Wall clock time and date at job start Tue Mar 31 2020 11:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00133 * 2 1 4 4 C 1.50700 * 109.47056 * 89.99930 * 3 2 1 5 5 O 1.21283 * 120.00281 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99929 * 179.97438 * 4 3 2 7 7 C 1.46931 * 120.63029 * 359.97438 * 6 4 3 8 8 C 1.53200 * 108.77279 * 126.41292 * 7 6 4 9 9 C 1.53039 * 109.31160 * 54.63574 * 8 7 6 10 10 C 1.53046 * 109.52798 * 298.64112 * 9 8 7 11 11 H 1.08994 * 109.49581 * 301.40708 * 10 9 8 12 12 N 1.46501 * 109.49630 * 181.31171 * 10 9 8 13 13 C 1.36935 * 119.99704 * 155.00148 * 12 10 9 14 14 H 1.07997 * 120.00376 * 359.97438 * 13 12 10 15 15 C 1.38819 * 119.99849 * 179.97438 * 13 12 10 16 16 N 1.31607 * 120.00128 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99778 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.46785 * 90.00209 * 17 15 13 19 19 H 1.48498 * 109.46793 * 210.00150 * 17 15 13 20 20 H 1.48500 * 109.47066 * 330.00298 * 17 15 13 21 21 C 1.46928 * 120.63179 * 180.02562 * 6 4 3 22 22 C 1.39679 * 119.99490 * 180.02562 * 2 1 3 23 23 C 1.38916 * 120.07300 * 179.72515 * 22 2 1 24 24 C 1.38104 * 119.92528 * 179.76495 * 23 22 2 25 25 C 1.38286 * 120.07117 * 0.50961 * 24 23 22 26 26 C 1.38287 * 120.15452 * 359.74288 * 25 24 23 27 27 C 1.38105 * 120.06888 * 359.97438 * 26 25 24 28 28 H 1.09007 * 109.47236 * 90.00060 * 1 2 3 29 29 H 1.09003 * 109.47424 * 210.00015 * 1 2 3 30 30 H 1.08997 * 109.47120 * 330.00385 * 1 2 3 31 31 H 1.09000 * 109.47245 * 329.99669 * 3 2 1 32 32 H 1.09001 * 109.46957 * 209.99680 * 3 2 1 33 33 H 1.08998 * 109.58425 * 6.63242 * 7 6 4 34 34 H 1.08995 * 109.70793 * 246.26860 * 7 6 4 35 35 H 1.08997 * 109.49280 * 294.68615 * 8 7 6 36 36 H 1.08996 * 109.52417 * 174.60413 * 8 7 6 37 37 H 1.09002 * 109.46050 * 58.65698 * 9 8 7 38 38 H 1.09004 * 109.46034 * 178.62914 * 9 8 7 39 39 H 0.97005 * 119.99942 * 334.99860 * 12 10 9 40 40 H 0.97001 * 120.00347 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.58766 * 353.37877 * 21 6 4 42 42 H 1.09002 * 109.58364 * 113.65972 * 21 6 4 43 43 H 1.07998 * 120.03347 * 0.02562 * 23 22 2 44 44 H 1.08001 * 119.96060 * 180.25446 * 24 23 22 45 45 H 1.08003 * 119.92575 * 179.76737 * 25 24 23 46 46 H 1.07992 * 119.96609 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.03210 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 8 2.0550 1.0210 2.3427 6 7 3.1116 2.8510 1.6671 7 6 3.5962 3.6878 0.5609 8 6 3.0723 5.1142 0.7557 9 6 3.4730 5.6153 2.1451 10 6 2.8428 4.7188 3.2136 11 1 1.7587 4.7264 3.1016 12 7 3.2012 5.2175 4.5436 13 6 2.3971 4.9427 5.6174 14 1 1.4985 4.3587 5.4837 15 6 2.7369 5.4147 6.8779 16 7 1.9638 5.1511 7.9098 17 14 4.2916 6.4243 7.1092 18 1 3.9783 7.8643 6.9269 19 1 4.8262 6.2032 8.4769 20 1 5.3059 6.0077 6.1078 21 6 3.3646 3.2880 3.0469 22 6 2.1633 -1.2097 -0.0005 23 6 3.5524 -1.2116 -0.0063 24 6 4.2397 -2.4094 -0.0019 25 6 3.5466 -3.6061 -0.0024 26 6 2.1638 -3.6079 -0.0020 27 6 1.4703 -2.4136 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6085 2.0283 -0.5139 32 1 3.1499 1.1383 -0.5138 33 1 3.2300 3.2902 -0.3856 34 1 4.6861 3.6963 0.5565 35 1 1.9859 5.1180 0.6669 36 1 3.5017 5.7670 -0.0043 37 1 4.5583 5.5878 2.2420 38 1 3.1224 6.6389 2.2771 39 1 4.0082 5.7423 4.6637 40 1 2.2010 5.4812 8.7905 41 1 2.8459 2.6265 3.7406 42 1 4.4356 3.2612 3.2480 43 1 4.0942 -0.2774 -0.0100 44 1 5.3198 -2.4116 -0.0022 45 1 4.0866 -4.5415 -0.0028 46 1 1.6256 -4.5441 -0.0020 47 1 0.3903 -2.4157 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001040938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:15 Heat of formation + Delta-G solvation = 2.215047 kcal Electronic energy + Delta-G solvation = -26793.196451 eV Core-core repulsion = 23168.665534 eV Total energy + Delta-G solvation = -3624.530917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41715 -40.23073 -38.75423 -36.83450 -36.32909 -34.04412 -32.90532 -32.11408 -31.24307 -30.53798 -29.39361 -26.72153 -25.76253 -25.38880 -23.20639 -23.11947 -22.28055 -21.52498 -20.07693 -19.54307 -18.68636 -18.30197 -17.19250 -16.86987 -16.54143 -16.31156 -16.12720 -15.74446 -15.58096 -15.28087 -15.09031 -14.95259 -14.59402 -14.43614 -14.38599 -14.16484 -13.93449 -13.79786 -13.44475 -13.31936 -12.99204 -12.93739 -12.82924 -12.53345 -12.26900 -12.18778 -11.93066 -11.88364 -11.78008 -11.68098 -11.36589 -11.28322 -11.12487 -10.55019 -9.82617 -9.79685 -9.26803 -8.24158 -8.07479 -5.43688 0.56520 0.72083 1.34204 1.40131 1.47105 1.61874 1.85251 2.29009 2.44620 3.02820 3.23235 3.50050 3.58697 3.89074 3.97481 3.98711 4.05953 4.11435 4.14647 4.25076 4.28699 4.33948 4.35304 4.42140 4.61146 4.63953 4.64415 4.71388 4.73601 4.85580 4.86296 4.89425 4.91749 5.02919 5.14801 5.16594 5.35265 5.36685 5.45540 5.50392 5.62289 5.71394 5.76577 5.98805 6.16424 6.21664 6.49000 6.55985 7.01721 7.22466 7.74907 7.96708 9.14506 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.003036 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.360321 B = 9220.824402 C = 9760.762396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.620 5.620 3 C 0.115 3.885 4 C 0.476 3.524 5 O -0.589 6.589 6 N -0.606 5.606 7 C 0.099 3.901 8 C -0.122 4.122 9 C -0.122 4.122 10 C 0.171 3.829 11 H 0.029 0.971 12 N -0.745 5.745 13 C -0.239 4.239 14 H 0.042 0.958 15 C -0.066 4.066 16 N -0.986 5.986 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.297 1.297 20 H -0.247 1.247 21 C 0.106 3.894 22 C 0.204 3.796 23 C -0.213 4.213 24 C -0.083 4.083 25 C -0.191 4.191 26 C -0.081 4.081 27 C -0.212 4.212 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.370 0.630 40 H 0.259 0.741 41 H 0.035 0.965 42 H 0.062 0.938 43 H 0.122 0.878 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -8.514 -28.114 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.330 5.330 3 C -0.013 4.013 4 C 0.264 3.736 5 O -0.468 6.468 6 N -0.340 5.340 7 C -0.022 4.022 8 C -0.161 4.161 9 C -0.160 4.160 10 C 0.062 3.938 11 H 0.047 0.953 12 N -0.388 5.388 13 C -0.370 4.370 14 H 0.060 0.940 15 C -0.257 4.257 16 N -0.636 5.636 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.224 1.224 20 H -0.171 1.171 21 C -0.020 4.020 22 C 0.103 3.897 23 C -0.235 4.235 24 C -0.101 4.101 25 C -0.211 4.211 26 C -0.099 4.099 27 C -0.234 4.234 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.204 0.796 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.140 0.860 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.158 0.842 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.559 -8.786 -27.536 29.261 hybrid contribution 0.328 0.477 1.692 1.788 sum 4.887 -8.309 -25.844 27.583 Atomic orbital electron populations 1.21721 0.78399 1.02541 1.02094 1.46166 1.05537 1.02045 1.79204 1.21545 1.01222 0.87425 0.91063 1.22450 0.77020 0.80326 0.93816 1.90717 1.52636 1.55129 1.48328 1.48409 1.55855 1.22371 1.07392 1.22188 1.00687 0.90375 0.88973 1.21889 1.01809 0.96216 0.96150 1.21810 1.01102 0.98843 0.94286 1.20647 0.96905 0.91682 0.84615 0.95319 1.42671 1.27604 1.64135 1.04392 1.18940 1.03126 1.27232 0.87653 0.94028 1.25646 1.02609 1.02570 0.94871 1.69915 1.41412 1.52225 1.00003 0.85274 0.79570 0.78820 0.77235 1.19770 1.22355 1.17108 1.22098 0.99760 0.97322 0.82789 1.18073 0.91705 0.86257 0.93672 1.20841 0.92303 0.99333 1.11000 1.21180 1.00494 0.91943 0.96504 1.21214 0.94556 0.98534 1.06822 1.21205 0.94644 0.97725 0.96372 1.20927 1.00368 0.91387 1.10694 0.90414 0.91889 0.92406 0.84334 0.85242 0.86200 0.89299 0.91849 0.86603 0.90649 0.91363 0.79568 0.93205 0.94605 0.91941 0.86031 0.84543 0.84620 0.84210 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 10.19 127.77 1.30 3.12 16 2 N -0.62 -13.93 2.50 -726.56 -1.81 -15.75 16 3 C 0.11 2.13 3.99 85.63 0.34 2.47 16 4 C 0.48 14.32 7.77 87.66 0.68 15.00 16 5 O -0.59 -25.35 15.84 -3.04 -0.05 -25.40 16 6 N -0.61 -16.62 2.97 -818.85 -2.43 -19.06 16 7 C 0.10 1.47 6.34 86.36 0.55 2.02 16 8 C -0.12 -1.95 6.08 30.67 0.19 -1.76 16 9 C -0.12 -3.09 5.36 30.62 0.16 -2.93 16 10 C 0.17 6.51 2.92 45.08 0.13 6.64 16 11 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 12 N -0.74 -35.24 4.93 -322.54 -1.59 -36.83 16 13 C -0.24 -14.25 10.41 84.04 0.88 -13.37 16 14 H 0.04 2.82 8.06 -2.91 -0.02 2.80 16 15 C -0.07 -3.99 5.50 84.87 0.47 -3.53 16 16 N -0.99 -65.55 13.97 21.65 0.30 -65.25 16 17 Si 0.97 45.88 27.74 68.60 1.90 47.79 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 20 H -0.25 -10.38 6.52 99.48 0.65 -9.73 16 21 C 0.11 4.02 6.02 86.37 0.52 4.54 16 22 C 0.20 5.05 6.55 38.21 0.25 5.30 16 23 C -0.21 -5.00 9.21 22.40 0.21 -4.80 16 24 C -0.08 -1.74 10.04 22.25 0.22 -1.52 16 25 C -0.19 -3.82 10.04 22.29 0.22 -3.60 16 26 C -0.08 -1.65 10.04 22.25 0.22 -1.42 16 27 C -0.21 -4.85 9.21 22.40 0.21 -4.65 16 28 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.06 1.27 6.20 -2.39 -0.01 1.25 16 30 H 0.06 1.19 8.07 -2.39 -0.02 1.18 16 31 H 0.14 1.58 7.62 -2.39 -0.02 1.57 16 32 H 0.13 1.71 5.99 -2.39 -0.01 1.69 16 33 H 0.12 0.85 5.93 -2.39 -0.01 0.83 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.37 16.25 5.66 -92.70 -0.52 15.72 16 40 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 41 H 0.04 1.75 7.01 -2.39 -0.02 1.73 16 42 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.12 2.55 6.14 -2.91 -0.02 2.54 16 44 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 46 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 47 H 0.13 2.59 6.14 -2.91 -0.02 2.57 16 Total: -1.00 -86.49 372.71 3.26 -83.23 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.38 Total: 29.74 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.55 Total: 1.53 kcal Atomic # 7 Polarization: -131.35 SS G_CDS: -5.53 Total: -136.88 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.79 kcal Total: -86.49 3.26 -83.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001040938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.447 kcal (2) G-P(sol) polarization free energy of solvation -86.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds