Wall clock time and date at job start Tue Mar 31 2020 11:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99879 * 2 1 4 4 C 1.39044 * 120.00203 * 179.97438 * 2 1 3 5 5 C 1.39216 * 119.92851 * 0.02562 * 4 2 1 6 6 C 1.37612 * 120.06863 * 179.97438 * 5 4 2 7 7 C 1.39803 * 119.92959 * 0.02562 * 6 5 4 8 8 C 1.47516 * 120.06571 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00424 * 41.69409 * 8 7 6 10 10 N 1.34781 * 119.99375 * 221.68873 * 8 7 6 11 11 C 1.46916 * 120.63442 * 5.86056 * 10 8 7 12 12 C 1.53197 * 108.78032 * 126.36532 * 11 10 8 13 13 C 1.53040 * 109.31243 * 54.62934 * 12 11 10 14 14 C 1.53037 * 109.53956 * 298.64215 * 13 12 11 15 15 H 1.08994 * 109.49376 * 301.37554 * 14 13 12 16 16 N 1.46506 * 109.49466 * 181.31583 * 14 13 12 17 17 C 1.36938 * 119.99533 * 154.99728 * 16 14 13 18 18 H 1.07997 * 120.00305 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99401 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00360 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99556 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47384 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47052 * 120.00330 * 21 19 17 24 24 H 1.48498 * 109.47104 * 240.00186 * 21 19 17 25 25 C 1.46928 * 120.62514 * 185.57312 * 10 8 7 26 26 C 1.39789 * 119.85881 * 359.97438 * 7 6 5 27 27 C 1.37606 * 119.93766 * 0.02562 * 26 7 6 28 28 H 1.08994 * 109.47329 * 269.99838 * 1 2 3 29 29 H 1.09003 * 109.47034 * 30.00278 * 1 2 3 30 30 H 1.09001 * 109.46691 * 149.99882 * 1 2 3 31 31 H 1.09002 * 109.46992 * 270.00319 * 3 2 1 32 32 H 1.09002 * 109.46682 * 29.99962 * 3 2 1 33 33 H 1.08995 * 109.46937 * 150.00042 * 3 2 1 34 34 H 1.08000 * 119.96783 * 0.27646 * 5 4 2 35 35 H 1.07998 * 120.04071 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.58853 * 246.14982 * 11 10 8 37 37 H 1.09005 * 109.58974 * 6.43276 * 11 10 8 38 38 H 1.09002 * 109.49768 * 174.58739 * 12 11 10 39 39 H 1.08996 * 109.49423 * 294.65150 * 12 11 10 40 40 H 1.09004 * 109.45246 * 58.66156 * 13 12 11 41 41 H 1.08993 * 109.45800 * 178.61220 * 13 12 11 42 42 H 0.96994 * 120.00256 * 334.99827 * 16 14 13 43 43 H 0.96999 * 120.00086 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.59075 * 353.42122 * 25 10 8 45 45 H 1.08996 * 109.58531 * 113.85109 * 25 10 8 46 46 H 1.08003 * 120.03229 * 179.97438 * 26 7 6 47 47 H 1.08000 * 119.96905 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2041 0.0005 5 6 1.4627 -2.4089 0.0005 6 6 2.1479 -3.6023 0.0005 7 6 3.5459 -3.6040 0.0011 8 6 4.2835 -4.8815 0.0017 9 8 3.9068 -5.8014 -0.6987 10 7 5.3750 -5.0291 0.7785 11 6 5.7687 -3.9759 1.7241 12 6 5.9174 -4.5947 3.1176 13 6 6.8920 -5.7725 3.0470 14 6 6.3371 -6.8400 2.1011 15 1 5.3621 -7.1712 2.4583 16 7 7.2556 -7.9806 2.0586 17 6 6.7877 -9.2243 1.7276 18 1 5.7417 -9.3644 1.4983 19 6 7.6581 -10.3050 1.6867 20 7 8.9327 -10.1343 1.9666 21 14 7.0200 -12.0013 1.2345 22 1 5.5615 -11.9263 0.9660 23 1 7.7223 -12.4866 0.0194 24 1 7.2693 -12.9397 2.3582 25 6 6.1901 -6.2490 0.7001 26 6 4.2433 -2.3925 0.0011 27 6 3.5525 -1.2024 0.0011 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3791 1.5835 -1.0277 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 0.3827 -2.4070 -0.0044 35 1 1.6063 -4.5367 0.0001 36 1 6.7195 -3.5426 1.4134 37 1 5.0035 -3.1999 1.7463 38 1 6.3019 -3.8452 3.8094 39 1 4.9459 -4.9461 3.4651 40 1 7.8560 -5.4243 2.6762 41 1 7.0185 -6.1992 4.0420 42 1 8.1949 -7.8549 2.2648 43 1 9.5408 -10.8895 1.9384 44 1 5.7016 -6.9737 0.0488 45 1 7.1759 -6.0049 0.3042 46 1 5.3234 -2.3905 0.0019 47 1 4.0908 -0.2661 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000778513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:50 Heat of formation + Delta-G solvation = 0.273803 kcal Electronic energy + Delta-G solvation = -26487.349867 eV Core-core repulsion = 22862.734771 eV Total energy + Delta-G solvation = -3624.615096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56741 -40.17194 -38.65339 -37.02712 -36.18251 -33.95334 -32.74575 -32.22792 -31.39483 -29.79843 -28.98660 -27.08200 -25.90213 -25.52319 -23.51018 -23.01705 -22.66772 -21.44204 -20.31654 -19.16643 -18.51360 -17.98089 -17.19619 -16.77942 -16.69024 -16.03961 -15.94469 -15.69772 -15.61877 -15.41283 -15.15604 -14.98589 -14.57900 -14.39378 -14.08931 -13.93446 -13.69671 -13.48841 -13.41053 -13.27982 -13.06811 -12.91354 -12.88470 -12.83168 -12.47577 -12.18444 -12.01991 -11.90797 -11.74398 -11.64521 -11.34907 -11.14591 -10.95475 -10.66079 -9.91488 -9.73748 -9.02333 -8.23738 -7.99843 -5.28912 0.19284 0.48350 1.42788 1.44206 1.54574 1.77873 2.06361 2.21342 2.52716 2.89307 3.33063 3.62201 3.75520 3.84988 3.97017 4.01241 4.08945 4.21346 4.26246 4.34050 4.38539 4.41898 4.43128 4.54612 4.57479 4.62168 4.69494 4.74438 4.83528 4.88634 4.91509 4.93208 4.96094 5.04315 5.09993 5.12694 5.24920 5.32804 5.39093 5.43272 5.46320 5.53052 5.63271 5.76464 6.23327 6.29804 6.46553 6.50697 7.19589 7.29784 8.01517 8.27971 9.22963 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.002649 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.916709 B =10568.510806 C =11208.013032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.633 5.633 3 C 0.082 3.918 4 C 0.235 3.765 5 C -0.209 4.209 6 C -0.031 4.031 7 C -0.209 4.209 8 C 0.552 3.448 9 O -0.601 6.601 10 N -0.600 5.600 11 C 0.097 3.903 12 C -0.121 4.121 13 C -0.117 4.117 14 C 0.167 3.833 15 H 0.026 0.974 16 N -0.729 5.729 17 C -0.244 4.244 18 H 0.062 0.938 19 C -0.068 4.068 20 N -0.963 5.963 21 Si 0.968 3.032 22 H -0.275 1.275 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.108 3.892 26 C -0.032 4.032 27 C -0.203 4.203 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.378 0.622 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.144 0.856 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.456 30.896 -0.179 34.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.341 5.341 3 C -0.060 4.060 4 C 0.129 3.871 5 C -0.231 4.231 6 C -0.050 4.050 7 C -0.215 4.215 8 C 0.344 3.656 9 O -0.484 6.484 10 N -0.332 5.332 11 C -0.024 4.024 12 C -0.160 4.160 13 C -0.155 4.155 14 C 0.058 3.942 15 H 0.044 0.956 16 N -0.369 5.369 17 C -0.376 4.376 18 H 0.080 0.920 19 C -0.261 4.261 20 N -0.613 5.613 21 Si 0.797 3.203 22 H -0.200 1.200 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.018 4.018 26 C -0.052 4.052 27 C -0.225 4.225 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.211 0.789 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.161 0.839 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.874 30.497 -0.561 33.936 hybrid contribution 0.205 -1.851 -0.421 1.909 sum -14.669 28.647 -0.982 32.199 Atomic orbital electron populations 1.21868 0.78240 1.03764 1.02137 1.46570 1.06224 1.03331 1.77983 1.21905 0.97916 0.83982 1.02159 1.18145 0.91754 0.86324 0.90832 1.20707 1.00592 0.90190 1.11627 1.20898 0.92334 0.98318 0.93493 1.19439 0.94339 0.92027 1.15648 1.19016 0.79793 0.88009 0.78810 1.90735 1.68516 1.44246 1.44883 1.48195 1.26397 1.19266 1.39303 1.22352 1.02590 0.89553 0.87886 1.21883 0.99303 0.97629 0.97163 1.21731 0.99547 0.95265 0.98954 1.20552 0.92969 0.87746 0.92960 0.95552 1.42500 1.08086 1.03767 1.82555 1.19533 0.93563 0.86741 1.37761 0.91957 1.25483 0.95881 1.01535 1.03196 1.69792 1.03343 1.31130 1.57034 0.85154 0.77556 0.80329 0.77231 1.19992 1.21719 1.21278 1.22114 0.93744 0.85803 1.00110 1.21206 1.00405 0.90159 0.93392 1.20835 0.91919 0.98906 1.10811 0.92414 0.89542 0.91247 0.92583 0.89638 0.90304 0.83897 0.86918 0.89127 0.86978 0.86915 0.92469 0.91100 0.91999 0.78894 0.93780 0.93613 0.91976 0.83875 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.18 127.77 1.30 1.89 16 2 N -0.63 -6.92 3.39 -747.29 -2.53 -9.46 16 3 C 0.08 0.46 10.18 127.77 1.30 1.76 16 4 C 0.24 3.82 6.55 38.47 0.25 4.07 16 5 C -0.21 -4.00 9.18 22.36 0.21 -3.80 16 6 C -0.03 -0.78 9.64 22.50 0.22 -0.57 16 7 C -0.21 -5.75 5.08 -20.08 -0.10 -5.85 16 8 C 0.55 20.23 7.29 86.69 0.63 20.86 16 9 O -0.60 -28.27 16.36 -3.99 -0.07 -28.33 16 10 N -0.60 -20.00 2.98 -823.52 -2.45 -22.45 16 11 C 0.10 2.17 4.93 86.37 0.43 2.60 16 12 C -0.12 -2.78 6.08 30.67 0.19 -2.60 16 13 C -0.12 -3.69 5.36 30.62 0.16 -3.53 16 14 C 0.17 7.14 2.91 44.92 0.13 7.27 16 15 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 16 N -0.73 -38.48 5.12 -323.25 -1.66 -40.14 16 17 C -0.24 -14.46 9.93 84.03 0.83 -13.62 16 18 H 0.06 3.73 7.83 -2.91 -0.02 3.71 16 19 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 20 N -0.96 -59.98 13.06 21.65 0.28 -59.70 16 21 Si 0.97 48.67 29.55 68.60 2.03 50.70 16 22 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 25 C 0.11 4.49 6.00 86.22 0.52 5.00 16 26 C -0.03 -0.64 7.38 22.50 0.17 -0.47 16 27 C -0.20 -3.11 9.18 22.36 0.21 -2.90 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.09 0.31 8.07 -2.39 -0.02 0.29 16 30 H 0.07 0.54 6.17 -2.39 -0.01 0.53 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.08 0.20 8.07 -2.39 -0.02 0.18 16 33 H 0.08 0.35 6.17 -2.39 -0.01 0.34 16 34 H 0.14 2.13 6.11 -2.91 -0.02 2.12 16 35 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.09 1.64 8.13 -2.39 -0.02 1.62 16 37 H 0.11 2.05 4.81 -2.38 -0.01 2.04 16 38 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.38 20.74 7.80 -92.71 -0.72 20.02 16 43 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.05 2.30 6.99 -2.39 -0.02 2.28 16 45 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.14 2.35 6.73 -2.91 -0.02 2.33 16 47 H 0.16 1.46 6.11 -2.91 -0.02 1.44 16 Total: -1.00 -79.46 371.56 2.76 -76.70 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.25 Total: 26.18 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.90 Total: 6.50 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -6.36 Total: -131.74 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.07 Total: -28.33 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -79.46 2.76 -76.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000778513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.975 kcal (2) G-P(sol) polarization free energy of solvation -79.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds