Wall clock time and date at job start Tue Mar 31 2020 11:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46920 * 120.63110 * 0.02562 * 6 4 3 8 8 C 1.53195 * 108.77715 * 233.58100 * 7 6 4 9 9 C 1.53040 * 109.31233 * 305.37008 * 8 7 6 10 10 C 1.53040 * 109.54077 * 61.36216 * 9 8 7 11 11 H 1.08993 * 109.49843 * 58.61494 * 10 9 8 12 12 N 1.46496 * 109.49869 * 178.68822 * 10 9 8 13 13 C 1.36939 * 119.99721 * 205.00329 * 12 10 9 14 14 H 1.07994 * 120.00487 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99822 * 179.97438 * 13 12 10 16 16 N 1.31616 * 120.00305 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00111 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47092 * 90.00190 * 17 15 13 19 19 H 1.48497 * 109.47106 * 210.00216 * 17 15 13 20 20 H 1.48500 * 109.46742 * 330.00026 * 17 15 13 21 21 C 1.46928 * 120.62698 * 179.72199 * 6 4 3 22 22 C 1.39668 * 120.00128 * 180.02562 * 2 1 3 23 23 C 1.38909 * 120.07641 * 179.72375 * 22 2 1 24 24 C 1.38106 * 119.92498 * 179.76808 * 23 22 2 25 25 C 1.38284 * 120.07617 * 0.50379 * 24 23 22 26 26 C 1.38285 * 120.14958 * 359.75089 * 25 24 23 27 27 C 1.38108 * 120.07354 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 29 29 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 30 30 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 32 32 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 33 33 H 1.09002 * 109.58578 * 353.37442 * 7 6 4 34 34 H 1.09004 * 109.58605 * 113.79667 * 7 6 4 35 35 H 1.09001 * 109.49283 * 65.31632 * 8 7 6 36 36 H 1.08994 * 109.49604 * 185.38351 * 8 7 6 37 37 H 1.09004 * 109.45891 * 181.38330 * 9 8 7 38 38 H 1.09007 * 109.45958 * 301.35580 * 9 8 7 39 39 H 0.97000 * 120.00619 * 24.99124 * 12 10 9 40 40 H 0.97000 * 120.00495 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.58457 * 246.20343 * 21 6 4 42 42 H 1.09001 * 109.58558 * 6.62966 * 21 6 4 43 43 H 1.08004 * 120.03453 * 359.97438 * 23 22 2 44 44 H 1.08008 * 119.96053 * 180.24920 * 24 23 22 45 45 H 1.08004 * 119.92377 * 179.76405 * 25 24 23 46 46 H 1.07997 * 119.96466 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.03543 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0550 1.0209 2.3426 6 7 3.1115 2.8511 1.6671 7 6 3.5950 3.6886 0.5610 8 6 5.0923 3.9471 0.7561 9 6 5.3259 4.5446 2.1455 10 6 4.8639 3.5513 3.2142 11 1 5.4123 2.6159 3.1028 12 7 5.1168 4.1111 4.5441 13 6 5.2803 3.2775 5.6181 14 1 5.2225 2.2073 5.4848 15 6 5.5204 3.8079 6.8782 16 7 5.6771 3.0067 7.9106 17 14 5.6212 5.6589 7.1087 18 1 4.2700 6.1941 7.4137 19 1 6.5414 5.9684 8.2325 20 1 6.1325 6.2857 5.8633 21 6 3.3587 3.2915 3.0469 22 6 2.1634 -1.2095 -0.0005 23 6 3.5525 -1.2114 -0.0063 24 6 4.2399 -2.4092 -0.0020 25 6 3.5470 -3.6059 -0.0024 26 6 2.1641 -3.6077 -0.0020 27 6 1.4704 -2.4135 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6083 2.0284 -0.5138 32 1 3.1498 1.1384 -0.5139 33 1 3.4334 3.1727 -0.3855 34 1 3.0577 4.6370 0.5589 35 1 5.6381 3.0077 0.6676 36 1 5.4431 4.6448 -0.0043 37 1 6.3878 4.7523 2.2776 38 1 4.7598 5.4711 2.2422 39 1 5.1686 5.0723 4.6640 40 1 5.8453 3.3774 8.7911 41 1 2.8026 4.2082 3.2430 42 1 3.0413 2.5134 3.7411 43 1 4.0943 -0.2771 -0.0109 44 1 5.3200 -2.4113 -0.0024 45 1 4.0870 -4.5412 -0.0029 46 1 1.6260 -4.5441 -0.0019 47 1 0.3904 -2.4157 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001040939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:19 Heat of formation + Delta-G solvation = 2.187980 kcal Electronic energy + Delta-G solvation = -26936.679167 eV Core-core repulsion = 23312.147076 eV Total energy + Delta-G solvation = -3624.532091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41187 -40.22726 -38.74698 -36.83276 -36.32726 -34.04155 -32.90303 -32.11939 -31.23936 -30.53492 -29.38502 -26.71426 -25.75913 -25.38259 -23.21282 -23.11923 -22.29541 -21.53106 -20.06076 -19.52864 -18.70531 -18.32910 -17.17103 -16.78506 -16.58734 -16.32595 -16.17228 -15.71456 -15.56683 -15.26571 -15.12882 -14.95068 -14.57422 -14.43921 -14.39488 -14.18664 -13.90762 -13.78750 -13.44029 -13.31719 -12.99291 -12.92792 -12.82407 -12.59154 -12.27631 -12.10846 -11.93952 -11.87635 -11.79326 -11.67683 -11.39259 -11.28309 -11.13229 -10.54674 -9.82194 -9.80460 -9.26234 -8.23932 -8.07273 -5.43749 0.55662 0.71242 1.34014 1.40032 1.47353 1.61892 1.86250 2.29797 2.44754 3.02004 3.23337 3.50244 3.58755 3.89209 3.96034 3.99772 4.06954 4.11437 4.13625 4.24835 4.27727 4.34964 4.35576 4.41372 4.61216 4.63444 4.64538 4.72139 4.74263 4.85248 4.86269 4.90058 4.91451 5.02622 5.14410 5.15989 5.34501 5.36397 5.45181 5.50785 5.61655 5.71557 5.75994 5.97566 6.16541 6.22498 6.49420 6.55571 7.01893 7.22841 7.74733 7.97049 9.14788 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.003294 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.138735 B = 8499.472289 C = 9180.980152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.620 5.620 3 C 0.114 3.886 4 C 0.476 3.524 5 O -0.589 6.589 6 N -0.607 5.607 7 C 0.099 3.901 8 C -0.124 4.124 9 C -0.121 4.121 10 C 0.170 3.830 11 H 0.025 0.975 12 N -0.744 5.744 13 C -0.240 4.240 14 H 0.040 0.960 15 C -0.065 4.065 16 N -0.986 5.986 17 Si 0.965 3.035 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.242 1.242 21 C 0.106 3.894 22 C 0.205 3.795 23 C -0.214 4.214 24 C -0.086 4.086 25 C -0.192 4.192 26 C -0.080 4.080 27 C -0.209 4.209 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.144 0.856 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.371 0.629 40 H 0.259 0.741 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.118 0.882 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.142 0.858 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 -1.108 -28.099 29.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.330 5.330 3 C -0.013 4.013 4 C 0.264 3.736 5 O -0.468 6.468 6 N -0.341 5.341 7 C -0.021 4.021 8 C -0.162 4.162 9 C -0.159 4.159 10 C 0.061 3.939 11 H 0.044 0.956 12 N -0.388 5.388 13 C -0.371 4.371 14 H 0.058 0.942 15 C -0.256 4.256 16 N -0.636 5.636 17 Si 0.791 3.209 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.166 1.166 21 C -0.020 4.020 22 C 0.104 3.896 23 C -0.236 4.236 24 C -0.104 4.104 25 C -0.212 4.212 26 C -0.099 4.099 27 C -0.231 4.231 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.205 0.795 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.136 0.864 44 H 0.150 0.850 45 H 0.153 0.847 46 H 0.160 0.840 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.127 -1.503 -27.522 28.737 hybrid contribution 0.207 0.580 1.696 1.804 sum -7.920 -0.923 -25.827 27.030 Atomic orbital electron populations 1.21737 0.78093 1.02709 1.02155 1.46167 1.05672 1.01885 1.79228 1.21549 1.01106 0.87561 0.91065 1.22454 0.77259 0.80101 0.93817 1.90716 1.52956 1.54796 1.48338 1.48417 1.55524 1.22707 1.07428 1.22192 0.94849 0.96151 0.88947 1.21897 0.95918 1.02180 0.96211 1.21802 1.01744 0.98167 0.94237 1.20733 0.92368 0.96188 0.84618 0.95646 1.42646 1.87013 1.04739 1.04363 1.18939 1.40518 0.89991 0.87617 0.94182 1.25647 1.01805 1.03334 0.94820 1.69923 1.57370 1.36299 0.99998 0.85275 0.77820 0.79560 0.78263 1.20375 1.22084 1.16602 1.22187 0.98405 0.98630 0.82744 1.18044 0.91494 0.86496 0.93602 1.20826 0.92583 0.99140 1.11067 1.21173 1.00395 0.92188 0.96674 1.21205 0.94736 0.98363 1.06853 1.21218 0.94466 0.97901 0.96305 1.20936 1.00448 0.91203 1.10546 0.90431 0.91914 0.91943 0.83829 0.85776 0.86283 0.88974 0.92156 0.86575 0.91591 0.90420 0.79530 0.93193 0.91503 0.94619 0.86395 0.85009 0.84723 0.84005 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.68 10.19 127.77 1.30 2.98 16 2 N -0.62 -13.85 2.50 -726.57 -1.81 -15.67 16 3 C 0.11 2.12 3.99 85.63 0.34 2.46 16 4 C 0.48 14.30 7.77 87.66 0.68 14.98 16 5 O -0.59 -25.32 15.84 -3.03 -0.05 -25.37 16 6 N -0.61 -16.60 2.97 -817.97 -2.43 -19.02 16 7 C 0.10 1.48 6.34 86.36 0.55 2.03 16 8 C -0.12 -2.04 6.08 30.67 0.19 -1.85 16 9 C -0.12 -3.11 5.35 30.62 0.16 -2.95 16 10 C 0.17 6.56 2.94 45.23 0.13 6.70 16 11 H 0.03 1.13 8.08 -2.39 -0.02 1.12 16 12 N -0.74 -35.40 4.93 -321.84 -1.59 -36.99 16 13 C -0.24 -14.42 10.42 84.03 0.88 -13.54 16 14 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 15 C -0.06 -3.95 5.50 84.86 0.47 -3.49 16 16 N -0.99 -65.85 13.97 21.65 0.30 -65.55 16 17 Si 0.97 45.89 27.73 68.60 1.90 47.79 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 20 H -0.24 -10.02 6.52 99.48 0.65 -9.37 16 21 C 0.11 4.00 6.05 86.52 0.52 4.53 16 22 C 0.21 5.29 6.55 38.22 0.25 5.54 16 23 C -0.21 -5.58 9.21 22.40 0.21 -5.37 16 24 C -0.09 -2.07 10.04 22.25 0.22 -1.85 16 25 C -0.19 -4.26 10.04 22.29 0.22 -4.04 16 26 C -0.08 -1.74 10.04 22.25 0.22 -1.51 16 27 C -0.21 -4.93 9.21 22.40 0.21 -4.72 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.17 6.20 -2.39 -0.01 1.16 16 30 H 0.06 1.12 8.07 -2.39 -0.02 1.10 16 31 H 0.14 1.46 7.87 -2.39 -0.02 1.44 16 32 H 0.12 1.80 5.73 -2.39 -0.01 1.79 16 33 H 0.12 0.86 5.93 -2.39 -0.01 0.85 16 34 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.37 16.27 5.66 -92.71 -0.52 15.75 16 40 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 41 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.04 1.74 7.00 -2.39 -0.02 1.72 16 43 H 0.12 2.86 6.14 -2.91 -0.02 2.84 16 44 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 46 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 47 H 0.13 2.64 6.14 -2.91 -0.02 2.62 16 Total: -1.00 -87.32 372.75 3.27 -84.05 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.38 Total: 30.86 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 6.55 Total: -0.11 kcal Atomic # 7 Polarization: -131.71 SS G_CDS: -5.52 Total: -137.23 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.37 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Total: -87.32 3.27 -84.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001040939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.237 kcal (2) G-P(sol) polarization free energy of solvation -87.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds