Wall clock time and date at job start Tue Mar 31 2020 11:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00211 * 2 1 4 4 O 1.21627 * 119.99606 * 185.40198 * 3 2 1 5 5 C 1.47259 * 120.00143 * 5.39366 * 3 2 1 6 6 C 1.46692 * 126.93959 * 320.05240 * 5 3 2 7 7 C 1.34486 * 106.32833 * 179.75086 * 6 5 3 8 8 N 1.36451 * 108.86027 * 0.22789 * 7 6 5 9 9 H 0.96995 * 124.85453 * 179.97438 * 8 7 6 10 10 C 1.34655 * 110.29401 * 359.97438 * 8 7 6 11 11 C 1.50705 * 125.80040 * 179.97438 * 10 8 7 12 12 C 1.53000 * 117.49803 * 8.78045 * 11 10 8 13 13 C 1.53000 * 117.50107 * 300.11472 * 11 10 8 14 14 C 1.46503 * 119.99521 * 179.97438 * 2 1 3 15 15 C 1.53035 * 109.46116 * 60.02877 * 14 2 1 16 16 C 1.53200 * 109.31493 * 178.59775 * 15 14 2 17 17 N 1.46923 * 108.76203 * 54.65295 * 16 15 14 18 18 C 1.36937 * 120.62881 * 126.40722 * 17 16 15 19 19 H 1.07995 * 120.00196 * 323.31469 * 18 17 16 20 20 C 1.38815 * 119.99840 * 143.31548 * 18 17 16 21 21 N 1.31614 * 120.00122 * 357.64829 * 20 18 17 22 22 Si 1.86801 * 119.99855 * 177.64884 * 20 18 17 23 23 H 1.48496 * 109.47208 * 89.99726 * 22 20 18 24 24 H 1.48502 * 109.46910 * 209.99908 * 22 20 18 25 25 H 1.48496 * 109.47170 * 329.99636 * 22 20 18 26 26 C 1.46925 * 118.74321 * 306.38610 * 17 16 15 27 27 C 1.53039 * 109.46293 * 299.96976 * 14 2 1 28 28 H 1.08998 * 109.47594 * 84.33676 * 1 2 3 29 29 H 1.09002 * 109.47102 * 204.33950 * 1 2 3 30 30 H 1.09002 * 109.46876 * 324.33858 * 1 2 3 31 31 H 1.07995 * 126.83805 * 0.02562 * 6 5 3 32 32 H 1.07997 * 125.57244 * 180.20674 * 7 6 5 33 33 H 1.09003 * 115.54735 * 154.44323 * 11 10 8 34 34 H 1.09001 * 117.49806 * 359.97438 * 12 11 10 35 35 H 1.08994 * 117.50062 * 145.01983 * 12 11 10 36 36 H 1.08992 * 117.49932 * 214.97601 * 13 11 10 37 37 H 1.09003 * 117.49448 * 0.02562 * 13 11 10 38 38 H 1.09008 * 109.45526 * 179.97438 * 14 2 1 39 39 H 1.08998 * 109.49731 * 298.56309 * 15 14 2 40 40 H 1.09003 * 109.49878 * 58.65910 * 15 14 2 41 41 H 1.08997 * 109.59385 * 294.86943 * 16 15 14 42 42 H 1.08993 * 109.70137 * 174.50725 * 16 15 14 43 43 H 0.97004 * 119.99992 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.58575 * 293.82607 * 26 17 16 45 45 H 1.08993 * 109.70875 * 173.46303 * 26 17 16 46 46 H 1.08999 * 109.50006 * 301.34073 * 27 14 2 47 47 H 1.08996 * 109.49755 * 61.43806 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3511 1.1694 -0.0992 5 6 1.4076 2.4397 0.1199 6 6 0.1317 2.7865 -0.5156 7 6 -0.1578 4.0398 -0.1231 8 7 0.8386 4.4871 0.6948 9 1 0.8639 5.3637 1.1093 10 6 1.7817 3.5377 0.8444 11 6 3.0344 3.6623 1.6728 12 6 3.1662 4.8918 2.5738 13 6 4.0162 4.7769 1.3059 14 6 2.1974 -1.2688 0.0006 15 6 1.8280 -2.0713 -1.2490 16 6 2.6218 -3.3815 -1.2629 17 7 2.3848 -4.0911 0.0016 18 6 1.9517 -5.3901 0.0021 19 1 1.2511 -5.7261 -0.7480 20 6 2.4133 -6.2753 0.9667 21 7 3.3022 -5.8785 1.8525 22 14 1.7727 -8.0296 1.0075 23 1 2.6354 -8.8913 0.1600 24 1 1.7924 -8.5313 2.4051 25 1 0.3812 -8.0606 0.4900 26 6 2.6216 -3.3805 1.2657 27 6 1.8280 -2.0702 1.2509 28 1 -0.3634 0.1014 -1.0226 29 1 -0.3633 -0.9363 0.4236 30 1 -0.3633 0.8350 0.5991 31 1 -0.4598 2.1586 -1.1654 32 1 -1.0353 4.6007 -0.4089 33 1 3.4519 2.7238 2.0378 34 1 2.3470 5.6108 2.5670 35 1 3.6707 4.7624 3.5312 36 1 5.0795 4.5719 1.4298 37 1 3.7558 5.4203 0.4654 38 1 3.2691 -1.0694 0.0000 39 1 0.7608 -2.2925 -1.2371 40 1 2.0696 -1.4904 -2.1391 41 1 3.6849 -3.1637 -1.3659 42 1 2.2933 -4.0014 -2.0970 43 1 3.6250 -6.4971 2.5263 44 1 3.6846 -3.1627 1.3688 45 1 2.2923 -3.9977 2.1015 46 1 2.0697 -1.4885 2.1405 47 1 0.7608 -2.2914 1.2392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005893877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:18 Heat of formation + Delta-G solvation = 61.475266 kcal Electronic energy + Delta-G solvation = -27068.477691 eV Core-core repulsion = 23446.516490 eV Total energy + Delta-G solvation = -3621.961201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51591 -39.31969 -37.13978 -37.06377 -34.86883 -32.52725 -31.14443 -29.96701 -29.45822 -29.24847 -26.66351 -25.21983 -23.51440 -22.71380 -22.39026 -22.04891 -21.07515 -20.57922 -18.85171 -18.35671 -17.87624 -16.71511 -16.13517 -15.76946 -15.44947 -14.93163 -14.70037 -14.44182 -14.21315 -13.84830 -13.54852 -13.41931 -13.28452 -12.90286 -12.79542 -12.44825 -12.39288 -12.27822 -11.92684 -11.86585 -11.80505 -11.38022 -10.98769 -10.93519 -10.78930 -10.69788 -10.68109 -10.21470 -10.11254 -10.01746 -9.73310 -9.58386 -9.36496 -8.86941 -8.45933 -8.27349 -8.04960 -6.47959 -5.74848 -3.28083 1.76922 2.35473 2.92159 3.32516 3.39666 3.45949 3.47201 3.56411 3.72136 4.27053 4.51627 4.54145 4.71685 4.79979 4.94583 5.06308 5.27178 5.34929 5.43575 5.44785 5.53437 5.56241 5.60406 5.62633 5.68829 5.75627 5.83954 5.89245 5.93859 5.97600 6.04469 6.21524 6.36292 6.49318 6.61647 6.63758 6.70967 6.75661 6.81148 6.89382 7.06625 7.14162 7.26081 7.45461 7.75235 7.83259 7.87099 8.56549 8.61586 9.28862 9.87785 10.49883 11.33233 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024492 B = 0.002905 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.976657 B = 9634.677537 C =10123.511085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.602 5.602 3 C 0.586 3.414 4 O -0.548 6.548 5 C -0.210 4.210 6 C -0.166 4.166 7 C -0.018 4.018 8 N -0.554 5.554 9 H 0.412 0.588 10 C 0.120 3.880 11 C -0.085 4.085 12 C -0.184 4.184 13 C -0.161 4.161 14 C 0.147 3.853 15 C -0.137 4.137 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.255 4.255 19 H 0.062 0.938 20 C 0.009 3.991 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.177 3.823 27 C -0.146 4.146 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.169 0.831 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.254 0.746 44 H 0.019 0.981 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 23.471 -0.726 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.334 5.334 3 C 0.374 3.626 4 O -0.426 6.426 5 C -0.220 4.220 6 C -0.191 4.191 7 C -0.146 4.146 8 N -0.150 5.150 9 H 0.248 0.752 10 C 0.004 3.996 11 C -0.104 4.104 12 C -0.221 4.221 13 C -0.199 4.199 14 C 0.045 3.955 15 C -0.177 4.177 16 C 0.021 3.979 17 N -0.316 5.316 18 C -0.385 4.385 19 H 0.079 0.921 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.050 3.950 27 C -0.186 4.186 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.165 0.835 32 H 0.186 0.814 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.400 23.455 -0.603 24.320 hybrid contribution -0.553 -0.497 0.172 0.763 sum -6.953 22.958 -0.431 23.992 Atomic orbital electron populations 1.21847 0.80327 1.03112 1.01032 1.47940 1.06844 1.05997 1.72609 1.17453 0.86404 0.82742 0.75953 1.90755 1.13861 1.87349 1.50665 1.20140 0.98782 0.95054 1.08070 1.22139 0.96394 0.96011 1.04540 1.21689 0.95412 0.97202 1.00263 1.41433 1.18241 1.15069 1.40228 0.75192 1.19152 0.91273 0.88622 1.00563 1.20605 0.93557 0.95827 1.00370 1.23041 1.03083 0.99992 0.95958 1.23016 0.97823 1.00831 0.98194 1.21153 0.97246 0.80981 0.96136 1.22355 1.01197 0.97975 0.96174 1.20892 0.95766 0.90904 0.90336 1.43987 1.77934 1.10317 0.99343 1.19119 1.19781 0.85403 1.14204 0.92058 1.25346 0.96608 0.97779 0.99260 1.69935 1.31667 1.34545 1.18531 0.86288 0.78503 0.85031 0.76879 1.21292 1.21658 1.20439 1.20755 0.95174 0.88475 0.90566 1.22595 1.01532 0.99061 0.95425 0.93231 0.90881 0.91064 0.83482 0.81421 0.85089 0.89421 0.87755 0.87713 0.88830 0.88827 0.92262 0.93054 0.96269 0.92580 0.93548 0.96262 0.89259 0.93263 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 8.17 59.85 0.49 1.53 16 2 N -0.60 -9.92 2.76 -175.22 -0.48 -10.40 16 3 C 0.59 10.13 7.41 -12.60 -0.09 10.04 16 4 O -0.55 -11.27 15.74 5.25 0.08 -11.19 16 5 C -0.21 -2.94 5.39 -103.35 -0.56 -3.49 16 6 C -0.17 -1.80 8.83 -37.50 -0.33 -2.13 16 7 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 8 N -0.55 -4.64 5.80 -9.11 -0.05 -4.69 16 9 H 0.41 2.18 7.84 -40.82 -0.32 1.86 16 10 C 0.12 1.42 6.69 -81.88 -0.55 0.87 16 11 C -0.08 -0.94 5.63 -91.77 -0.52 -1.46 16 12 C -0.18 -1.41 10.13 -26.69 -0.27 -1.68 16 13 C -0.16 -1.46 10.24 -26.69 -0.27 -1.74 16 14 C 0.15 2.79 2.47 -67.89 -0.17 2.62 16 15 C -0.14 -2.56 5.34 -26.61 -0.14 -2.70 16 16 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 17 N -0.59 -15.17 2.97 -172.32 -0.51 -15.69 16 18 C -0.26 -7.06 9.54 -15.06 -0.14 -7.20 16 19 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 20 C 0.01 0.26 5.20 -17.43 -0.09 0.17 16 21 N -0.90 -26.40 11.01 55.49 0.61 -25.79 16 22 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.18 4.34 5.21 -3.71 -0.02 4.32 16 27 C -0.15 -2.93 5.32 -26.61 -0.14 -3.07 16 28 H 0.05 0.57 7.41 -51.93 -0.38 0.18 16 29 H 0.07 0.98 6.47 -51.93 -0.34 0.64 16 30 H 0.07 0.83 5.97 -51.93 -0.31 0.52 16 31 H 0.15 1.39 6.69 -52.49 -0.35 1.04 16 32 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.13 1.74 7.87 -51.93 -0.41 1.33 16 34 H 0.09 0.51 7.08 -51.93 -0.37 0.14 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 2.01 6.91 -51.92 -0.36 1.66 16 39 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.09 2.42 6.26 -51.93 -0.33 2.10 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.11 6.72 -51.93 -0.35 0.77 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -33.27 369.19 -10.10 -43.37 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.25 Total: 3.17 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -3.03 Total: -1.05 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.44 Total: -56.57 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.27 -10.10 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005893877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.841 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds