Wall clock time and date at job start Tue Mar 31 2020 11:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99879 * 2 1 4 4 C 1.39044 * 120.00203 * 179.97438 * 2 1 3 5 5 C 1.39216 * 119.92851 * 0.02562 * 4 2 1 6 6 C 1.37612 * 120.06863 * 179.97438 * 5 4 2 7 7 C 1.39803 * 119.92959 * 0.02562 * 6 5 4 8 8 C 1.47516 * 120.06571 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00424 * 41.69409 * 8 7 6 10 10 N 1.34781 * 119.99375 * 221.68873 * 8 7 6 11 11 C 1.46916 * 120.63442 * 5.86056 * 10 8 7 12 12 C 1.53197 * 108.78032 * 126.36532 * 11 10 8 13 13 C 1.53040 * 109.31243 * 54.62934 * 12 11 10 14 14 C 1.53037 * 109.53956 * 298.64215 * 13 12 11 15 15 H 1.08994 * 109.49376 * 301.37554 * 14 13 12 16 16 N 1.46506 * 109.49466 * 181.31583 * 14 13 12 17 17 C 1.36938 * 119.99533 * 154.99728 * 16 14 13 18 18 H 1.07997 * 120.00305 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99401 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00360 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99556 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47384 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47052 * 120.00330 * 21 19 17 24 24 H 1.48498 * 109.47104 * 240.00186 * 21 19 17 25 25 C 1.46928 * 120.62514 * 185.57312 * 10 8 7 26 26 C 1.39789 * 119.85881 * 359.97438 * 7 6 5 27 27 C 1.37606 * 119.93766 * 0.02562 * 26 7 6 28 28 H 1.08994 * 109.47329 * 269.99838 * 1 2 3 29 29 H 1.09003 * 109.47034 * 30.00278 * 1 2 3 30 30 H 1.09001 * 109.46691 * 149.99882 * 1 2 3 31 31 H 1.09002 * 109.46992 * 270.00319 * 3 2 1 32 32 H 1.09002 * 109.46682 * 29.99962 * 3 2 1 33 33 H 1.08995 * 109.46937 * 150.00042 * 3 2 1 34 34 H 1.08000 * 119.96783 * 0.27646 * 5 4 2 35 35 H 1.07998 * 120.04071 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.58853 * 246.14982 * 11 10 8 37 37 H 1.09005 * 109.58974 * 6.43276 * 11 10 8 38 38 H 1.09002 * 109.49768 * 174.58739 * 12 11 10 39 39 H 1.08996 * 109.49423 * 294.65150 * 12 11 10 40 40 H 1.09004 * 109.45246 * 58.66156 * 13 12 11 41 41 H 1.08993 * 109.45800 * 178.61220 * 13 12 11 42 42 H 0.96994 * 120.00256 * 334.99827 * 16 14 13 43 43 H 0.96999 * 120.00086 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.59075 * 353.42122 * 25 10 8 45 45 H 1.08996 * 109.58531 * 113.85109 * 25 10 8 46 46 H 1.08003 * 120.03229 * 179.97438 * 26 7 6 47 47 H 1.08000 * 119.96905 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2041 0.0005 5 6 1.4627 -2.4089 0.0005 6 6 2.1479 -3.6023 0.0005 7 6 3.5459 -3.6040 0.0011 8 6 4.2835 -4.8815 0.0017 9 8 3.9068 -5.8014 -0.6987 10 7 5.3750 -5.0291 0.7785 11 6 5.7687 -3.9759 1.7241 12 6 5.9174 -4.5947 3.1176 13 6 6.8920 -5.7725 3.0470 14 6 6.3371 -6.8400 2.1011 15 1 5.3621 -7.1712 2.4583 16 7 7.2556 -7.9806 2.0586 17 6 6.7877 -9.2243 1.7276 18 1 5.7417 -9.3644 1.4983 19 6 7.6581 -10.3050 1.6867 20 7 8.9327 -10.1343 1.9666 21 14 7.0200 -12.0013 1.2345 22 1 5.5615 -11.9263 0.9660 23 1 7.7223 -12.4866 0.0194 24 1 7.2693 -12.9397 2.3582 25 6 6.1901 -6.2490 0.7001 26 6 4.2433 -2.3925 0.0011 27 6 3.5525 -1.2024 0.0011 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3791 1.5835 -1.0277 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 0.3827 -2.4070 -0.0044 35 1 1.6063 -4.5367 0.0001 36 1 6.7195 -3.5426 1.4134 37 1 5.0035 -3.1999 1.7463 38 1 6.3019 -3.8452 3.8094 39 1 4.9459 -4.9461 3.4651 40 1 7.8560 -5.4243 2.6762 41 1 7.0185 -6.1992 4.0420 42 1 8.1949 -7.8549 2.2648 43 1 9.5408 -10.8895 1.9384 44 1 5.7016 -6.9737 0.0488 45 1 7.1759 -6.0049 0.3042 46 1 5.3234 -2.3905 0.0019 47 1 4.0908 -0.2661 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000778513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:51 Heat of formation + Delta-G solvation = 22.543326 kcal Electronic energy + Delta-G solvation = -26486.384188 eV Core-core repulsion = 22862.734771 eV Total energy + Delta-G solvation = -3623.649417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.44333 -39.20355 -37.23375 -36.21534 -34.40646 -32.30151 -31.43354 -31.14291 -30.37924 -28.59953 -28.07992 -26.03030 -24.58248 -23.91765 -22.50733 -21.84761 -21.60023 -20.14616 -19.06740 -17.62591 -17.04468 -16.97058 -16.17108 -15.65816 -15.46336 -15.04098 -14.86003 -14.50712 -14.20734 -13.98109 -13.84418 -13.74589 -13.45240 -13.24319 -13.06900 -12.81610 -12.62540 -12.53796 -12.39896 -12.34944 -12.19229 -12.12169 -11.25662 -11.01877 -10.98220 -10.80131 -10.61154 -10.50575 -10.12321 -10.05659 -9.75222 -9.69489 -9.43831 -9.09094 -9.01750 -8.24678 -7.55626 -6.94746 -5.74435 -3.03783 1.10973 1.29328 2.73681 3.01765 3.33648 3.47997 3.54178 3.57085 3.81367 4.52979 4.55224 4.62748 4.73374 4.75568 4.87031 4.90715 5.02604 5.13191 5.18318 5.22729 5.23435 5.30071 5.33364 5.40270 5.44979 5.54116 5.61447 5.73286 5.85763 5.86936 5.96422 6.00279 6.11309 6.14987 6.23897 6.28523 6.39405 6.43947 6.55814 6.57800 6.85280 6.85968 6.91145 7.09497 7.14705 7.77388 7.79543 8.43647 8.53969 9.55828 10.10259 10.45723 11.48018 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.002649 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.916709 B =10568.510806 C =11208.013032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.635 5.635 3 C 0.091 3.909 4 C 0.230 3.770 5 C -0.206 4.206 6 C -0.018 4.018 7 C -0.182 4.182 8 C 0.558 3.442 9 O -0.542 6.542 10 N -0.602 5.602 11 C 0.101 3.899 12 C -0.130 4.130 13 C -0.126 4.126 14 C 0.168 3.832 15 H 0.050 0.950 16 N -0.719 5.719 17 C -0.239 4.239 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.093 3.907 26 C -0.039 4.039 27 C -0.207 4.207 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.129 0.871 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 26.916 -0.860 30.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.345 5.345 3 C -0.052 4.052 4 C 0.127 3.873 5 C -0.228 4.228 6 C -0.037 4.037 7 C -0.187 4.187 8 C 0.347 3.653 9 O -0.420 6.420 10 N -0.335 5.335 11 C -0.022 4.022 12 C -0.169 4.169 13 C -0.164 4.164 14 C 0.057 3.943 15 H 0.068 0.932 16 N -0.360 5.360 17 C -0.370 4.370 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.031 4.031 26 C -0.058 4.058 27 C -0.229 4.229 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.147 0.853 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.109 26.421 -1.270 29.979 hybrid contribution 0.110 -0.813 -0.199 0.845 sum -13.998 25.607 -1.469 29.221 Atomic orbital electron populations 1.21679 0.79382 1.02833 1.01362 1.46242 1.05214 1.03345 1.79710 1.21676 0.97405 0.84805 1.01332 1.17965 0.91305 0.85679 0.92331 1.20591 0.99715 0.90690 1.11847 1.20927 0.92498 0.97836 0.92448 1.19716 0.94188 0.93144 1.11635 1.18295 0.80003 0.87151 0.79870 1.90781 1.66958 1.41852 1.42439 1.48163 1.27016 1.19678 1.38653 1.21996 1.00581 0.90396 0.89260 1.21887 1.00645 0.98298 0.96024 1.21822 0.98324 0.95461 1.00801 1.20405 0.94672 0.87700 0.91508 0.93181 1.42386 1.07815 1.03242 1.82515 1.19334 0.93939 0.85140 1.38601 0.90973 1.24744 0.95543 0.98123 1.02437 1.69670 1.02469 1.30342 1.55662 0.86117 0.78032 0.84509 0.77604 1.20415 1.21826 1.21895 1.22659 0.93762 0.84873 1.01817 1.21110 0.99745 0.90876 0.94077 1.20563 0.91896 0.98472 1.11994 0.93167 0.91506 0.91029 0.93226 0.91500 0.91014 0.85583 0.85261 0.91667 0.89407 0.91131 0.91634 0.92091 0.91500 0.78105 0.93574 0.89120 0.92115 0.85287 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.18 59.85 0.61 1.08 16 2 N -0.63 -4.67 3.39 -187.55 -0.64 -5.31 16 3 C 0.09 0.45 10.18 59.85 0.61 1.06 16 4 C 0.23 2.22 6.55 -83.86 -0.55 1.67 16 5 C -0.21 -2.12 9.18 -39.45 -0.36 -2.49 16 6 C -0.02 -0.22 9.64 -39.23 -0.38 -0.60 16 7 C -0.18 -2.51 5.08 -104.95 -0.53 -3.04 16 8 C 0.56 9.79 7.29 -12.48 -0.09 9.70 16 9 O -0.54 -11.79 16.36 5.29 0.09 -11.70 16 10 N -0.60 -9.90 2.98 -174.27 -0.52 -10.42 16 11 C 0.10 1.25 4.93 -3.71 -0.02 1.23 16 12 C -0.13 -1.66 6.08 -26.61 -0.16 -1.82 16 13 C -0.13 -2.04 5.36 -26.69 -0.14 -2.19 16 14 C 0.17 3.46 2.91 -68.03 -0.20 3.26 16 15 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 16 N -0.72 -18.27 5.12 -53.52 -0.27 -18.54 16 17 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 18 H 0.07 2.06 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 21 Si 0.91 23.09 29.55 -169.99 -5.02 18.06 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 C 0.09 1.85 6.00 -3.93 -0.02 1.82 16 26 C -0.04 -0.43 7.38 -39.23 -0.29 -0.72 16 27 C -0.21 -1.96 9.18 -39.45 -0.36 -2.32 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 30 H 0.07 0.37 6.17 -51.93 -0.32 0.05 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 33 H 0.07 0.33 6.17 -51.93 -0.32 0.01 16 34 H 0.13 1.04 6.11 -52.49 -0.32 0.72 16 35 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 37 H 0.09 0.95 4.81 -51.93 -0.25 0.70 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.39 10.23 7.80 -40.82 -0.32 9.91 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.09 2.10 6.99 -51.93 -0.36 1.74 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.13 1.27 6.73 -52.48 -0.35 0.92 16 47 H 0.13 0.91 6.11 -52.49 -0.32 0.59 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -34.39 371.56 -9.35 -43.74 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.17 Total: 7.06 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.14 Total: -0.77 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.70 Total: -61.99 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.39 -9.35 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000778513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.287 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds