Wall clock time and date at job start Tue Mar 31 2020 11:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99910 * 2 1 4 4 C 1.39707 * 119.99899 * 180.02562 * 2 1 3 5 5 C 1.39025 * 120.00306 * 359.97438 * 4 2 1 6 6 C 1.38205 * 120.21848 * 179.97438 * 5 4 2 7 7 C 1.38026 * 120.22808 * 0.02562 * 6 5 4 8 8 C 1.39582 * 120.00344 * 359.97438 * 7 6 5 9 9 C 1.47860 * 120.10767 * 180.02562 * 8 7 6 10 10 O 1.21554 * 120.00240 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99883 * 359.97438 * 9 8 7 12 12 C 1.46506 * 119.99941 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.49326 * 325.00011 * 12 11 9 14 14 C 1.53033 * 109.49776 * 204.93499 * 12 11 9 15 15 C 1.53042 * 109.54048 * 178.71118 * 14 12 11 16 16 C 1.53190 * 109.33504 * 61.31893 * 15 14 12 17 17 N 1.46927 * 108.77533 * 305.38040 * 16 15 14 18 18 C 1.36943 * 120.62908 * 233.58905 * 17 16 15 19 19 H 1.08001 * 120.00076 * 27.69185 * 18 17 16 20 20 C 1.38816 * 119.99651 * 207.69152 * 18 17 16 21 21 N 1.31615 * 120.00027 * 17.36712 * 20 18 17 22 22 Si 1.86797 * 119.99569 * 197.36663 * 20 18 17 23 23 H 1.48499 * 109.47689 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46901 * 120.00167 * 22 20 18 25 25 H 1.48506 * 109.47083 * 239.99744 * 22 20 18 26 26 C 1.46928 * 118.74061 * 53.60870 * 17 16 15 27 27 C 1.38636 * 120.00482 * 179.97438 * 4 2 1 28 28 H 1.08994 * 109.47217 * 240.00278 * 1 2 3 29 29 H 1.09002 * 109.47200 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47291 * 119.99836 * 1 2 3 31 31 H 1.09000 * 109.46817 * 270.00108 * 3 2 1 32 32 H 1.08998 * 109.47269 * 29.99568 * 3 2 1 33 33 H 1.08998 * 109.47093 * 150.00095 * 3 2 1 34 34 H 1.07994 * 119.89003 * 359.70310 * 5 4 2 35 35 H 1.07993 * 119.88602 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.00038 * 179.97438 * 7 6 5 37 37 H 0.97002 * 120.00117 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46104 * 298.70299 * 14 12 11 39 39 H 1.09008 * 109.46079 * 58.66122 * 14 12 11 40 40 H 1.08996 * 109.47333 * 301.36451 * 15 14 12 41 41 H 1.08997 * 109.52453 * 181.29943 * 15 14 12 42 42 H 1.09007 * 109.58739 * 185.59594 * 16 15 14 43 43 H 1.09004 * 109.59175 * 65.17002 * 16 15 14 44 44 H 0.97007 * 119.99581 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58659 * 186.60149 * 26 17 16 46 46 H 1.09009 * 109.69991 * 66.25096 * 26 17 16 47 47 H 1.08000 * 120.11099 * 0.04620 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 1.4684 -2.4139 -0.0005 6 6 2.1549 -3.6134 -0.0016 7 6 3.5352 -3.6241 -0.0021 8 6 4.2425 -2.4208 -0.0022 9 6 5.7211 -2.4296 -0.0033 10 8 6.3351 -1.3806 -0.0038 11 7 6.3880 -3.6008 -0.0038 12 6 7.8530 -3.6095 -0.0044 13 1 8.2215 -2.7698 -0.5937 14 6 8.3558 -4.9205 -0.6131 15 6 9.8859 -4.9171 -0.6436 16 6 10.4215 -4.8110 0.7877 17 7 9.8281 -3.6294 1.4283 18 6 10.6230 -2.6777 2.0095 19 1 11.6292 -2.5212 1.6495 20 6 10.1355 -1.9142 3.0613 21 7 9.0699 -2.3111 3.7240 22 14 10.9920 -0.3235 3.5360 23 1 12.1569 -0.1025 2.6419 24 1 10.0421 0.8099 3.3998 25 1 11.4574 -0.4128 4.9434 26 6 8.3656 -3.4885 1.4341 27 6 3.5499 -1.2101 -0.0011 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3791 1.5834 -1.0277 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 0.3885 -2.4119 0.0047 35 1 1.6096 -4.5455 -0.0012 36 1 4.0679 -4.5636 -0.0026 37 1 5.8980 -4.4380 -0.0038 38 1 8.0069 -5.7584 -0.0095 39 1 7.9721 -5.0201 -1.6285 40 1 10.2358 -4.0655 -1.2271 41 1 10.2432 -5.8410 -1.0982 42 1 11.5065 -4.7082 0.7651 43 1 10.1488 -5.7058 1.3472 44 1 8.7291 -1.7772 4.4588 45 1 8.0940 -2.5133 1.8381 46 1 7.9232 -4.2740 2.0469 47 1 4.0918 -0.2758 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009323886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:37 Heat of formation + Delta-G solvation = 23.804681 kcal Electronic energy + Delta-G solvation = -26745.116922 eV Core-core repulsion = 23121.522201 eV Total energy + Delta-G solvation = -3623.594721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.10184 -38.85129 -37.21719 -36.08996 -34.08364 -32.64745 -31.30815 -30.34623 -29.91382 -28.74908 -28.16010 -25.22021 -24.90352 -23.70910 -22.13001 -21.50954 -21.34535 -19.72499 -19.26451 -17.91410 -16.72119 -16.12727 -15.94548 -15.62788 -15.26031 -15.20416 -14.85361 -14.24861 -14.06086 -13.91622 -13.64908 -13.59849 -13.37507 -12.98774 -12.86133 -12.47900 -12.47012 -12.29197 -12.27531 -12.20119 -11.83068 -11.64999 -11.05342 -10.97592 -10.71299 -10.68092 -10.43229 -10.18564 -9.96852 -9.93453 -9.89001 -9.47801 -9.35452 -8.92140 -8.44996 -8.38216 -7.42503 -6.60866 -5.70600 -3.13717 1.03248 1.53227 2.93799 3.23398 3.45362 3.53416 3.54966 3.61695 4.10188 4.58224 4.75640 4.76916 4.87668 5.02711 5.08226 5.19765 5.23848 5.38896 5.39729 5.41256 5.45431 5.49703 5.58011 5.61624 5.62671 5.68514 5.75732 5.87317 6.12962 6.17044 6.19409 6.37949 6.40635 6.45888 6.48486 6.55494 6.68846 6.75268 6.81893 6.99602 7.02429 7.08028 7.33682 7.36474 7.78993 7.88410 8.01736 8.52909 8.71930 9.27911 9.92156 10.46912 11.37293 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.003562 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.734059 B = 7858.204804 C = 9319.189929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.640 5.640 3 C 0.090 3.910 4 C 0.203 3.797 5 C -0.178 4.178 6 C -0.081 4.081 7 C -0.145 4.145 8 C -0.077 4.077 9 C 0.551 3.449 10 O -0.530 6.530 11 N -0.714 5.714 12 C 0.117 3.883 13 H 0.082 0.918 14 C -0.116 4.116 15 C -0.131 4.131 16 C 0.142 3.858 17 N -0.589 5.589 18 C -0.256 4.256 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.898 5.898 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.291 1.291 26 C 0.167 3.833 27 C -0.137 4.137 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.392 0.608 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.253 0.747 45 H 0.095 0.905 46 H 0.017 0.983 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.925 -1.831 -9.808 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.353 5.353 3 C -0.053 4.053 4 C 0.102 3.898 5 C -0.201 4.201 6 C -0.100 4.100 7 C -0.166 4.166 8 C -0.081 4.081 9 C 0.338 3.662 10 O -0.407 6.407 11 N -0.365 5.365 12 C 0.012 3.988 13 H 0.100 0.900 14 C -0.154 4.154 15 C -0.171 4.171 16 C 0.016 3.984 17 N -0.312 5.312 18 C -0.385 4.385 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.542 5.542 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.218 1.218 26 C 0.040 3.960 27 C -0.160 4.160 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.226 0.774 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.113 0.887 46 H 0.035 0.965 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.600 -0.807 -9.652 20.089 hybrid contribution -0.023 0.391 0.372 0.540 sum -17.622 -0.416 -9.281 19.921 Atomic orbital electron populations 1.21567 0.79579 1.02321 1.01017 1.46292 1.04850 1.03166 1.80979 1.21714 0.97676 0.84578 1.01329 1.17686 0.90857 0.85885 0.95376 1.20741 0.99530 0.91073 1.08722 1.20780 0.93807 0.97312 0.98093 1.21070 0.94340 0.96904 1.04250 1.19829 0.93079 0.93692 1.01462 1.18234 0.86793 0.84252 0.76969 1.90797 1.69301 1.31480 1.49077 1.45992 1.08107 1.07713 1.74639 1.21983 0.77085 0.97848 1.01914 0.89961 1.21678 0.97081 0.97230 0.99429 1.21999 0.94388 1.00602 1.00069 1.20959 0.96763 0.90221 0.90481 1.43982 1.01480 1.20601 1.65093 1.19187 0.97466 1.11553 1.10308 0.91566 1.25028 0.98343 1.00208 0.95718 1.70030 1.25463 1.37440 1.21282 0.86249 0.78933 0.84023 0.77719 1.20199 1.21452 1.21788 1.21088 0.83174 1.02638 0.89110 1.20796 0.91666 0.98589 1.04993 0.92891 0.90966 0.92934 0.93313 0.91566 0.90807 0.86061 0.85695 0.85943 0.77355 0.92257 0.93063 0.92124 0.92637 0.92639 0.96416 0.93734 0.88710 0.96493 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 9.40 59.85 0.56 1.27 16 2 N -0.64 -6.76 3.41 -187.59 -0.64 -7.40 16 3 C 0.09 0.85 10.16 59.85 0.61 1.46 16 4 C 0.20 2.57 6.55 -83.83 -0.55 2.02 16 5 C -0.18 -1.95 9.31 -39.30 -0.37 -2.32 16 6 C -0.08 -0.87 10.02 -39.67 -0.40 -1.27 16 7 C -0.14 -1.82 9.54 -39.16 -0.37 -2.19 16 8 C -0.08 -1.21 5.87 -104.99 -0.62 -1.83 16 9 C 0.55 10.57 7.74 -12.32 -0.10 10.48 16 10 O -0.53 -12.47 16.01 5.32 0.09 -12.39 16 11 N -0.71 -12.44 5.03 -54.63 -0.27 -12.72 16 12 C 0.12 2.36 2.60 -67.81 -0.18 2.19 16 13 H 0.08 1.89 7.58 -51.93 -0.39 1.49 16 14 C -0.12 -1.92 5.36 -26.69 -0.14 -2.06 16 15 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 16 C 0.14 3.00 6.52 -3.71 -0.02 2.98 16 17 N -0.59 -15.29 3.00 -172.31 -0.52 -15.80 16 18 C -0.26 -7.31 9.59 -15.05 -0.14 -7.46 16 19 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 20 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 21 N -0.90 -27.35 11.19 55.49 0.62 -26.73 16 22 Si 0.90 22.89 29.59 -169.99 -5.03 17.86 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C 0.17 4.19 4.89 -3.71 -0.02 4.17 16 27 C -0.14 -2.08 8.75 -38.97 -0.34 -2.42 16 28 H 0.05 0.36 7.94 -51.93 -0.41 -0.05 16 29 H 0.07 0.39 7.79 -51.93 -0.40 -0.01 16 30 H 0.05 0.34 7.95 -51.93 -0.41 -0.07 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 33 H 0.07 0.80 6.19 -51.93 -0.32 0.48 16 34 H 0.12 1.04 6.71 -52.49 -0.35 0.69 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.27 6.40 -52.49 -0.34 0.94 16 37 H 0.39 5.43 6.63 -40.82 -0.27 5.16 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.14 7.93 -51.92 -0.41 0.73 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.09 2.81 6.04 -51.93 -0.31 2.49 16 46 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 47 H 0.14 2.17 5.73 -52.49 -0.30 1.86 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -34.79 372.87 -9.73 -44.52 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.27 Total: 4.35 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.32 Total: 2.69 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.81 Total: -62.65 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.79 -9.73 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009323886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.322 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds