Wall clock time and date at job start Tue Mar 31 2020 11:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 119.99624 * 2 1 4 4 O 1.21629 * 119.99767 * 185.85886 * 3 2 1 5 5 C 1.47262 * 120.00340 * 5.86502 * 3 2 1 6 6 C 1.36774 * 126.94200 * 8.14145 * 5 3 2 7 7 N 1.34656 * 108.39718 * 179.97438 * 6 5 3 8 8 H 0.96998 * 124.85073 * 179.97438 * 7 6 5 9 9 C 1.36447 * 110.29586 * 0.02562 * 7 6 5 10 10 C 1.34485 * 108.86221 * 359.74723 * 9 7 6 11 11 C 1.50692 * 126.83839 * 180.25200 * 10 9 7 12 12 C 1.53003 * 117.49856 * 8.90121 * 11 10 9 13 13 C 1.52997 * 117.50417 * 300.23869 * 11 10 9 14 14 C 1.46497 * 119.99795 * 180.02562 * 2 1 3 15 15 C 1.53344 * 109.42062 * 60.12871 * 14 2 1 16 16 C 1.53191 * 109.14977 * 178.67027 * 15 14 2 17 17 N 1.46924 * 108.89429 * 54.57918 * 16 15 14 18 18 C 1.36940 * 120.63404 * 126.29672 * 17 16 15 19 19 H 1.07994 * 119.99797 * 324.47892 * 18 17 16 20 20 C 1.38813 * 119.99934 * 144.48314 * 18 17 16 21 21 N 1.31619 * 120.00206 * 3.77860 * 20 18 17 22 22 Si 1.86801 * 119.99759 * 183.77885 * 20 18 17 23 23 H 1.48500 * 109.46984 * 89.99991 * 22 20 18 24 24 H 1.48500 * 109.46798 * 209.99630 * 22 20 18 25 25 H 1.48498 * 109.47169 * 329.99857 * 22 20 18 26 26 C 1.46934 * 118.73726 * 306.31946 * 17 16 15 27 27 C 1.53035 * 109.46151 * 299.99640 * 14 2 1 28 28 H 1.09000 * 109.47139 * 273.94915 * 1 2 3 29 29 H 1.09000 * 109.47160 * 33.95059 * 1 2 3 30 30 H 1.09000 * 109.46988 * 153.95348 * 1 2 3 31 31 H 1.08000 * 125.79940 * 359.97438 * 6 5 3 32 32 H 1.08005 * 125.56745 * 180.02562 * 9 7 6 33 33 H 1.09002 * 115.55453 * 154.56417 * 11 10 9 34 34 H 1.09000 * 117.50088 * 359.97438 * 12 11 10 35 35 H 1.09000 * 117.49834 * 145.02239 * 12 11 10 36 36 H 1.09001 * 117.50184 * 214.98219 * 13 11 10 37 37 H 1.09003 * 117.49342 * 359.97438 * 13 11 10 38 38 H 1.09003 * 109.45812 * 180.02562 * 14 2 1 39 39 H 1.09002 * 109.68475 * 58.70740 * 15 14 2 40 40 H 1.09000 * 109.47328 * 298.50657 * 15 14 2 41 41 H 1.08992 * 109.58781 * 294.71893 * 16 15 14 42 42 H 1.09000 * 109.58564 * 174.43347 * 16 15 14 43 43 H 0.96998 * 120.00133 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58458 * 173.39302 * 26 17 16 45 45 H 1.08990 * 109.58360 * 293.67912 * 26 17 16 46 46 H 1.09005 * 109.50019 * 61.44045 * 27 14 2 47 47 H 1.09000 * 109.49951 * 301.33855 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3504 1.1700 -0.1075 5 6 1.4083 2.4392 0.1303 6 6 0.0795 2.5988 0.4124 7 7 -0.1929 3.9172 0.4439 8 1 -1.0665 4.2985 0.6233 9 6 0.9354 4.6399 0.1863 10 6 1.9598 3.7911 -0.0110 11 6 3.3892 4.1561 -0.3185 12 6 3.7790 5.6321 -0.2164 13 6 3.6538 4.9662 -1.5891 14 6 2.1975 -1.2687 -0.0006 15 6 1.8286 -2.0699 -1.2550 16 6 2.6226 -3.3799 -1.2661 17 7 2.3850 -4.0910 -0.0026 18 6 1.9512 -5.3898 -0.0037 19 1 1.2650 -5.7292 -0.7654 20 6 2.3934 -6.2702 0.9742 21 7 3.1704 -5.8390 1.9452 22 14 1.8859 -8.0668 0.9121 23 1 2.8809 -8.8352 0.1217 24 1 1.8230 -8.6113 2.2922 25 1 0.5504 -8.1821 0.2730 26 6 2.6213 -3.3818 1.2624 27 6 1.8277 -2.0715 1.2487 28 1 -0.3633 0.0708 1.0252 29 1 -0.3633 0.8525 -0.5739 30 1 -0.3633 -0.9233 -0.4513 31 1 -0.6306 1.8027 0.5811 32 1 0.9969 5.7176 0.1513 33 1 4.1360 3.4171 -0.0281 34 1 3.0015 6.3392 0.0727 35 1 4.7824 5.8641 0.1406 36 1 4.5749 4.7604 -2.1345 37 1 2.7940 5.2348 -2.2028 38 1 3.2691 -1.0693 0.0000 39 1 2.0711 -1.4899 -2.1455 40 1 0.7614 -2.2914 -1.2439 41 1 3.6856 -3.1620 -1.3685 42 1 2.2944 -3.9990 -2.1010 43 1 3.4797 -6.4542 2.6283 44 1 2.2900 -4.0011 2.0959 45 1 3.6846 -3.1663 1.3673 46 1 0.7604 -2.2928 1.2363 47 1 2.0690 -1.4908 2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006217886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:21 Heat of formation + Delta-G solvation = 75.916287 kcal Electronic energy + Delta-G solvation = -26983.924708 eV Core-core repulsion = 23362.589716 eV Total energy + Delta-G solvation = -3621.334992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46082 -39.31440 -37.18659 -37.00474 -34.97911 -32.60653 -31.01587 -30.17763 -29.67970 -28.72797 -26.95904 -25.12429 -23.32445 -22.97879 -22.41308 -22.05558 -21.16956 -19.83268 -18.86940 -18.66460 -17.77919 -16.76347 -16.16135 -15.56068 -15.28803 -15.17347 -14.74901 -14.42914 -14.17185 -13.98207 -13.79105 -13.47515 -13.13745 -12.89911 -12.81152 -12.57423 -12.42262 -12.15579 -11.77801 -11.61435 -11.47618 -11.41161 -10.88263 -10.84869 -10.82384 -10.72780 -10.37313 -10.24793 -10.12548 -9.99254 -9.73618 -9.58754 -9.34234 -8.65855 -8.45295 -8.33626 -8.13200 -6.51698 -5.75720 -3.28806 1.75805 2.20497 3.01559 3.37592 3.40602 3.45251 3.45934 3.67085 4.01865 4.49963 4.55536 4.77330 4.84719 4.95983 4.99239 5.08404 5.19500 5.33201 5.41121 5.43166 5.50594 5.53619 5.61824 5.67082 5.72255 5.76466 5.80991 5.95143 5.98857 6.03729 6.18605 6.31744 6.35923 6.46685 6.59909 6.63581 6.71454 6.73898 6.77954 6.86880 7.03448 7.10886 7.26820 7.48348 7.78498 7.80643 7.87260 8.55980 8.62331 9.27755 9.86698 10.47243 11.30572 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028001 B = 0.002780 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.732436 B =10071.149504 C =10469.248858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.607 5.607 3 C 0.584 3.416 4 O -0.545 6.545 5 C -0.212 4.212 6 C 0.026 3.974 7 N -0.553 5.553 8 H 0.416 0.584 9 C -0.027 4.027 10 C -0.077 4.077 11 C -0.076 4.076 12 C -0.182 4.182 13 C -0.173 4.173 14 C 0.147 3.853 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.594 5.594 18 C -0.253 4.253 19 H 0.063 0.937 20 C 0.008 3.992 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.170 3.830 27 C -0.145 4.145 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.191 0.809 32 H 0.165 0.835 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.255 0.745 44 H 0.102 0.898 45 H 0.017 0.983 46 H 0.054 0.946 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 22.536 -3.322 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.338 5.338 3 C 0.374 3.626 4 O -0.423 6.423 5 C -0.223 4.223 6 C -0.109 4.109 7 N -0.147 5.147 8 H 0.252 0.748 9 C -0.154 4.154 10 C -0.084 4.084 11 C -0.094 4.094 12 C -0.219 4.219 13 C -0.210 4.210 14 C 0.046 3.954 15 C -0.178 4.178 16 C 0.021 3.979 17 N -0.317 5.317 18 C -0.383 4.383 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.044 3.956 27 C -0.185 4.185 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.207 0.793 32 H 0.182 0.818 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.120 0.880 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.982 22.483 -3.213 24.074 hybrid contribution -0.823 -0.731 0.137 1.109 sum -8.805 21.753 -3.076 23.668 Atomic orbital electron populations 1.22207 0.81254 1.03381 1.00990 1.47936 1.06345 1.06291 1.73276 1.17440 0.86664 0.82442 0.76103 1.90719 1.13822 1.87015 1.50765 1.20402 0.93140 0.93219 1.15514 1.23070 0.97442 0.85933 1.04420 1.41547 1.10900 1.06239 1.56029 0.74766 1.21436 0.85661 0.97184 1.11149 1.19635 0.93284 0.90622 1.04819 1.20433 0.93635 0.93932 1.01417 1.22992 1.02524 0.95462 1.00938 1.22984 1.03081 1.04229 0.90726 1.21228 0.97302 0.80799 0.96115 1.22423 1.01086 0.98095 0.96204 1.20883 0.95817 0.90895 0.90340 1.44028 1.77832 1.10451 0.99429 1.19142 1.20870 0.85388 1.12927 0.91914 1.25338 0.97270 0.97917 0.98494 1.69891 1.37188 1.33718 1.13973 0.86287 0.78127 0.85432 0.76884 1.21289 1.21701 1.20494 1.20944 0.95115 0.88584 0.90996 1.22594 1.01474 0.99126 0.95342 0.92728 0.90717 0.90440 0.79292 0.81805 0.85709 0.89209 0.88697 0.88712 0.89122 0.88738 0.92954 0.92304 0.96205 0.92620 0.93492 0.88048 0.96464 0.92706 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 7.76 59.85 0.46 1.21 16 2 N -0.61 -9.62 2.76 -175.03 -0.48 -10.10 16 3 C 0.58 10.02 7.66 -12.59 -0.10 9.92 16 4 O -0.54 -11.27 14.74 5.25 0.08 -11.19 16 5 C -0.21 -2.93 6.10 -103.35 -0.63 -3.56 16 6 C 0.03 0.25 9.82 -16.84 -0.17 0.09 16 7 N -0.55 -4.06 5.90 -12.85 -0.08 -4.14 16 8 H 0.42 1.47 8.96 -40.82 -0.37 1.10 16 9 C -0.03 -0.24 11.26 -16.83 -0.19 -0.43 16 10 C -0.08 -0.97 6.02 -102.54 -0.62 -1.59 16 11 C -0.08 -0.96 5.84 -91.78 -0.54 -1.49 16 12 C -0.18 -1.71 10.03 -26.69 -0.27 -1.98 16 13 C -0.17 -1.80 10.24 -26.69 -0.27 -2.07 16 14 C 0.15 2.76 2.48 -67.74 -0.17 2.59 16 15 C -0.14 -2.53 5.35 -26.45 -0.14 -2.67 16 16 C 0.15 3.20 6.50 -3.71 -0.02 3.17 16 17 N -0.59 -15.08 3.00 -172.32 -0.52 -15.59 16 18 C -0.25 -6.95 9.55 -15.06 -0.14 -7.09 16 19 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 20 C 0.01 0.24 5.31 -17.43 -0.09 0.14 16 21 N -0.90 -26.18 10.64 55.49 0.59 -25.59 16 22 Si 0.90 21.61 29.56 -169.99 -5.02 16.58 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.17 4.16 5.26 -3.70 -0.02 4.14 16 27 C -0.15 -2.89 5.34 -26.61 -0.14 -3.03 16 28 H 0.05 0.54 7.45 -51.93 -0.39 0.16 16 29 H 0.07 0.68 5.22 -51.93 -0.27 0.41 16 30 H 0.08 0.91 6.47 -51.93 -0.34 0.58 16 31 H 0.19 1.35 4.49 -52.49 -0.24 1.12 16 32 H 0.16 1.03 7.16 -52.48 -0.38 0.66 16 33 H 0.13 1.92 6.95 -51.93 -0.36 1.56 16 34 H 0.09 0.69 7.00 -51.93 -0.36 0.33 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 2.03 6.91 -51.93 -0.36 1.67 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.04 6.73 -51.93 -0.35 0.69 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.10 2.76 5.94 -51.93 -0.31 2.45 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 1.06 7.72 -51.93 -0.40 0.66 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -33.73 364.51 -10.01 -43.74 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.03 Total: 3.45 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.04 Total: -2.65 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.49 Total: -55.43 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.73 -10.01 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006217886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.656 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds