Wall clock time and date at job start Tue Mar 31 2020 11:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46920 * 120.63110 * 0.02562 * 6 4 3 8 8 C 1.53195 * 108.77715 * 233.58100 * 7 6 4 9 9 C 1.53040 * 109.31233 * 305.37008 * 8 7 6 10 10 C 1.53040 * 109.54077 * 61.36216 * 9 8 7 11 11 H 1.08993 * 109.49843 * 58.61494 * 10 9 8 12 12 N 1.46496 * 109.49869 * 178.68822 * 10 9 8 13 13 C 1.36939 * 119.99721 * 205.00329 * 12 10 9 14 14 H 1.07994 * 120.00487 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99822 * 179.97438 * 13 12 10 16 16 N 1.31616 * 120.00305 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00111 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47092 * 90.00190 * 17 15 13 19 19 H 1.48497 * 109.47106 * 210.00216 * 17 15 13 20 20 H 1.48500 * 109.46742 * 330.00026 * 17 15 13 21 21 C 1.46928 * 120.62698 * 179.72199 * 6 4 3 22 22 C 1.39668 * 120.00128 * 180.02562 * 2 1 3 23 23 C 1.38909 * 120.07641 * 179.72375 * 22 2 1 24 24 C 1.38106 * 119.92498 * 179.76808 * 23 22 2 25 25 C 1.38284 * 120.07617 * 0.50379 * 24 23 22 26 26 C 1.38285 * 120.14958 * 359.75089 * 25 24 23 27 27 C 1.38108 * 120.07354 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 29 29 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 30 30 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 32 32 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 33 33 H 1.09002 * 109.58578 * 353.37442 * 7 6 4 34 34 H 1.09004 * 109.58605 * 113.79667 * 7 6 4 35 35 H 1.09001 * 109.49283 * 65.31632 * 8 7 6 36 36 H 1.08994 * 109.49604 * 185.38351 * 8 7 6 37 37 H 1.09004 * 109.45891 * 181.38330 * 9 8 7 38 38 H 1.09007 * 109.45958 * 301.35580 * 9 8 7 39 39 H 0.97000 * 120.00619 * 24.99124 * 12 10 9 40 40 H 0.97000 * 120.00495 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.58457 * 246.20343 * 21 6 4 42 42 H 1.09001 * 109.58558 * 6.62966 * 21 6 4 43 43 H 1.08004 * 120.03453 * 359.97438 * 23 22 2 44 44 H 1.08008 * 119.96053 * 180.24920 * 24 23 22 45 45 H 1.08004 * 119.92377 * 179.76405 * 25 24 23 46 46 H 1.07997 * 119.96466 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.03543 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0550 1.0209 2.3426 6 7 3.1115 2.8511 1.6671 7 6 3.5950 3.6886 0.5610 8 6 5.0923 3.9471 0.7561 9 6 5.3259 4.5446 2.1455 10 6 4.8639 3.5513 3.2142 11 1 5.4123 2.6159 3.1028 12 7 5.1168 4.1111 4.5441 13 6 5.2803 3.2775 5.6181 14 1 5.2225 2.2073 5.4848 15 6 5.5204 3.8079 6.8782 16 7 5.6771 3.0067 7.9106 17 14 5.6212 5.6589 7.1087 18 1 4.2700 6.1941 7.4137 19 1 6.5414 5.9684 8.2325 20 1 6.1325 6.2857 5.8633 21 6 3.3587 3.2915 3.0469 22 6 2.1634 -1.2095 -0.0005 23 6 3.5525 -1.2114 -0.0063 24 6 4.2399 -2.4092 -0.0020 25 6 3.5470 -3.6059 -0.0024 26 6 2.1641 -3.6077 -0.0020 27 6 1.4704 -2.4135 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6083 2.0284 -0.5138 32 1 3.1498 1.1384 -0.5139 33 1 3.4334 3.1727 -0.3855 34 1 3.0577 4.6370 0.5589 35 1 5.6381 3.0077 0.6676 36 1 5.4431 4.6448 -0.0043 37 1 6.3878 4.7523 2.2776 38 1 4.7598 5.4711 2.2422 39 1 5.1686 5.0723 4.6640 40 1 5.8453 3.3774 8.7911 41 1 2.8026 4.2082 3.2430 42 1 3.0413 2.5134 3.7411 43 1 4.0943 -0.2771 -0.0109 44 1 5.3200 -2.4113 -0.0024 45 1 4.0870 -4.5412 -0.0029 46 1 1.6260 -4.5441 -0.0019 47 1 0.3904 -2.4157 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001040939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:20 Heat of formation + Delta-G solvation = 26.111955 kcal Electronic energy + Delta-G solvation = -26935.641745 eV Core-core repulsion = 23312.147076 eV Total energy + Delta-G solvation = -3623.494670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.31122 -39.24599 -37.46285 -35.89435 -34.64131 -32.38080 -31.38922 -31.16773 -30.18018 -29.31191 -28.26079 -25.68153 -24.57675 -23.75118 -22.28436 -21.77695 -21.21005 -20.22299 -18.85081 -17.82727 -17.56950 -17.20333 -16.12975 -15.66736 -15.31721 -15.15828 -14.67919 -14.47785 -14.31807 -14.25961 -14.00816 -13.63976 -13.51776 -13.40666 -13.03798 -12.81678 -12.61882 -12.60010 -12.46909 -12.14937 -11.91848 -11.66956 -11.42216 -11.25941 -10.95581 -10.83699 -10.76055 -10.67201 -10.30810 -10.25106 -9.92532 -9.60268 -9.46794 -9.11457 -8.89458 -8.40083 -7.37099 -7.28437 -5.77491 -3.15183 1.46689 1.62757 2.75823 2.80197 3.28823 3.35619 3.37943 3.44002 3.93338 4.53358 4.57041 4.69567 4.72938 4.80734 4.91608 4.96301 5.04064 5.11140 5.13063 5.24006 5.32983 5.36015 5.42117 5.44393 5.47844 5.51680 5.65259 5.67334 5.73070 5.77190 5.86847 5.98693 6.00548 6.04388 6.19695 6.23938 6.36205 6.49625 6.62800 6.65811 6.71319 6.83270 6.88677 7.09817 7.40976 7.61730 7.98431 8.37409 8.41718 9.18194 9.89660 10.07969 11.40544 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.003294 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.138735 B = 8499.472289 C = 9180.980152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.613 5.613 3 C 0.107 3.893 4 C 0.484 3.516 5 O -0.522 6.522 6 N -0.609 5.609 7 C 0.107 3.893 8 C -0.130 4.130 9 C -0.129 4.129 10 C 0.174 3.826 11 H 0.059 0.941 12 N -0.743 5.743 13 C -0.249 4.249 14 H 0.091 0.909 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.093 3.907 22 C 0.224 3.776 23 C -0.192 4.192 24 C -0.071 4.071 25 C -0.182 4.182 26 C -0.075 4.075 27 C -0.196 4.196 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.455 -3.701 -24.260 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.323 5.323 3 C -0.021 4.021 4 C 0.269 3.731 5 O -0.397 6.397 6 N -0.345 5.345 7 C -0.017 4.017 8 C -0.169 4.169 9 C -0.168 4.168 10 C 0.063 3.937 11 H 0.077 0.923 12 N -0.385 5.385 13 C -0.378 4.378 14 H 0.109 0.891 15 C -0.189 4.189 16 N -0.578 5.578 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.031 4.031 22 C 0.123 3.877 23 C -0.215 4.215 24 C -0.090 4.090 25 C -0.202 4.202 26 C -0.094 4.094 27 C -0.218 4.218 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.752 -4.125 -23.571 25.153 hybrid contribution 0.108 1.537 0.514 1.624 sum -7.644 -2.589 -23.056 24.428 Atomic orbital electron populations 1.21603 0.79116 1.03162 1.00534 1.45939 1.04830 1.01896 1.79657 1.21352 0.99233 0.87014 0.94493 1.21396 0.78577 0.80906 0.92253 1.90741 1.50216 1.52827 1.45939 1.48333 1.55896 1.22192 1.08080 1.21737 0.95320 0.95340 0.89280 1.21876 0.95380 1.01720 0.97900 1.21862 1.01909 0.99033 0.93967 1.20546 0.92266 0.95967 0.84915 0.92292 1.42723 1.86799 1.04970 1.03977 1.19101 1.41687 0.91428 0.85609 0.89096 1.24683 1.01600 0.97081 0.95489 1.69706 1.55324 1.33395 0.99345 0.86560 0.77703 0.87060 0.77243 1.21066 1.21685 1.20303 1.22759 0.99243 1.00361 0.80756 1.17770 0.91169 0.85489 0.93257 1.20645 0.92156 0.98644 1.10007 1.20885 0.99489 0.91968 0.96658 1.20885 0.94280 0.97763 1.07227 1.20855 0.94253 0.97044 0.97221 1.20637 0.99531 0.91086 1.10528 0.93327 0.91171 0.91653 0.88098 0.87897 0.90451 0.91353 0.91364 0.90874 0.91333 0.92169 0.80499 0.92990 0.92332 0.88818 0.86558 0.86245 0.86623 0.86389 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 10.19 59.85 0.61 1.55 16 2 N -0.61 -7.25 2.50 -181.00 -0.45 -7.70 16 3 C 0.11 1.12 3.99 -5.19 -0.02 1.10 16 4 C 0.48 7.32 7.77 -10.98 -0.09 7.23 16 5 O -0.52 -10.62 15.84 5.56 0.09 -10.53 16 6 N -0.61 -8.67 2.97 -172.47 -0.51 -9.18 16 7 C 0.11 1.03 6.34 -3.71 -0.02 1.01 16 8 C -0.13 -1.34 6.08 -26.61 -0.16 -1.51 16 9 C -0.13 -1.83 5.35 -26.69 -0.14 -1.98 16 10 C 0.17 3.29 2.94 -67.57 -0.20 3.09 16 11 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 12 N -0.74 -17.39 4.93 -53.08 -0.26 -17.65 16 13 C -0.25 -7.09 10.42 -15.06 -0.16 -7.24 16 14 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 15 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 16 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16 17 Si 0.88 22.02 27.73 -169.99 -4.71 17.31 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 21 C 0.09 1.70 6.05 -3.46 -0.02 1.68 16 22 C 0.22 2.93 6.55 -83.79 -0.55 2.39 16 23 C -0.19 -2.51 9.21 -39.38 -0.36 -2.87 16 24 C -0.07 -0.86 10.04 -39.61 -0.40 -1.26 16 25 C -0.18 -2.07 10.04 -39.55 -0.40 -2.47 16 26 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 27 C -0.20 -2.35 9.21 -39.38 -0.36 -2.71 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.67 6.20 -51.93 -0.32 0.35 16 30 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.10 0.76 7.87 -51.93 -0.41 0.35 16 32 H 0.10 0.92 5.73 -51.93 -0.30 0.62 16 33 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.36 8.22 5.66 -40.82 -0.23 7.99 16 40 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 2.10 7.00 -51.93 -0.36 1.74 16 43 H 0.12 1.42 6.14 -52.48 -0.32 1.10 16 44 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 45 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 47 H 0.12 1.23 6.14 -52.49 -0.32 0.90 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -35.82 372.75 -9.46 -45.27 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.23 Total: 8.81 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.76 Total: -3.09 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.45 Total: -63.39 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.82 -9.46 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001040939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.383 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds