Wall clock time and date at job start Tue Mar 31 2020 11:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 119.99624 * 2 1 4 4 O 1.21629 * 119.99767 * 185.85886 * 3 2 1 5 5 C 1.47262 * 120.00340 * 5.86502 * 3 2 1 6 6 C 1.36774 * 126.94200 * 8.14145 * 5 3 2 7 7 N 1.34656 * 108.39718 * 179.97438 * 6 5 3 8 8 H 0.96998 * 124.85073 * 179.97438 * 7 6 5 9 9 C 1.36447 * 110.29586 * 0.02562 * 7 6 5 10 10 C 1.34485 * 108.86221 * 359.74723 * 9 7 6 11 11 C 1.50692 * 126.83839 * 180.25200 * 10 9 7 12 12 C 1.53003 * 117.49856 * 8.90121 * 11 10 9 13 13 C 1.52997 * 117.50417 * 300.23869 * 11 10 9 14 14 C 1.46497 * 119.99795 * 180.02562 * 2 1 3 15 15 C 1.53344 * 109.42062 * 60.12871 * 14 2 1 16 16 C 1.53191 * 109.14977 * 178.67027 * 15 14 2 17 17 N 1.46924 * 108.89429 * 54.57918 * 16 15 14 18 18 C 1.36940 * 120.63404 * 126.29672 * 17 16 15 19 19 H 1.07994 * 119.99797 * 324.47892 * 18 17 16 20 20 C 1.38813 * 119.99934 * 144.48314 * 18 17 16 21 21 N 1.31619 * 120.00206 * 3.77860 * 20 18 17 22 22 Si 1.86801 * 119.99759 * 183.77885 * 20 18 17 23 23 H 1.48500 * 109.46984 * 89.99991 * 22 20 18 24 24 H 1.48500 * 109.46798 * 209.99630 * 22 20 18 25 25 H 1.48498 * 109.47169 * 329.99857 * 22 20 18 26 26 C 1.46934 * 118.73726 * 306.31946 * 17 16 15 27 27 C 1.53035 * 109.46151 * 299.99640 * 14 2 1 28 28 H 1.09000 * 109.47139 * 273.94915 * 1 2 3 29 29 H 1.09000 * 109.47160 * 33.95059 * 1 2 3 30 30 H 1.09000 * 109.46988 * 153.95348 * 1 2 3 31 31 H 1.08000 * 125.79940 * 359.97438 * 6 5 3 32 32 H 1.08005 * 125.56745 * 180.02562 * 9 7 6 33 33 H 1.09002 * 115.55453 * 154.56417 * 11 10 9 34 34 H 1.09000 * 117.50088 * 359.97438 * 12 11 10 35 35 H 1.09000 * 117.49834 * 145.02239 * 12 11 10 36 36 H 1.09001 * 117.50184 * 214.98219 * 13 11 10 37 37 H 1.09003 * 117.49342 * 359.97438 * 13 11 10 38 38 H 1.09003 * 109.45812 * 180.02562 * 14 2 1 39 39 H 1.09002 * 109.68475 * 58.70740 * 15 14 2 40 40 H 1.09000 * 109.47328 * 298.50657 * 15 14 2 41 41 H 1.08992 * 109.58781 * 294.71893 * 16 15 14 42 42 H 1.09000 * 109.58564 * 174.43347 * 16 15 14 43 43 H 0.96998 * 120.00133 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58458 * 173.39302 * 26 17 16 45 45 H 1.08990 * 109.58360 * 293.67912 * 26 17 16 46 46 H 1.09005 * 109.50019 * 61.44045 * 27 14 2 47 47 H 1.09000 * 109.49951 * 301.33855 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3504 1.1700 -0.1075 5 6 1.4083 2.4392 0.1303 6 6 0.0795 2.5988 0.4124 7 7 -0.1929 3.9172 0.4439 8 1 -1.0665 4.2985 0.6233 9 6 0.9354 4.6399 0.1863 10 6 1.9598 3.7911 -0.0110 11 6 3.3892 4.1561 -0.3185 12 6 3.7790 5.6321 -0.2164 13 6 3.6538 4.9662 -1.5891 14 6 2.1975 -1.2687 -0.0006 15 6 1.8286 -2.0699 -1.2550 16 6 2.6226 -3.3799 -1.2661 17 7 2.3850 -4.0910 -0.0026 18 6 1.9512 -5.3898 -0.0037 19 1 1.2650 -5.7292 -0.7654 20 6 2.3934 -6.2702 0.9742 21 7 3.1704 -5.8390 1.9452 22 14 1.8859 -8.0668 0.9121 23 1 2.8809 -8.8352 0.1217 24 1 1.8230 -8.6113 2.2922 25 1 0.5504 -8.1821 0.2730 26 6 2.6213 -3.3818 1.2624 27 6 1.8277 -2.0715 1.2487 28 1 -0.3633 0.0708 1.0252 29 1 -0.3633 0.8525 -0.5739 30 1 -0.3633 -0.9233 -0.4513 31 1 -0.6306 1.8027 0.5811 32 1 0.9969 5.7176 0.1513 33 1 4.1360 3.4171 -0.0281 34 1 3.0015 6.3392 0.0727 35 1 4.7824 5.8641 0.1406 36 1 4.5749 4.7604 -2.1345 37 1 2.7940 5.2348 -2.2028 38 1 3.2691 -1.0693 0.0000 39 1 2.0711 -1.4899 -2.1455 40 1 0.7614 -2.2914 -1.2439 41 1 3.6856 -3.1620 -1.3685 42 1 2.2944 -3.9990 -2.1010 43 1 3.4797 -6.4542 2.6283 44 1 2.2900 -4.0011 2.0959 45 1 3.6846 -3.1663 1.3673 46 1 0.7604 -2.2928 1.2363 47 1 2.0690 -1.4908 2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006217886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:21 Heat of formation + Delta-G solvation = 55.110487 kcal Electronic energy + Delta-G solvation = -26984.826915 eV Core-core repulsion = 23362.589716 eV Total energy + Delta-G solvation = -3622.237199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.27958 -40.61833 -38.76581 -37.88886 -36.47841 -34.37930 -32.35892 -31.61284 -31.19730 -29.83157 -28.01222 -26.96504 -24.50049 -24.04599 -23.82273 -23.19369 -22.59147 -20.79647 -20.55945 -19.51190 -18.75170 -18.66275 -17.41688 -16.98697 -16.55913 -16.33646 -16.12033 -15.56323 -15.32990 -15.18920 -15.01712 -14.85088 -14.75317 -14.28478 -14.15850 -14.08483 -13.83533 -13.29335 -13.17112 -12.79481 -12.75094 -12.66030 -12.52419 -12.39836 -12.29956 -12.03984 -11.94082 -11.87608 -11.65382 -11.47770 -11.31458 -11.22663 -10.69534 -10.54647 -9.64950 -9.36357 -9.06519 -8.58311 -7.85891 -5.43333 0.82336 1.44073 1.48151 1.50233 1.58810 2.07671 2.49531 2.50642 2.55439 3.17936 3.30382 3.67075 3.76185 3.79419 4.00791 4.08970 4.11729 4.22665 4.24495 4.29137 4.33321 4.38070 4.48489 4.60294 4.63377 4.67591 4.75822 4.79575 4.85485 4.89690 4.91785 5.00198 5.06975 5.08577 5.16541 5.18342 5.29150 5.30858 5.42261 5.51809 5.65016 5.68665 5.78211 5.81572 5.99328 6.45961 6.60925 6.74218 7.17295 7.38273 7.83147 8.40031 9.18857 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028001 B = 0.002780 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.732436 B =10071.149504 C =10469.248858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.606 5.606 3 C 0.574 3.426 4 O -0.599 6.599 5 C -0.262 4.262 6 C 0.055 3.945 7 N -0.530 5.530 8 H 0.440 0.560 9 C -0.006 4.006 10 C -0.113 4.113 11 C -0.106 4.106 12 C -0.157 4.157 13 C -0.172 4.172 14 C 0.157 3.843 15 C -0.121 4.121 16 C 0.144 3.856 17 N -0.610 5.610 18 C -0.265 4.265 19 H 0.071 0.929 20 C -0.047 4.047 21 N -0.936 5.936 22 Si 0.972 3.028 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.264 1.264 26 C 0.178 3.822 27 C -0.125 4.125 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.219 0.781 32 H 0.199 0.801 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.004 0.996 42 H 0.064 0.936 43 H 0.251 0.749 44 H 0.073 0.927 45 H -0.017 1.017 46 H 0.069 0.931 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.485 24.756 -3.934 28.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.337 5.337 3 C 0.367 3.633 4 O -0.482 6.482 5 C -0.272 4.272 6 C -0.083 4.083 7 N -0.126 5.126 8 H 0.281 0.719 9 C -0.134 4.134 10 C -0.119 4.119 11 C -0.125 4.125 12 C -0.194 4.194 13 C -0.209 4.209 14 C 0.053 3.947 15 C -0.160 4.160 16 C 0.018 3.982 17 N -0.334 5.334 18 C -0.395 4.395 19 H 0.088 0.912 20 C -0.242 4.242 21 N -0.582 5.582 22 Si 0.800 3.200 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.189 1.189 26 C 0.052 3.948 27 C -0.165 4.165 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.235 0.765 32 H 0.216 0.784 33 H 0.098 0.902 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.022 0.978 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.001 0.999 46 H 0.088 0.912 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.959 24.747 -3.842 27.752 hybrid contribution 0.418 -1.361 0.317 1.458 sum -11.541 23.386 -3.525 26.316 Atomic orbital electron populations 1.22561 0.78109 1.04810 1.03024 1.47873 1.08154 1.04662 1.72998 1.18097 0.86345 0.83805 0.75086 1.90686 1.16336 1.87804 1.53370 1.20282 0.95110 0.92006 1.19787 1.23291 0.95993 0.87453 1.01545 1.41572 1.11700 1.05360 1.53964 0.71917 1.21788 0.84835 0.98260 1.08514 1.19817 0.93928 0.91098 1.07050 1.20269 0.93525 0.94887 1.03868 1.23098 1.03457 0.93487 0.99375 1.23033 1.03271 1.03688 0.90879 1.20794 0.95847 0.82354 0.95678 1.22212 1.01268 0.96088 0.96464 1.20997 0.95596 0.92452 0.89134 1.44253 1.77982 1.10554 1.00596 1.19509 1.20858 0.86301 1.12787 0.91177 1.26135 0.97729 1.02058 0.98302 1.70100 1.38684 1.34782 1.14634 0.85201 0.78237 0.80045 0.76527 1.21401 1.21996 1.18879 1.20660 0.93711 0.90277 0.90180 1.22297 1.01226 0.96752 0.96265 0.90494 0.87841 0.90284 0.76514 0.78439 0.90247 0.86498 0.88404 0.89326 0.87884 0.92512 0.91596 0.90596 0.97832 0.91703 0.94004 0.90883 0.99925 0.91207 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 7.76 127.77 0.99 2.10 16 2 N -0.61 -18.91 2.76 -825.93 -2.28 -21.19 16 3 C 0.57 20.23 7.66 86.62 0.66 20.90 16 4 O -0.60 -26.87 14.74 -4.12 -0.06 -26.93 16 5 C -0.26 -6.93 6.10 -19.04 -0.12 -7.05 16 6 C 0.05 0.84 9.82 83.92 0.82 1.67 16 7 N -0.53 -5.23 5.90 -194.55 -1.15 -6.38 16 8 H 0.44 0.52 8.96 -92.71 -0.83 -0.31 16 9 C -0.01 -0.08 11.26 83.12 0.94 0.86 16 10 C -0.11 -2.73 6.02 -18.52 -0.11 -2.84 16 11 C -0.11 -2.79 5.84 -11.54 -0.07 -2.85 16 12 C -0.16 -2.74 10.03 30.62 0.31 -2.43 16 13 C -0.17 -3.50 10.24 30.62 0.31 -3.19 16 14 C 0.16 6.01 2.48 45.12 0.11 6.12 16 15 C -0.12 -4.37 5.35 30.77 0.16 -4.20 16 16 C 0.14 6.37 6.50 86.36 0.56 6.93 16 17 N -0.61 -31.73 3.00 -699.11 -2.10 -33.83 16 18 C -0.26 -14.63 9.55 84.03 0.80 -13.83 16 19 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 20 C -0.05 -2.64 5.31 84.86 0.45 -2.19 16 21 N -0.94 -56.22 10.64 21.65 0.23 -55.99 16 22 Si 0.97 44.83 29.56 68.60 2.03 46.86 16 23 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.18 9.15 5.26 86.36 0.45 9.61 16 27 C -0.13 -5.08 5.34 30.67 0.16 -4.92 16 28 H 0.08 1.21 7.45 -2.39 -0.02 1.19 16 29 H 0.10 1.45 5.22 -2.39 -0.01 1.44 16 30 H 0.08 1.57 6.47 -2.39 -0.02 1.56 16 31 H 0.22 1.98 4.49 -2.91 -0.01 1.97 16 32 H 0.20 1.41 7.16 -2.91 -0.02 1.39 16 33 H 0.08 2.76 6.95 -2.39 -0.02 2.74 16 34 H 0.12 1.37 7.00 -2.39 -0.02 1.35 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 2.62 6.91 -2.39 -0.02 2.60 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.08 2.52 6.73 -2.39 -0.02 2.50 16 41 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.06 2.70 7.93 -2.39 -0.02 2.68 16 43 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.07 4.17 5.94 -2.39 -0.01 4.16 16 45 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 46 H 0.07 2.63 7.72 -2.38 -0.02 2.61 16 47 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -80.20 364.51 3.28 -76.92 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.16 Total: 15.87 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 6.45 Total: 4.68 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -5.29 Total: -117.39 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.06 Total: -26.93 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -80.20 3.28 -76.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006217886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.026 kcal (2) G-P(sol) polarization free energy of solvation -80.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds