Wall clock time and date at job start Tue Mar 31 2020 11:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00669 * 2 1 4 4 C 1.39053 * 119.99863 * 179.97438 * 2 1 3 5 5 C 1.39217 * 119.93027 * 354.16165 * 4 2 1 6 6 C 1.37609 * 120.07205 * 179.97438 * 5 4 2 7 7 C 1.39798 * 119.92866 * 359.97438 * 6 5 4 8 8 C 1.47520 * 120.07166 * 180.02562 * 7 6 5 9 9 O 1.21602 * 119.99802 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00449 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00100 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.52531 * 35.07882 * 11 10 8 13 13 C 1.53041 * 109.49520 * 155.16512 * 11 10 8 14 14 C 1.53038 * 109.53436 * 181.31473 * 13 11 10 15 15 C 1.53196 * 109.31523 * 298.63216 * 14 13 11 16 16 N 1.46927 * 108.77089 * 54.63557 * 15 14 13 17 17 C 1.36942 * 120.62763 * 126.41901 * 16 15 14 18 18 H 1.07998 * 119.99777 * 333.70034 * 17 16 15 19 19 C 1.38813 * 120.00288 * 153.70489 * 17 16 15 20 20 N 1.31613 * 120.00003 * 158.80882 * 19 17 16 21 21 Si 1.86805 * 119.99680 * 338.80914 * 19 17 16 22 22 H 1.48499 * 109.47264 * 94.46757 * 21 19 17 23 23 H 1.48493 * 109.47037 * 214.46780 * 21 19 17 24 24 H 1.48501 * 109.47175 * 334.46738 * 21 19 17 25 25 C 1.46920 * 118.74021 * 306.38921 * 16 15 14 26 26 C 1.39794 * 119.86078 * 0.27029 * 7 6 5 27 27 C 1.37609 * 119.93020 * 359.47257 * 26 7 6 28 28 H 1.09003 * 109.46585 * 270.00375 * 1 2 3 29 29 H 1.08997 * 109.47007 * 29.99551 * 1 2 3 30 30 H 1.08992 * 109.47502 * 150.00363 * 1 2 3 31 31 H 1.08996 * 109.47392 * 183.14936 * 3 2 1 32 32 H 1.09005 * 109.47172 * 303.14672 * 3 2 1 33 33 H 1.09004 * 109.47174 * 63.14409 * 3 2 1 34 34 H 1.08005 * 119.96829 * 359.97438 * 5 4 2 35 35 H 1.08005 * 120.03768 * 179.97438 * 6 5 4 36 36 H 0.96996 * 119.99874 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.45708 * 301.33321 * 13 11 10 38 38 H 1.08997 * 109.45943 * 61.30558 * 13 11 10 39 39 H 1.09004 * 109.49619 * 178.68049 * 14 13 11 40 40 H 1.09002 * 109.49688 * 58.58697 * 14 13 11 41 41 H 1.08993 * 109.58649 * 294.85101 * 15 14 13 42 42 H 1.08998 * 109.58687 * 174.42086 * 15 14 13 43 43 H 0.97008 * 119.99759 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.58869 * 173.39789 * 25 16 15 45 45 H 1.08996 * 109.58781 * 293.68181 * 25 16 15 46 46 H 1.08007 * 120.03181 * 179.72539 * 26 7 6 47 47 H 1.08003 * 119.96254 * 180.25355 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1602 -1.2042 0.0005 5 6 1.4680 -2.4058 0.1238 6 6 2.1531 -3.5993 0.1242 7 6 3.5455 -3.6043 0.0000 8 6 4.2830 -4.8819 -0.0006 9 8 3.6797 -5.9322 0.1075 10 7 5.6254 -4.8852 -0.1208 11 6 6.3577 -6.1540 -0.1208 12 1 5.7629 -6.9180 -0.6214 13 6 7.6869 -5.9766 -0.8585 14 6 8.4380 -7.3096 -0.8875 15 6 8.7371 -7.7540 0.5477 16 7 7.4782 -7.7871 1.3046 17 6 7.0999 -8.9164 1.9804 18 1 7.4493 -9.8843 1.6526 19 6 6.2673 -8.8172 3.0867 20 7 5.5722 -9.8622 3.4830 21 14 6.1336 -7.2005 4.0129 22 1 4.9727 -6.4302 3.4991 23 1 5.9451 -7.4734 5.4603 24 1 7.3769 -6.4126 3.8156 25 6 6.6333 -6.5852 1.3231 26 6 4.2381 -2.3958 -0.1184 27 6 3.5468 -1.2059 -0.1234 28 1 -0.3632 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5137 31 1 3.2678 1.0701 -0.0565 32 1 1.8927 1.8643 -0.8605 33 1 1.9773 1.8154 0.9169 34 1 0.3922 -2.4014 0.2193 35 1 1.6156 -4.5312 0.2202 36 1 6.1066 -4.0474 -0.2067 37 1 7.4944 -5.6459 -1.8790 38 1 8.2915 -5.2304 -0.3429 39 1 9.3737 -7.1882 -1.4333 40 1 7.8236 -8.0627 -1.3810 41 1 9.4248 -7.0479 1.0130 42 1 9.1831 -8.7485 0.5369 43 1 4.9906 -9.7929 4.2563 44 1 5.6912 -6.8085 1.8239 45 1 7.1484 -5.7846 1.8539 46 1 5.3143 -2.3962 -0.2100 47 1 4.0810 -0.2721 -0.2191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009337673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:40 Heat of formation + Delta-G solvation = 6.195617 kcal Electronic energy + Delta-G solvation = -26695.903904 eV Core-core repulsion = 23071.545597 eV Total energy + Delta-G solvation = -3624.358307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39087 -40.26112 -39.07272 -36.98496 -35.93544 -34.50700 -32.64158 -32.28301 -31.68653 -30.15352 -29.03275 -27.21417 -26.40857 -24.51586 -23.74955 -23.26988 -22.50866 -21.40666 -20.83699 -19.19110 -18.84618 -17.82475 -17.61323 -17.04606 -16.38380 -16.17674 -16.03289 -15.98948 -15.75078 -15.46262 -15.19395 -14.90303 -14.65877 -14.59869 -14.44465 -14.07474 -13.85513 -13.47135 -13.46158 -13.38091 -13.33992 -12.92771 -12.86305 -12.64414 -12.54994 -12.45690 -11.79896 -11.75296 -11.70165 -11.64714 -11.34974 -10.93776 -10.89667 -10.81720 -10.16894 -10.02307 -8.96170 -8.31228 -8.22681 -5.51575 0.03301 0.44545 1.25779 1.27685 1.38368 1.90872 2.13337 2.17114 2.36979 2.94428 3.02294 3.37919 3.74538 3.77001 3.90059 3.92233 4.05267 4.15729 4.19511 4.34249 4.34391 4.40698 4.42238 4.48886 4.53056 4.62344 4.67628 4.76203 4.80787 4.87776 4.88863 4.90787 5.02177 5.06400 5.09366 5.16046 5.17976 5.23604 5.31934 5.43611 5.48504 5.57073 5.70656 5.83115 6.07732 6.23286 6.40832 6.61307 6.87398 7.30955 7.59026 7.98102 8.97188 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.003318 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.746808 B = 8436.941864 C = 9256.072580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.632 5.632 3 C 0.078 3.922 4 C 0.239 3.761 5 C -0.213 4.213 6 C -0.028 4.028 7 C -0.222 4.222 8 C 0.549 3.451 9 O -0.598 6.598 10 N -0.708 5.708 11 C 0.136 3.864 12 H 0.051 0.949 13 C -0.106 4.106 14 C -0.125 4.125 15 C 0.136 3.864 16 N -0.619 5.619 17 C -0.246 4.246 18 H 0.058 0.942 19 C -0.036 4.036 20 N -0.955 5.955 21 Si 0.944 3.056 22 H -0.302 1.302 23 H -0.306 1.306 24 H -0.248 1.248 25 C 0.120 3.880 26 C -0.026 4.026 27 C -0.208 4.208 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.142 0.858 35 H 0.111 0.889 36 H 0.415 0.585 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.260 0.740 44 H 0.030 0.970 45 H 0.038 0.962 46 H 0.153 0.847 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 29.688 -12.172 32.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.341 5.341 3 C -0.064 4.064 4 C 0.133 3.867 5 C -0.235 4.235 6 C -0.048 4.048 7 C -0.227 4.227 8 C 0.339 3.661 9 O -0.480 6.480 10 N -0.360 5.360 11 C 0.029 3.971 12 H 0.069 0.931 13 C -0.143 4.143 14 C -0.164 4.164 15 C 0.012 3.988 16 N -0.343 5.343 17 C -0.376 4.376 18 H 0.076 0.924 19 C -0.231 4.231 20 N -0.601 5.601 21 Si 0.774 3.226 22 H -0.230 1.230 23 H -0.234 1.234 24 H -0.172 1.172 25 C -0.006 4.006 26 C -0.045 4.045 27 C -0.230 4.230 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.129 0.871 36 H 0.254 0.746 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.171 0.829 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.504 29.103 -12.002 31.675 hybrid contribution -0.670 -0.116 1.032 1.236 sum -4.174 28.987 -10.970 31.273 Atomic orbital electron populations 1.21849 0.78206 1.03904 1.02041 1.46594 1.06298 1.03359 1.77801 1.21994 0.98172 0.83737 1.02465 1.18203 0.91972 0.86284 0.90264 1.20711 1.00711 0.90353 1.11766 1.21005 0.93032 0.98263 0.92504 1.19603 0.94534 0.92335 1.16265 1.18899 0.82683 0.89429 0.75062 1.90796 1.69445 1.35565 1.52178 1.45784 1.06071 1.09962 1.74231 1.21373 0.94052 0.85242 0.96417 0.93083 1.21674 0.92928 0.98900 1.00847 1.21930 1.01186 0.96311 0.96974 1.21280 0.86001 1.00175 0.91301 1.44466 1.20643 1.10854 1.58386 1.18911 1.26337 0.86403 1.05941 0.92405 1.25870 0.98730 0.99498 0.99021 1.69969 1.29346 1.32523 1.28290 0.85932 0.78196 0.81554 0.76916 1.23034 1.23425 1.17153 1.21633 0.93625 0.89078 0.96295 1.21258 1.00549 0.90111 0.92587 1.20944 0.92052 0.99257 1.10711 0.92792 0.89184 0.91218 0.89352 0.90822 0.91756 0.84076 0.87120 0.74642 0.89148 0.89265 0.87586 0.93591 0.93527 0.92389 0.93153 0.95129 0.94374 0.82933 0.82038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.08 127.77 1.29 2.05 16 2 N -0.63 -8.15 3.39 -747.32 -2.53 -10.69 16 3 C 0.08 0.54 10.62 127.77 1.36 1.90 16 4 C 0.24 4.42 6.54 38.47 0.25 4.67 16 5 C -0.21 -4.79 9.13 22.36 0.20 -4.58 16 6 C -0.03 -0.83 9.58 22.50 0.22 -0.62 16 7 C -0.22 -6.67 5.88 -20.08 -0.12 -6.79 16 8 C 0.55 21.12 7.73 86.69 0.67 21.79 16 9 O -0.60 -30.30 16.00 -4.04 -0.06 -30.36 16 10 N -0.71 -22.63 5.03 -445.33 -2.24 -24.87 16 11 C 0.14 5.14 2.60 45.07 0.12 5.26 16 12 H 0.05 2.36 7.58 -2.39 -0.02 2.34 16 13 C -0.11 -2.80 5.35 30.62 0.16 -2.63 16 14 C -0.12 -3.62 6.08 30.67 0.19 -3.44 16 15 C 0.14 5.14 6.52 86.36 0.56 5.71 16 16 N -0.62 -30.96 2.78 -699.10 -1.95 -32.91 16 17 C -0.25 -15.03 10.04 84.03 0.84 -14.19 16 18 H 0.06 3.77 8.05 -2.91 -0.02 3.75 16 19 C -0.04 -2.34 5.23 84.86 0.44 -1.89 16 20 N -0.95 -65.27 13.97 21.65 0.30 -64.96 16 21 Si 0.94 52.06 24.34 68.60 1.67 53.73 16 22 H -0.30 -17.28 6.67 99.48 0.66 -16.62 16 23 H -0.31 -16.69 7.11 99.48 0.71 -15.98 16 24 H -0.25 -12.48 6.53 99.48 0.65 -11.83 16 25 C 0.12 5.66 3.78 86.36 0.33 5.99 16 26 C -0.03 -0.52 9.53 22.50 0.21 -0.31 16 27 C -0.21 -3.46 9.28 22.36 0.21 -3.25 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.09 0.45 8.07 -2.39 -0.02 0.43 16 30 H 0.07 0.69 6.44 -2.39 -0.02 0.67 16 31 H 0.09 0.48 5.28 -2.39 -0.01 0.47 16 32 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.14 2.60 6.28 -2.91 -0.02 2.58 16 35 H 0.11 3.71 7.64 -2.91 -0.02 3.69 16 36 H 0.41 9.03 6.62 -92.71 -0.61 8.42 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 43 H 0.26 16.95 8.31 -92.70 -0.77 16.17 16 44 H 0.03 1.74 4.43 -2.38 -0.01 1.73 16 45 H 0.04 1.68 7.03 -2.39 -0.02 1.66 16 46 H 0.15 2.10 6.39 -2.91 -0.02 2.08 16 47 H 0.16 1.57 5.72 -2.91 -0.02 1.56 16 Total: -1.00 -89.29 364.70 2.39 -86.90 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.27 Total: 13.49 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.93 Total: 9.66 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -6.42 Total: -133.43 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.06 Total: -30.36 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 1.67 Total: 53.73 kcal Total: -89.29 2.39 -86.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009337673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.097 kcal (2) G-P(sol) polarization free energy of solvation -89.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds