Wall clock time and date at job start Tue Mar 31 2020 11:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00211 * 2 1 4 4 O 1.21627 * 119.99606 * 185.40198 * 3 2 1 5 5 C 1.47259 * 120.00143 * 5.39366 * 3 2 1 6 6 C 1.46692 * 126.93959 * 320.05240 * 5 3 2 7 7 C 1.34486 * 106.32833 * 179.75086 * 6 5 3 8 8 N 1.36451 * 108.86027 * 0.22789 * 7 6 5 9 9 H 0.96995 * 124.85453 * 179.97438 * 8 7 6 10 10 C 1.34655 * 110.29401 * 359.97438 * 8 7 6 11 11 C 1.50705 * 125.80040 * 179.97438 * 10 8 7 12 12 C 1.53000 * 117.49803 * 8.78045 * 11 10 8 13 13 C 1.53000 * 117.50107 * 300.11472 * 11 10 8 14 14 C 1.46503 * 119.99521 * 179.97438 * 2 1 3 15 15 C 1.53035 * 109.46116 * 60.02877 * 14 2 1 16 16 C 1.53200 * 109.31493 * 178.59775 * 15 14 2 17 17 N 1.46923 * 108.76203 * 54.65295 * 16 15 14 18 18 C 1.36937 * 120.62881 * 126.40722 * 17 16 15 19 19 H 1.07995 * 120.00196 * 323.31469 * 18 17 16 20 20 C 1.38815 * 119.99840 * 143.31548 * 18 17 16 21 21 N 1.31614 * 120.00122 * 357.64829 * 20 18 17 22 22 Si 1.86801 * 119.99855 * 177.64884 * 20 18 17 23 23 H 1.48496 * 109.47208 * 89.99726 * 22 20 18 24 24 H 1.48502 * 109.46910 * 209.99908 * 22 20 18 25 25 H 1.48496 * 109.47170 * 329.99636 * 22 20 18 26 26 C 1.46925 * 118.74321 * 306.38610 * 17 16 15 27 27 C 1.53039 * 109.46293 * 299.96976 * 14 2 1 28 28 H 1.08998 * 109.47594 * 84.33676 * 1 2 3 29 29 H 1.09002 * 109.47102 * 204.33950 * 1 2 3 30 30 H 1.09002 * 109.46876 * 324.33858 * 1 2 3 31 31 H 1.07995 * 126.83805 * 0.02562 * 6 5 3 32 32 H 1.07997 * 125.57244 * 180.20674 * 7 6 5 33 33 H 1.09003 * 115.54735 * 154.44323 * 11 10 8 34 34 H 1.09001 * 117.49806 * 359.97438 * 12 11 10 35 35 H 1.08994 * 117.50062 * 145.01983 * 12 11 10 36 36 H 1.08992 * 117.49932 * 214.97601 * 13 11 10 37 37 H 1.09003 * 117.49448 * 0.02562 * 13 11 10 38 38 H 1.09008 * 109.45526 * 179.97438 * 14 2 1 39 39 H 1.08998 * 109.49731 * 298.56309 * 15 14 2 40 40 H 1.09003 * 109.49878 * 58.65910 * 15 14 2 41 41 H 1.08997 * 109.59385 * 294.86943 * 16 15 14 42 42 H 1.08993 * 109.70137 * 174.50725 * 16 15 14 43 43 H 0.97004 * 119.99992 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.58575 * 293.82607 * 26 17 16 45 45 H 1.08993 * 109.70875 * 173.46303 * 26 17 16 46 46 H 1.08999 * 109.50006 * 301.34073 * 27 14 2 47 47 H 1.08996 * 109.49755 * 61.43806 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3511 1.1694 -0.0992 5 6 1.4076 2.4397 0.1199 6 6 0.1317 2.7865 -0.5156 7 6 -0.1578 4.0398 -0.1231 8 7 0.8386 4.4871 0.6948 9 1 0.8639 5.3637 1.1093 10 6 1.7817 3.5377 0.8444 11 6 3.0344 3.6623 1.6728 12 6 3.1662 4.8918 2.5738 13 6 4.0162 4.7769 1.3059 14 6 2.1974 -1.2688 0.0006 15 6 1.8280 -2.0713 -1.2490 16 6 2.6218 -3.3815 -1.2629 17 7 2.3848 -4.0911 0.0016 18 6 1.9517 -5.3901 0.0021 19 1 1.2511 -5.7261 -0.7480 20 6 2.4133 -6.2753 0.9667 21 7 3.3022 -5.8785 1.8525 22 14 1.7727 -8.0296 1.0075 23 1 2.6354 -8.8913 0.1600 24 1 1.7924 -8.5313 2.4051 25 1 0.3812 -8.0606 0.4900 26 6 2.6216 -3.3805 1.2657 27 6 1.8280 -2.0702 1.2509 28 1 -0.3634 0.1014 -1.0226 29 1 -0.3633 -0.9363 0.4236 30 1 -0.3633 0.8350 0.5991 31 1 -0.4598 2.1586 -1.1654 32 1 -1.0353 4.6007 -0.4089 33 1 3.4519 2.7238 2.0378 34 1 2.3470 5.6108 2.5670 35 1 3.6707 4.7624 3.5312 36 1 5.0795 4.5719 1.4298 37 1 3.7558 5.4203 0.4654 38 1 3.2691 -1.0694 0.0000 39 1 0.7608 -2.2925 -1.2371 40 1 2.0696 -1.4904 -2.1391 41 1 3.6849 -3.1637 -1.3659 42 1 2.2933 -4.0014 -2.0970 43 1 3.6250 -6.4971 2.5263 44 1 3.6846 -3.1627 1.3688 45 1 2.2923 -3.9977 2.1015 46 1 2.0697 -1.4885 2.1405 47 1 0.7608 -2.2914 1.2392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005893877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:17 Heat of formation + Delta-G solvation = 41.661019 kcal Electronic energy + Delta-G solvation = -27069.336902 eV Core-core repulsion = 23446.516490 eV Total energy + Delta-G solvation = -3622.820412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.33567 -40.68538 -38.79970 -37.80677 -36.44432 -34.32124 -32.42356 -31.65414 -31.04729 -30.08458 -27.88412 -27.01898 -24.83787 -23.84426 -23.48809 -23.36926 -22.42122 -21.41477 -20.56578 -19.45862 -18.75654 -18.63751 -17.47679 -16.98263 -16.64223 -16.44371 -15.98309 -15.60818 -15.35920 -15.17876 -15.03262 -14.84980 -14.52336 -14.28452 -14.19051 -14.05060 -13.74514 -13.28029 -13.21242 -12.94165 -12.87497 -12.74235 -12.70269 -12.51593 -12.49476 -12.06971 -11.95425 -11.90336 -11.70876 -11.49623 -11.40475 -11.32415 -10.81485 -10.56921 -9.70089 -9.51433 -8.98592 -8.57153 -7.87154 -5.45085 0.82596 1.48317 1.49380 1.58864 1.58986 1.98807 2.30334 2.45732 2.50769 2.93563 3.30767 3.53838 3.66036 3.76353 3.82236 4.02447 4.06019 4.10418 4.22478 4.32188 4.34095 4.40461 4.47792 4.57444 4.65777 4.66359 4.74788 4.78076 4.85833 4.88673 4.94096 4.99464 5.05306 5.06844 5.11159 5.12440 5.15719 5.21360 5.31116 5.47655 5.65292 5.68787 5.71188 5.82076 6.03155 6.44494 6.56044 6.69365 7.16628 7.31775 7.81971 8.40322 9.19360 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024492 B = 0.002905 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.976657 B = 9634.677537 C =10123.511085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.603 5.603 3 C 0.579 3.421 4 O -0.596 6.596 5 C -0.251 4.251 6 C -0.185 4.185 7 C 0.007 3.993 8 N -0.537 5.537 9 H 0.429 0.571 10 C 0.119 3.881 11 C -0.118 4.118 12 C -0.153 4.153 13 C -0.163 4.163 14 C 0.156 3.844 15 C -0.120 4.120 16 C 0.145 3.855 17 N -0.609 5.609 18 C -0.267 4.267 19 H 0.068 0.932 20 C -0.046 4.046 21 N -0.937 5.937 22 Si 0.973 3.027 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.265 1.265 26 C 0.186 3.814 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.213 0.787 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.005 0.995 42 H 0.064 0.936 43 H 0.251 0.749 44 H -0.013 1.013 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 25.940 -1.376 27.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.333 5.333 3 C 0.371 3.629 4 O -0.478 6.478 5 C -0.261 4.261 6 C -0.209 4.209 7 C -0.121 4.121 8 N -0.134 5.134 9 H 0.269 0.731 10 C 0.001 3.999 11 C -0.137 4.137 12 C -0.190 4.190 13 C -0.200 4.200 14 C 0.053 3.947 15 C -0.159 4.159 16 C 0.019 3.981 17 N -0.333 5.333 18 C -0.397 4.397 19 H 0.086 0.914 20 C -0.241 4.241 21 N -0.582 5.582 22 Si 0.800 3.200 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.190 1.190 26 C 0.060 3.940 27 C -0.167 4.167 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.176 0.824 32 H 0.230 0.770 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.006 0.994 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.581 25.968 -1.268 27.708 hybrid contribution 0.466 -1.188 0.369 1.329 sum -9.115 24.780 -0.900 26.418 Atomic orbital electron populations 1.22053 0.77774 1.03640 1.02762 1.47901 1.08266 1.04714 1.72410 1.18077 0.86073 0.84010 0.74788 1.90715 1.16118 1.88095 1.52892 1.20048 1.00820 0.94200 1.11013 1.22307 0.95439 0.97570 1.05538 1.22332 0.95579 0.96293 0.97890 1.41425 1.17204 1.15140 1.39642 0.73075 1.19131 0.91759 0.88927 1.00085 1.20485 0.94552 0.95690 1.03023 1.23170 1.02877 0.97548 0.95369 1.23078 0.97512 0.99773 0.99635 1.20757 0.95939 0.82365 0.95687 1.22145 1.01173 0.96096 0.96521 1.21001 0.95603 0.92370 0.89120 1.44222 1.78098 1.10405 1.00542 1.19485 1.19783 0.86321 1.14136 0.91412 1.26153 0.97096 1.01825 0.99064 1.70127 1.33192 1.35677 1.19198 0.85196 0.78437 0.79823 0.76501 1.21166 1.21939 1.18951 1.20476 0.93875 0.89994 0.89673 1.22311 1.01152 0.96830 0.96410 0.91074 0.91209 0.89372 0.82380 0.77030 0.88675 0.86609 0.87025 0.88157 0.87945 0.92108 0.90932 0.91495 0.97707 0.91721 0.94001 0.99447 0.92144 0.92919 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.91 8.17 127.77 1.04 2.96 16 2 N -0.60 -19.85 2.76 -826.51 -2.28 -22.14 16 3 C 0.58 20.60 7.41 86.62 0.64 21.24 16 4 O -0.60 -26.14 15.74 -4.12 -0.06 -26.20 16 5 C -0.25 -6.81 5.39 -19.04 -0.10 -6.91 16 6 C -0.18 -3.47 8.83 23.62 0.21 -3.26 16 7 C 0.01 0.08 11.89 83.12 0.99 1.07 16 8 N -0.54 -7.07 5.80 -182.72 -1.06 -8.13 16 9 H 0.43 2.60 7.84 -92.71 -0.73 1.87 16 10 C 0.12 2.67 6.69 41.78 0.28 2.95 16 11 C -0.12 -2.65 5.63 -11.54 -0.06 -2.72 16 12 C -0.15 -2.03 10.13 30.62 0.31 -1.72 16 13 C -0.16 -2.84 10.24 30.62 0.31 -2.52 16 14 C 0.16 6.10 2.47 45.02 0.11 6.21 16 15 C -0.12 -4.43 5.34 30.67 0.16 -4.27 16 16 C 0.15 6.49 6.52 86.37 0.56 7.05 16 17 N -0.61 -32.02 2.97 -699.11 -2.08 -34.10 16 18 C -0.27 -14.95 9.54 84.03 0.80 -14.15 16 19 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 20 C -0.05 -2.59 5.20 84.86 0.44 -2.15 16 21 N -0.94 -56.76 11.01 21.65 0.24 -56.52 16 22 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 C 0.19 9.62 5.21 86.36 0.45 10.07 16 27 C -0.13 -5.26 5.32 30.67 0.16 -5.09 16 28 H 0.07 1.42 7.41 -2.39 -0.02 1.40 16 29 H 0.07 1.73 6.47 -2.39 -0.02 1.71 16 30 H 0.09 1.85 5.97 -2.39 -0.01 1.84 16 31 H 0.16 2.48 6.69 -2.91 -0.02 2.46 16 32 H 0.21 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.10 2.79 7.87 -2.39 -0.02 2.77 16 34 H 0.12 0.87 7.08 -2.39 -0.02 0.86 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 2.79 6.91 -2.38 -0.02 2.78 16 39 H 0.07 2.53 7.72 -2.39 -0.02 2.51 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.06 2.74 7.93 -2.39 -0.02 2.72 16 43 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 44 H -0.01 -0.72 8.14 -2.39 -0.02 -0.73 16 45 H 0.06 3.46 6.26 -2.39 -0.01 3.44 16 46 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.07 2.67 6.72 -2.39 -0.02 2.65 16 Total: -1.00 -77.02 369.19 3.34 -73.67 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.25 Total: 17.47 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 6.31 Total: 8.75 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -5.18 Total: -120.89 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.06 Total: -26.20 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -77.02 3.34 -73.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005893877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.335 kcal (2) G-P(sol) polarization free energy of solvation -77.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds