Wall clock time and date at job start Tue Mar 31 2020 11:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99910 * 2 1 4 4 C 1.39707 * 119.99899 * 180.02562 * 2 1 3 5 5 C 1.39025 * 120.00306 * 359.97438 * 4 2 1 6 6 C 1.38205 * 120.21848 * 179.97438 * 5 4 2 7 7 C 1.38026 * 120.22808 * 0.02562 * 6 5 4 8 8 C 1.39582 * 120.00344 * 359.97438 * 7 6 5 9 9 C 1.47860 * 120.10767 * 180.02562 * 8 7 6 10 10 O 1.21554 * 120.00240 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99883 * 359.97438 * 9 8 7 12 12 C 1.46506 * 119.99941 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.49326 * 325.00011 * 12 11 9 14 14 C 1.53033 * 109.49776 * 204.93499 * 12 11 9 15 15 C 1.53042 * 109.54048 * 178.71118 * 14 12 11 16 16 C 1.53190 * 109.33504 * 61.31893 * 15 14 12 17 17 N 1.46927 * 108.77533 * 305.38040 * 16 15 14 18 18 C 1.36943 * 120.62908 * 233.58905 * 17 16 15 19 19 H 1.08001 * 120.00076 * 27.69185 * 18 17 16 20 20 C 1.38816 * 119.99651 * 207.69152 * 18 17 16 21 21 N 1.31615 * 120.00027 * 17.36712 * 20 18 17 22 22 Si 1.86797 * 119.99569 * 197.36663 * 20 18 17 23 23 H 1.48499 * 109.47689 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46901 * 120.00167 * 22 20 18 25 25 H 1.48506 * 109.47083 * 239.99744 * 22 20 18 26 26 C 1.46928 * 118.74061 * 53.60870 * 17 16 15 27 27 C 1.38636 * 120.00482 * 179.97438 * 4 2 1 28 28 H 1.08994 * 109.47217 * 240.00278 * 1 2 3 29 29 H 1.09002 * 109.47200 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47291 * 119.99836 * 1 2 3 31 31 H 1.09000 * 109.46817 * 270.00108 * 3 2 1 32 32 H 1.08998 * 109.47269 * 29.99568 * 3 2 1 33 33 H 1.08998 * 109.47093 * 150.00095 * 3 2 1 34 34 H 1.07994 * 119.89003 * 359.70310 * 5 4 2 35 35 H 1.07993 * 119.88602 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.00038 * 179.97438 * 7 6 5 37 37 H 0.97002 * 120.00117 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46104 * 298.70299 * 14 12 11 39 39 H 1.09008 * 109.46079 * 58.66122 * 14 12 11 40 40 H 1.08996 * 109.47333 * 301.36451 * 15 14 12 41 41 H 1.08997 * 109.52453 * 181.29943 * 15 14 12 42 42 H 1.09007 * 109.58739 * 185.59594 * 16 15 14 43 43 H 1.09004 * 109.59175 * 65.17002 * 16 15 14 44 44 H 0.97007 * 119.99581 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58659 * 186.60149 * 26 17 16 46 46 H 1.09009 * 109.69991 * 66.25096 * 26 17 16 47 47 H 1.08000 * 120.11099 * 0.04620 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 1.4684 -2.4139 -0.0005 6 6 2.1549 -3.6134 -0.0016 7 6 3.5352 -3.6241 -0.0021 8 6 4.2425 -2.4208 -0.0022 9 6 5.7211 -2.4296 -0.0033 10 8 6.3351 -1.3806 -0.0038 11 7 6.3880 -3.6008 -0.0038 12 6 7.8530 -3.6095 -0.0044 13 1 8.2215 -2.7698 -0.5937 14 6 8.3558 -4.9205 -0.6131 15 6 9.8859 -4.9171 -0.6436 16 6 10.4215 -4.8110 0.7877 17 7 9.8281 -3.6294 1.4283 18 6 10.6230 -2.6777 2.0095 19 1 11.6292 -2.5212 1.6495 20 6 10.1355 -1.9142 3.0613 21 7 9.0699 -2.3111 3.7240 22 14 10.9920 -0.3235 3.5360 23 1 12.1569 -0.1025 2.6419 24 1 10.0421 0.8099 3.3998 25 1 11.4574 -0.4128 4.9434 26 6 8.3656 -3.4885 1.4341 27 6 3.5499 -1.2101 -0.0011 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3791 1.5834 -1.0277 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 0.3885 -2.4119 0.0047 35 1 1.6096 -4.5455 -0.0012 36 1 4.0679 -4.5636 -0.0026 37 1 5.8980 -4.4380 -0.0038 38 1 8.0069 -5.7584 -0.0095 39 1 7.9721 -5.0201 -1.6285 40 1 10.2358 -4.0655 -1.2271 41 1 10.2432 -5.8410 -1.0982 42 1 11.5065 -4.7082 0.7651 43 1 10.1488 -5.7058 1.3472 44 1 8.7291 -1.7772 4.4588 45 1 8.0940 -2.5133 1.8381 46 1 7.9232 -4.2740 2.0469 47 1 4.0918 -0.2758 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009323886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:37 Heat of formation + Delta-G solvation = 0.676051 kcal Electronic energy + Delta-G solvation = -26746.119855 eV Core-core repulsion = 23121.522201 eV Total energy + Delta-G solvation = -3624.597653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36503 -40.09725 -38.86058 -37.02101 -35.85214 -34.46903 -32.42155 -31.90432 -31.28464 -30.11811 -29.03616 -27.25922 -25.72340 -25.01893 -23.93570 -22.99886 -22.33905 -21.25666 -20.73789 -19.05052 -18.75370 -17.39777 -17.24255 -16.76247 -16.54160 -16.33027 -16.09145 -15.87292 -15.71853 -15.27856 -15.06034 -14.78523 -14.73747 -14.55031 -14.15856 -14.02601 -13.51590 -13.48486 -13.37575 -13.08628 -13.04126 -12.97431 -12.68577 -12.55803 -12.49691 -12.24356 -12.05428 -12.02421 -11.69933 -11.61552 -11.27677 -10.92137 -10.83798 -10.58396 -10.18022 -9.87415 -8.71241 -8.28327 -7.90984 -5.36609 -0.06682 0.58651 1.37999 1.42945 1.51564 1.92240 2.07739 2.29756 2.47870 2.98251 3.25408 3.63051 3.81445 3.92570 3.96026 4.10874 4.13724 4.19799 4.27021 4.32357 4.34349 4.47079 4.47867 4.59513 4.62476 4.71490 4.76054 4.81849 4.83059 4.89468 4.91739 4.96701 5.08650 5.19266 5.20506 5.25119 5.32612 5.41761 5.45171 5.51596 5.52562 5.60518 5.75703 5.82176 6.28509 6.34577 6.47406 6.61411 7.09648 7.28318 7.83513 8.32462 9.13833 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.003562 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.734059 B = 7858.204804 C = 9319.189929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.645 5.645 3 C 0.088 3.912 4 C 0.196 3.804 5 C -0.168 4.168 6 C -0.071 4.071 7 C -0.144 4.144 8 C -0.103 4.103 9 C 0.545 3.455 10 O -0.589 6.589 11 N -0.700 5.700 12 C 0.130 3.870 13 H 0.049 0.951 14 C -0.106 4.106 15 C -0.121 4.121 16 C 0.135 3.865 17 N -0.610 5.610 18 C -0.263 4.263 19 H 0.069 0.931 20 C -0.052 4.052 21 N -0.931 5.931 22 Si 0.961 3.039 23 H -0.262 1.262 24 H -0.300 1.300 25 H -0.284 1.284 26 C 0.180 3.820 27 C -0.166 4.166 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.413 0.587 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.024 0.976 44 H 0.246 0.754 45 H 0.040 0.960 46 H 0.001 0.999 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.164 -4.076 -11.392 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.357 5.357 3 C -0.055 4.055 4 C 0.094 3.906 5 C -0.191 4.191 6 C -0.090 4.090 7 C -0.165 4.165 8 C -0.106 4.106 9 C 0.334 3.666 10 O -0.470 6.470 11 N -0.351 5.351 12 C 0.024 3.976 13 H 0.067 0.933 14 C -0.144 4.144 15 C -0.161 4.161 16 C 0.010 3.990 17 N -0.334 5.334 18 C -0.394 4.394 19 H 0.087 0.913 20 C -0.248 4.248 21 N -0.577 5.577 22 Si 0.789 3.211 23 H -0.186 1.186 24 H -0.227 1.227 25 H -0.210 1.210 26 C 0.053 3.947 27 C -0.189 4.189 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.171 0.829 35 H 0.184 0.816 36 H 0.162 0.838 37 H 0.251 0.749 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.019 0.981 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.856 -3.105 -11.267 23.040 hybrid contribution 0.591 1.078 0.855 1.498 sum -19.265 -2.026 -10.411 21.992 Atomic orbital electron populations 1.21807 0.77237 1.04020 1.01885 1.46569 1.06309 1.02589 1.80271 1.21749 0.97152 0.85137 1.01511 1.17849 0.89971 0.87676 0.95141 1.21177 1.01119 0.90255 1.06536 1.21247 0.92960 0.98904 0.95860 1.21328 0.95485 0.96180 1.03463 1.19650 0.90734 0.95524 1.04729 1.18950 0.88549 0.83668 0.75471 1.90754 1.70864 1.33560 1.51869 1.45788 1.07096 1.08403 1.73841 1.21549 0.78582 0.99304 0.98176 0.93263 1.21653 0.96592 0.94859 1.01333 1.21904 0.94679 1.02434 0.97047 1.21201 0.96908 0.88326 0.92573 1.44269 1.01638 1.22046 1.65460 1.19548 0.97822 1.12204 1.09795 0.91284 1.25802 0.99405 1.03243 0.96301 1.70184 1.27154 1.38439 1.21907 0.85298 0.78064 0.79872 0.77856 1.18556 1.22737 1.21038 1.20760 0.83331 0.98888 0.91738 1.20730 0.93190 0.97606 1.07422 0.92074 0.89101 0.91753 0.93059 0.89054 0.93344 0.82867 0.81583 0.83774 0.74901 0.90434 0.89494 0.93126 0.88172 0.92542 0.95852 0.94479 0.94152 0.98143 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 9.40 127.77 1.20 2.27 16 2 N -0.65 -13.00 3.41 -747.41 -2.55 -15.55 16 3 C 0.09 1.70 10.16 127.77 1.30 2.99 16 4 C 0.20 4.85 6.55 38.17 0.25 5.10 16 5 C -0.17 -3.17 9.31 22.45 0.21 -2.96 16 6 C -0.07 -1.26 10.02 22.21 0.22 -1.04 16 7 C -0.14 -3.34 9.54 22.54 0.22 -3.12 16 8 C -0.10 -3.34 5.87 -20.10 -0.12 -3.46 16 9 C 0.54 22.22 7.74 86.79 0.67 22.89 16 10 O -0.59 -30.45 16.01 -3.89 -0.06 -30.52 16 11 N -0.70 -24.79 5.03 -445.03 -2.24 -27.03 16 12 C 0.13 5.37 2.60 45.06 0.12 5.49 16 13 H 0.05 2.37 7.58 -2.39 -0.02 2.35 16 14 C -0.11 -3.25 5.36 30.62 0.16 -3.08 16 15 C -0.12 -3.87 6.08 30.67 0.19 -3.69 16 16 C 0.13 5.58 6.52 86.36 0.56 6.14 16 17 N -0.61 -32.56 3.00 -699.07 -2.09 -34.66 16 18 C -0.26 -15.56 9.59 84.03 0.81 -14.75 16 19 H 0.07 3.94 7.89 -2.91 -0.02 3.91 16 20 C -0.05 -3.16 4.91 84.86 0.42 -2.74 16 21 N -0.93 -59.74 11.19 21.65 0.24 -59.50 16 22 Si 0.96 48.97 29.59 68.60 2.03 51.00 16 23 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 25 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 26 C 0.18 9.46 4.89 86.36 0.42 9.88 16 27 C -0.17 -5.34 8.75 22.67 0.20 -5.14 16 28 H 0.06 0.63 7.94 -2.39 -0.02 0.61 16 29 H 0.09 0.72 7.79 -2.39 -0.02 0.70 16 30 H 0.06 0.62 7.95 -2.39 -0.02 0.60 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.26 7.92 -2.39 -0.02 1.24 16 33 H 0.05 1.18 6.19 -2.39 -0.01 1.17 16 34 H 0.15 1.90 6.71 -2.91 -0.02 1.88 16 35 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 36 H 0.14 2.57 6.40 -2.91 -0.02 2.55 16 37 H 0.41 10.89 6.63 -92.71 -0.61 10.27 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.06 2.28 7.93 -2.38 -0.02 2.27 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 45 H 0.04 2.56 6.04 -2.39 -0.01 2.54 16 46 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 47 H 0.11 3.97 5.73 -2.91 -0.02 3.95 16 Total: -1.00 -83.66 372.87 2.51 -81.15 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.36 Total: 20.31 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 6.82 Total: 14.79 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -6.64 Total: -136.73 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.06 Total: -30.52 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Total: -83.66 2.51 -81.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009323886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.829 kcal (2) G-P(sol) polarization free energy of solvation -83.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds