heat of formation + Delta-G solvation = 47.971021 kcal Electronic energy + Delta-G solvation = -27287.963748 eV Core-core repulsion = 23665.416958 eV Total energy + Delta-G solvation = -3622.546789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39480 -41.14512 -39.21316 -37.34526 -34.61199 -34.52043 -33.42237 -32.06377 -31.42344 -30.05138 -27.38468 -27.36544 -24.78286 -24.06090 -23.84346 -22.89467 -21.77227 -21.13497 -20.65692 -20.13248 -19.02426 -18.63525 -17.13222 -16.84752 -16.61697 -16.54376 -15.71508 -15.46247 -15.33101 -15.20113 -15.01598 -14.81550 -14.52998 -14.35765 -14.31914 -14.11491 -13.86645 -13.25898 -13.19585 -13.10120 -12.89706 -12.87915 -12.68269 -12.58813 -12.30151 -12.15524 -11.92659 -11.89385 -11.72721 -11.54126 -11.12157 -10.96145 -10.70532 -10.51879 -9.68368 -9.64976 -9.14496 -8.58435 -7.83272 -5.34336 0.45780 1.48674 1.49469 1.58219 1.65114 1.81597 2.30536 2.35839 2.53015 2.98977 3.31638 3.57035 3.60849 3.75710 3.93494 3.98947 4.02760 4.18529 4.21393 4.36394 4.38395 4.47481 4.48856 4.55692 4.58871 4.66476 4.74443 4.77307 4.81752 4.95772 5.04797 5.06814 5.16842 5.19169 5.26580 5.27561 5.27801 5.34849 5.40103 5.53060 5.61965 5.69146 5.80742 5.83162 6.00483 6.32996 6.45337 6.51689 7.14851 7.20000 7.90248 8.42756 9.22189 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.003404 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.514061 B = 8224.174909 C = 9288.358027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.419 5.419 3 C 0.024 3.976 4 C -0.222 4.222 5 C -0.144 4.144 6 C -0.088 4.088 7 C 0.585 3.415 8 O -0.570 6.570 9 N -0.675 5.675 10 C 0.111 3.889 11 C -0.032 4.032 12 C -0.117 4.117 13 C 0.179 3.821 14 N -0.610 5.610 15 C -0.260 4.260 16 H 0.067 0.933 17 C -0.050 4.050 18 N -0.937 5.937 19 Si 0.967 3.033 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.267 1.267 23 C 0.141 3.859 24 C -0.114 4.114 25 C -0.167 4.167 26 C -0.177 4.177 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.205 0.795 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.412 0.588 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.062 0.938 37 H -0.004 1.004 38 H 0.051 0.949 39 H 0.249 0.751 40 H 0.014 0.986 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.519 18.989 -7.462 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.092 5.092 3 C -0.112 4.112 4 C -0.245 4.245 5 C -0.171 4.171 6 C -0.201 4.201 7 C 0.375 3.625 8 O -0.452 6.452 9 N -0.324 5.324 10 C 0.024 3.976 11 C -0.051 4.051 12 C -0.156 4.156 13 C 0.054 3.946 14 N -0.334 5.334 15 C -0.391 4.391 16 H 0.085 0.915 17 C -0.245 4.245 18 N -0.583 5.583 19 Si 0.795 3.205 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.192 1.192 23 C 0.016 3.984 24 C -0.153 4.153 25 C -0.205 4.205 26 C -0.215 4.215 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.222 0.778 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.251 0.749 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.014 0.986 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.126 0.874 46 H 0.117 0.883 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.695 18.651 -7.443 23.757 hybrid contribution 1.198 -0.398 0.864 1.530 sum -11.497 18.252 -6.579 22.552 Atomic orbital electron populations 1.22360 0.75214 1.05611 1.04410 1.44090 1.07571 1.04891 1.52629 1.22683 0.90403 0.92515 1.05593 1.21191 0.97291 0.94598 1.11461 1.21692 0.94402 0.96748 1.04272 1.20040 0.91424 0.87488 1.21109 1.17222 0.85329 0.84100 0.75875 1.90695 1.16971 1.85007 1.52559 1.45021 1.11601 1.03871 1.71949 1.20733 0.89666 0.81513 1.05700 1.20625 0.92605 0.95389 0.96471 1.22019 0.98549 0.99358 0.95686 1.20560 0.85045 0.92047 0.96984 1.44276 1.04284 1.77098 1.07725 1.19526 0.93736 1.09189 1.16630 0.91538 1.25907 1.00805 0.95025 1.02812 1.70143 1.40096 1.13297 1.34754 0.85276 0.79899 0.76391 0.78938 1.21303 1.22317 1.19160 1.21050 0.97302 0.94856 0.85180 1.21889 0.94346 0.98499 1.00571 1.23367 1.00945 1.03081 0.93121 1.23380 0.98360 1.02796 0.96977 0.90017 0.89963 0.87111 0.77795 0.81999 0.83214 0.74942 0.90039 0.93474 0.91915 0.98597 0.93038 0.94234 0.96755 0.92521 0.90157 0.92193 0.89072 0.87426 0.88275 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.01 10.64 127.77 1.36 2.37 16 2 N -0.42 -8.48 3.16 -534.32 -1.69 -10.17 16 3 C 0.02 0.37 11.38 83.48 0.95 1.32 16 4 C -0.22 -3.96 10.81 22.01 0.24 -3.72 16 5 C -0.14 -3.17 10.35 22.57 0.23 -2.93 16 6 C -0.09 -2.18 6.89 40.35 0.28 -1.90 16 7 C 0.58 16.45 7.46 86.45 0.64 17.09 16 8 O -0.57 -17.76 10.16 -4.32 -0.04 -17.81 16 9 N -0.67 -18.16 5.36 -426.84 -2.29 -20.44 16 10 C 0.11 3.12 2.48 3.60 0.01 3.13 16 11 C -0.03 -0.98 2.28 -10.77 -0.02 -1.01 16 12 C -0.12 -4.33 5.22 30.67 0.16 -4.17 16 13 C 0.18 8.57 5.25 86.36 0.45 9.03 16 14 N -0.61 -30.01 2.98 -699.13 -2.09 -32.10 16 15 C -0.26 -14.13 9.58 84.03 0.80 -13.33 16 16 H 0.07 3.50 7.85 -2.91 -0.02 3.47 16 17 C -0.05 -2.79 5.05 84.86 0.43 -2.37 16 18 N -0.94 -55.40 11.05 21.65 0.24 -55.16 16 19 Si 0.97 44.71 29.57 68.60 2.03 46.74 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 C 0.14 5.60 6.52 86.36 0.56 6.16 16 24 C -0.11 -3.52 4.83 30.67 0.15 -3.37 16 25 C -0.17 -4.46 9.37 30.62 0.29 -4.17 16 26 C -0.18 -5.01 8.91 30.62 0.27 -4.74 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.71 6.21 -2.39 -0.01 1.69 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.21 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.15 2.94 7.49 -2.91 -0.02 2.92 16 33 H 0.41 10.35 5.61 -92.71 -0.52 9.83 16 34 H 0.08 2.54 7.90 -2.39 -0.02 2.52 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 2.16 7.25 -2.38 -0.02 2.14 16 37 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 38 H 0.05 2.83 6.11 -2.39 -0.01 2.82 16 39 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 42 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 1.81 6.50 -2.38 -0.02 1.80 16 44 H 0.09 2.65 6.55 -2.39 -0.02 2.64 16 45 H 0.11 2.55 8.05 -2.39 -0.02 2.53 16 46 H 0.10 2.66 7.60 -2.38 -0.02 2.64 16 47 H 0.10 3.01 6.19 -2.39 -0.01 2.99 16 Total: -1.00 -67.94 365.14 3.42 -64.52 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.45 Total: 27.02 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 6.81 Total: -2.60 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -5.83 Total: -117.87 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.04 Total: -17.81 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.94 3.42 -64.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000084089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.491 kcal (2) G-P(sol) polarization free energy of solvation -67.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds