Wall clock time and date at job start Tue Mar 31 2020 11:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00669 * 2 1 4 4 C 1.39053 * 119.99863 * 179.97438 * 2 1 3 5 5 C 1.39217 * 119.93027 * 354.16165 * 4 2 1 6 6 C 1.37609 * 120.07205 * 179.97438 * 5 4 2 7 7 C 1.39798 * 119.92866 * 359.97438 * 6 5 4 8 8 C 1.47520 * 120.07166 * 180.02562 * 7 6 5 9 9 O 1.21602 * 119.99802 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00449 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00100 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.52531 * 35.07882 * 11 10 8 13 13 C 1.53041 * 109.49520 * 155.16512 * 11 10 8 14 14 C 1.53038 * 109.53436 * 181.31473 * 13 11 10 15 15 C 1.53196 * 109.31523 * 298.63216 * 14 13 11 16 16 N 1.46927 * 108.77089 * 54.63557 * 15 14 13 17 17 C 1.36942 * 120.62763 * 126.41901 * 16 15 14 18 18 H 1.07998 * 119.99777 * 333.70034 * 17 16 15 19 19 C 1.38813 * 120.00288 * 153.70489 * 17 16 15 20 20 N 1.31613 * 120.00003 * 158.80882 * 19 17 16 21 21 Si 1.86805 * 119.99680 * 338.80914 * 19 17 16 22 22 H 1.48499 * 109.47264 * 94.46757 * 21 19 17 23 23 H 1.48493 * 109.47037 * 214.46780 * 21 19 17 24 24 H 1.48501 * 109.47175 * 334.46738 * 21 19 17 25 25 C 1.46920 * 118.74021 * 306.38921 * 16 15 14 26 26 C 1.39794 * 119.86078 * 0.27029 * 7 6 5 27 27 C 1.37609 * 119.93020 * 359.47257 * 26 7 6 28 28 H 1.09003 * 109.46585 * 270.00375 * 1 2 3 29 29 H 1.08997 * 109.47007 * 29.99551 * 1 2 3 30 30 H 1.08992 * 109.47502 * 150.00363 * 1 2 3 31 31 H 1.08996 * 109.47392 * 183.14936 * 3 2 1 32 32 H 1.09005 * 109.47172 * 303.14672 * 3 2 1 33 33 H 1.09004 * 109.47174 * 63.14409 * 3 2 1 34 34 H 1.08005 * 119.96829 * 359.97438 * 5 4 2 35 35 H 1.08005 * 120.03768 * 179.97438 * 6 5 4 36 36 H 0.96996 * 119.99874 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.45708 * 301.33321 * 13 11 10 38 38 H 1.08997 * 109.45943 * 61.30558 * 13 11 10 39 39 H 1.09004 * 109.49619 * 178.68049 * 14 13 11 40 40 H 1.09002 * 109.49688 * 58.58697 * 14 13 11 41 41 H 1.08993 * 109.58649 * 294.85101 * 15 14 13 42 42 H 1.08998 * 109.58687 * 174.42086 * 15 14 13 43 43 H 0.97008 * 119.99759 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.58869 * 173.39789 * 25 16 15 45 45 H 1.08996 * 109.58781 * 293.68181 * 25 16 15 46 46 H 1.08007 * 120.03181 * 179.72539 * 26 7 6 47 47 H 1.08003 * 119.96254 * 180.25355 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1602 -1.2042 0.0005 5 6 1.4680 -2.4058 0.1238 6 6 2.1531 -3.5993 0.1242 7 6 3.5455 -3.6043 0.0000 8 6 4.2830 -4.8819 -0.0006 9 8 3.6797 -5.9322 0.1075 10 7 5.6254 -4.8852 -0.1208 11 6 6.3577 -6.1540 -0.1208 12 1 5.7629 -6.9180 -0.6214 13 6 7.6869 -5.9766 -0.8585 14 6 8.4380 -7.3096 -0.8875 15 6 8.7371 -7.7540 0.5477 16 7 7.4782 -7.7871 1.3046 17 6 7.0999 -8.9164 1.9804 18 1 7.4493 -9.8843 1.6526 19 6 6.2673 -8.8172 3.0867 20 7 5.5722 -9.8622 3.4830 21 14 6.1336 -7.2005 4.0129 22 1 4.9727 -6.4302 3.4991 23 1 5.9451 -7.4734 5.4603 24 1 7.3769 -6.4126 3.8156 25 6 6.6333 -6.5852 1.3231 26 6 4.2381 -2.3958 -0.1184 27 6 3.5468 -1.2059 -0.1234 28 1 -0.3632 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5137 31 1 3.2678 1.0701 -0.0565 32 1 1.8927 1.8643 -0.8605 33 1 1.9773 1.8154 0.9169 34 1 0.3922 -2.4014 0.2193 35 1 1.6156 -4.5312 0.2202 36 1 6.1066 -4.0474 -0.2067 37 1 7.4944 -5.6459 -1.8790 38 1 8.2915 -5.2304 -0.3429 39 1 9.3737 -7.1882 -1.4333 40 1 7.8236 -8.0627 -1.3810 41 1 9.4248 -7.0479 1.0130 42 1 9.1831 -8.7485 0.5369 43 1 4.9906 -9.7929 4.2563 44 1 5.6912 -6.8085 1.8239 45 1 7.1484 -5.7846 1.8539 46 1 5.3143 -2.3962 -0.2100 47 1 4.0810 -0.2721 -0.2191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009337673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:41 Heat of formation + Delta-G solvation = 33.027406 kcal Electronic energy + Delta-G solvation = -26694.740391 eV Core-core repulsion = 23071.545597 eV Total energy + Delta-G solvation = -3623.194793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.22872 -39.11679 -37.53325 -36.12324 -34.24009 -32.67448 -31.42301 -30.71047 -30.54224 -28.86046 -28.45755 -25.55754 -25.22204 -23.02724 -22.42722 -22.18993 -21.24680 -19.98846 -19.46654 -18.14277 -16.85810 -16.75625 -16.24262 -15.53265 -15.49297 -15.18710 -15.00726 -14.45747 -14.12232 -13.98259 -13.79910 -13.74311 -13.66277 -13.16646 -12.98232 -12.73230 -12.62568 -12.47593 -12.35735 -12.30333 -12.15646 -12.10160 -11.52010 -11.03139 -10.93971 -10.68863 -10.54264 -10.18104 -10.12104 -10.04498 -9.67509 -9.50966 -9.33970 -9.12584 -8.77745 -8.41440 -7.56062 -6.90238 -5.85516 -3.20428 1.04533 1.32864 2.74917 3.12064 3.46252 3.51033 3.55805 3.58516 4.01101 4.48000 4.55135 4.64241 4.78421 4.89970 4.94617 4.96215 5.11670 5.14910 5.21585 5.23400 5.28108 5.32773 5.33188 5.40460 5.46034 5.55651 5.56900 5.89114 5.90591 5.99854 6.02190 6.09227 6.19004 6.26836 6.31678 6.42106 6.51382 6.58203 6.66940 6.68895 6.74924 6.86855 6.89484 7.03098 7.15748 7.88442 8.04336 8.41777 8.64532 9.02343 9.81878 10.17450 11.30320 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.003318 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.746808 B = 8436.941864 C = 9256.072580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.634 5.634 3 C 0.087 3.913 4 C 0.233 3.767 5 C -0.207 4.207 6 C -0.009 4.009 7 C -0.188 4.188 8 C 0.555 3.445 9 O -0.532 6.532 10 N -0.724 5.724 11 C 0.127 3.873 12 H 0.092 0.908 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.146 3.854 16 N -0.602 5.602 17 C -0.263 4.263 18 H 0.087 0.913 19 C 0.028 3.972 20 N -0.905 5.905 21 Si 0.878 3.122 22 H -0.286 1.286 23 H -0.304 1.304 24 H -0.272 1.272 25 C 0.121 3.879 26 C -0.037 4.037 27 C -0.210 4.210 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.391 0.609 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.022 0.978 42 H 0.065 0.935 43 H 0.262 0.738 44 H 0.079 0.921 45 H 0.024 0.976 46 H 0.125 0.875 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.838 24.238 -10.596 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.345 5.345 3 C -0.056 4.056 4 C 0.130 3.870 5 C -0.230 4.230 6 C -0.029 4.029 7 C -0.194 4.194 8 C 0.343 3.657 9 O -0.409 6.409 10 N -0.376 5.376 11 C 0.021 3.979 12 H 0.110 0.890 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.020 3.980 16 N -0.326 5.326 17 C -0.391 4.391 18 H 0.105 0.895 19 C -0.172 4.172 20 N -0.547 5.547 21 Si 0.709 3.291 22 H -0.213 1.213 23 H -0.232 1.232 24 H -0.197 1.197 25 C -0.006 4.006 26 C -0.056 4.056 27 C -0.232 4.232 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.226 0.774 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.041 0.959 46 H 0.143 0.857 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.471 23.535 -10.385 26.300 hybrid contribution 0.005 1.463 0.640 1.597 sum -5.465 24.999 -9.745 27.382 Atomic orbital electron populations 1.21660 0.79275 1.02810 1.01451 1.46248 1.05294 1.03334 1.79620 1.21751 0.97918 0.84841 1.01128 1.18008 0.91353 0.85763 0.91851 1.20628 0.99941 0.90745 1.11637 1.21061 0.92771 0.98046 0.91009 1.19801 0.94468 0.92901 1.12186 1.18196 0.82149 0.88828 0.76556 1.90835 1.68106 1.32943 1.48996 1.46027 1.06632 1.09825 1.75104 1.21732 0.91991 0.84883 0.99271 0.89010 1.21680 0.95734 0.98695 0.99321 1.22003 0.99212 0.96393 0.99607 1.20976 0.88017 0.99509 0.89525 1.44297 1.18253 1.11846 1.58170 1.18890 1.28095 0.85563 1.06538 0.89546 1.25220 0.98025 0.96423 0.97491 1.69841 1.27405 1.30194 1.27282 0.86987 0.78101 0.85225 0.78787 1.21349 1.23208 1.19679 1.21685 0.95956 0.89351 0.93638 1.21025 0.99235 0.91230 0.94119 1.20586 0.92177 0.98495 1.11986 0.93153 0.91467 0.91018 0.90111 0.92565 0.92763 0.85498 0.84575 0.77428 0.92454 0.92189 0.92192 0.91619 0.95959 0.91678 0.92805 0.90334 0.95860 0.85745 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.08 59.84 0.60 1.16 16 2 N -0.63 -5.23 3.39 -187.56 -0.64 -5.86 16 3 C 0.09 0.50 10.62 59.84 0.64 1.13 16 4 C 0.23 2.47 6.54 -83.86 -0.55 1.93 16 5 C -0.21 -2.39 9.13 -39.45 -0.36 -2.75 16 6 C -0.01 -0.13 9.58 -39.23 -0.38 -0.51 16 7 C -0.19 -2.82 5.88 -104.95 -0.62 -3.44 16 8 C 0.56 10.33 7.73 -12.48 -0.10 10.24 16 9 O -0.53 -12.45 16.00 5.28 0.08 -12.36 16 10 N -0.72 -11.98 5.03 -54.73 -0.28 -12.25 16 11 C 0.13 2.44 2.60 -67.81 -0.18 2.27 16 12 H 0.09 2.04 7.58 -51.93 -0.39 1.64 16 13 C -0.12 -1.77 5.35 -26.69 -0.14 -1.92 16 14 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 15 C 0.15 2.89 6.52 -3.71 -0.02 2.87 16 16 N -0.60 -15.01 2.78 -172.32 -0.48 -15.49 16 17 C -0.26 -7.72 10.04 -15.06 -0.15 -7.87 16 18 H 0.09 2.66 8.05 -52.49 -0.42 2.24 16 19 C 0.03 0.85 5.23 -17.43 -0.09 0.76 16 20 N -0.90 -29.27 13.97 55.49 0.78 -28.50 16 21 Si 0.88 24.08 24.34 -169.99 -4.14 19.94 16 22 H -0.29 -7.96 6.67 56.52 0.38 -7.58 16 23 H -0.30 -8.33 7.11 56.52 0.40 -7.93 16 24 H -0.27 -7.17 6.53 56.52 0.37 -6.80 16 25 C 0.12 2.84 3.78 -3.71 -0.01 2.83 16 26 C -0.04 -0.42 9.53 -39.23 -0.37 -0.80 16 27 C -0.21 -2.15 9.28 -39.45 -0.37 -2.52 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 30 H 0.07 0.43 6.44 -51.93 -0.33 0.09 16 31 H 0.08 0.43 5.28 -51.93 -0.27 0.15 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.13 1.20 6.28 -52.48 -0.33 0.87 16 35 H 0.14 2.01 7.64 -52.48 -0.40 1.61 16 36 H 0.39 4.92 6.62 -40.82 -0.27 4.65 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 43 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 44 H 0.08 2.17 4.43 -51.92 -0.23 1.94 16 45 H 0.02 0.54 7.03 -51.93 -0.37 0.18 16 46 H 0.12 1.13 6.39 -52.48 -0.34 0.80 16 47 H 0.13 0.98 5.72 -52.48 -0.30 0.68 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -37.06 364.70 -8.50 -45.56 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.06 Total: 2.39 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.26 Total: 1.08 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.62 Total: -62.10 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -4.14 Total: 19.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.06 -8.50 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009337673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.586 kcal (2) G-P(sol) polarization free energy of solvation -37.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds