Wall clock time and date at job start Tue Mar 31 2020 11:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99996 * 2 1 4 4 C 1.39041 * 119.99859 * 180.02562 * 2 1 3 5 5 C 1.39226 * 119.93317 * 359.97438 * 4 2 1 6 6 C 1.37604 * 120.06966 * 179.74778 * 5 4 2 7 7 C 1.39795 * 119.93056 * 0.25264 * 6 5 4 8 8 C 1.47521 * 120.06989 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99936 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00316 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00281 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.49722 * 324.99834 * 11 10 8 13 13 C 1.53036 * 109.50072 * 204.93528 * 11 10 8 14 14 C 1.53043 * 109.54350 * 178.71661 * 13 11 10 15 15 C 1.53191 * 109.33702 * 61.31311 * 14 13 11 16 16 N 1.46925 * 108.77581 * 305.37971 * 15 14 13 17 17 C 1.36939 * 120.63539 * 233.63239 * 16 15 14 18 18 H 1.07994 * 120.00534 * 152.60243 * 17 16 15 19 19 C 1.38819 * 119.99684 * 332.60476 * 17 16 15 20 20 N 1.31614 * 120.00006 * 159.35734 * 19 17 16 21 21 Si 1.86800 * 119.99860 * 339.36178 * 19 17 16 22 22 H 1.48500 * 109.47248 * 92.90201 * 21 19 17 23 23 H 1.48501 * 109.46845 * 212.89946 * 21 19 17 24 24 H 1.48496 * 109.47135 * 332.89995 * 21 19 17 25 25 C 1.46932 * 118.73823 * 53.61453 * 16 15 14 26 26 C 1.39793 * 119.86555 * 0.02562 * 7 6 5 27 27 C 1.37607 * 119.92880 * 359.97438 * 26 7 6 28 28 H 1.09004 * 109.46787 * 270.00035 * 1 2 3 29 29 H 1.08996 * 109.47119 * 30.00112 * 1 2 3 30 30 H 1.08995 * 109.47243 * 150.00459 * 1 2 3 31 31 H 1.09000 * 109.46601 * 240.00350 * 3 2 1 32 32 H 1.09002 * 109.46777 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46967 * 119.99884 * 3 2 1 34 34 H 1.08000 * 119.96198 * 0.02562 * 5 4 2 35 35 H 1.07998 * 120.03732 * 180.23115 * 6 5 4 36 36 H 0.96994 * 119.99711 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.45794 * 298.70289 * 13 11 10 38 38 H 1.09000 * 109.46226 * 58.65968 * 13 11 10 39 39 H 1.09000 * 109.46250 * 301.36459 * 14 13 11 40 40 H 1.08996 * 109.52353 * 181.30056 * 14 13 11 41 41 H 1.08999 * 109.58427 * 185.60043 * 15 14 13 42 42 H 1.08991 * 109.70731 * 65.24149 * 15 14 13 43 43 H 0.96995 * 120.00624 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.58685 * 186.60258 * 25 16 15 45 45 H 1.09001 * 109.70084 * 66.24372 * 25 16 15 46 46 H 1.07998 * 120.03582 * 179.97438 * 26 7 6 47 47 H 1.08003 * 119.96761 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2042 -0.0005 5 6 1.4626 -2.4091 -0.0005 6 6 2.1478 -3.6024 -0.0063 7 6 3.5457 -3.6041 -0.0068 8 6 4.2834 -4.8816 -0.0125 9 8 3.6754 -5.9347 -0.0162 10 7 5.6311 -4.8817 -0.0124 11 6 6.3636 -6.1504 -0.0174 12 1 5.8166 -6.8886 0.5690 13 6 7.7519 -5.9411 0.5916 14 6 8.5061 -7.2725 0.6162 15 6 8.6784 -7.7845 -0.8174 16 7 7.3577 -7.8509 -1.4577 17 6 6.9234 -9.0103 -2.0428 18 1 5.8657 -9.2178 -2.1105 19 6 7.8427 -9.9191 -2.5488 20 7 7.4936 -11.1745 -2.7339 21 14 9.5754 -9.3601 -2.9668 22 1 10.4635 -9.5844 -1.7979 23 1 10.0795 -10.1370 -4.1277 24 1 9.5607 -7.9148 -3.3071 25 6 6.5116 -6.6497 -1.4581 26 6 4.2433 -2.3926 -0.0010 27 6 3.5524 -1.2026 0.0048 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 2.8241 1.3264 -0.8900 32 1 1.4892 2.0972 -0.0005 33 1 2.8242 1.3265 0.8900 34 1 0.3826 -2.4071 -0.0005 35 1 1.6061 -4.5367 -0.0101 36 1 6.1161 -4.0417 -0.0091 37 1 8.3072 -5.2208 -0.0092 38 1 7.6490 -5.5627 1.6086 39 1 7.9393 -8.0004 1.1968 40 1 9.4860 -7.1278 1.0711 41 1 9.1259 -8.7782 -0.7991 42 1 9.3214 -7.1043 -1.3757 43 1 8.1360 -11.8096 -3.0871 44 1 5.5295 -6.8946 -1.8627 45 1 6.9749 -5.8740 -2.0679 46 1 5.3233 -2.3907 -0.0009 47 1 4.0908 -0.2663 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009337676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:45 Heat of formation + Delta-G solvation = 28.288946 kcal Electronic energy + Delta-G solvation = -26261.662168 eV Core-core repulsion = 22638.261899 eV Total energy + Delta-G solvation = -3623.400268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.27025 -39.14844 -37.56781 -36.19281 -34.38426 -32.51030 -31.40148 -30.77999 -30.65095 -28.90494 -28.49402 -25.62340 -25.24312 -23.03722 -22.43032 -21.92385 -21.56718 -19.96130 -19.63580 -18.11129 -16.90258 -16.76335 -16.20897 -15.53052 -15.46190 -15.24135 -15.02762 -14.73345 -14.06119 -13.92211 -13.82346 -13.74465 -13.68318 -13.17543 -13.11707 -12.83255 -12.73799 -12.56991 -12.43700 -12.30395 -12.21022 -11.99492 -11.47730 -11.08437 -11.03956 -10.85423 -10.69949 -10.11018 -10.09135 -9.92353 -9.70044 -9.58033 -9.39310 -9.16773 -8.89985 -8.45315 -7.61833 -6.90328 -5.86937 -3.23051 0.99380 1.28687 2.70399 3.06004 3.35807 3.43776 3.52354 3.55657 3.95234 4.48476 4.53942 4.59042 4.74282 4.79648 4.87047 4.92501 5.08024 5.11376 5.17667 5.22351 5.24846 5.26969 5.34111 5.36821 5.43200 5.49296 5.58489 5.84275 5.89147 5.96176 6.00782 6.07786 6.14251 6.25468 6.35276 6.37280 6.49945 6.54080 6.65053 6.69195 6.72207 6.82782 6.86786 7.02155 7.10823 7.82169 8.04198 8.41703 8.56483 9.02330 9.79427 10.15595 11.29132 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.002542 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.864807 B =11010.857604 C =11383.153127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.634 5.634 3 C 0.093 3.907 4 C 0.233 3.767 5 C -0.208 4.208 6 C -0.010 4.010 7 C -0.189 4.189 8 C 0.558 3.442 9 O -0.537 6.537 10 N -0.722 5.722 11 C 0.126 3.874 12 H 0.091 0.909 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.122 3.878 16 N -0.602 5.602 17 C -0.256 4.256 18 H 0.087 0.913 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.883 3.117 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.272 1.272 25 C 0.145 3.855 26 C -0.037 4.037 27 C -0.206 4.206 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.392 0.608 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.025 0.975 43 H 0.262 0.738 44 H 0.067 0.933 45 H 0.022 0.978 46 H 0.125 0.875 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 27.547 8.258 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.344 5.344 3 C -0.050 4.050 4 C 0.130 3.870 5 C -0.230 4.230 6 C -0.030 4.030 7 C -0.194 4.194 8 C 0.346 3.654 9 O -0.415 6.415 10 N -0.373 5.373 11 C 0.021 3.979 12 H 0.109 0.891 13 C -0.154 4.154 14 C -0.171 4.171 15 C -0.004 4.004 16 N -0.326 5.326 17 C -0.384 4.384 18 H 0.105 0.895 19 C -0.177 4.177 20 N -0.552 5.552 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.197 1.197 25 C 0.017 3.983 26 C -0.056 4.056 27 C -0.228 4.228 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.227 0.773 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.039 0.961 46 H 0.142 0.858 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.594 26.780 8.171 29.597 hybrid contribution 1.297 0.761 -0.302 1.534 sum -8.297 27.542 7.868 29.821 Atomic orbital electron populations 1.21730 0.79291 1.02931 1.01406 1.46279 1.05281 1.03390 1.79448 1.21651 0.97122 0.84712 1.01488 1.17995 0.91333 0.85682 0.92013 1.20644 0.99822 0.90695 1.11874 1.21033 0.92775 0.98000 0.91158 1.19772 0.94286 0.92812 1.12528 1.18165 0.82139 0.88781 0.76297 1.90811 1.68101 1.32803 1.49759 1.46000 1.06091 1.09671 1.75570 1.21669 0.91586 0.84687 0.99993 0.89130 1.21679 0.95277 0.98586 0.99868 1.21993 0.99167 0.96282 0.99694 1.21394 0.88179 0.99919 0.90874 1.44302 1.15144 1.09028 1.64090 1.18968 0.94146 0.93426 1.31903 0.89549 1.25273 0.97793 0.95564 0.99039 1.69841 1.35504 1.01715 1.48091 0.86942 0.85846 0.78660 0.77161 1.21648 1.23229 1.19662 1.21218 0.95861 0.88734 0.92440 1.21028 0.99297 0.91248 0.94043 1.20516 0.91888 0.98511 1.11884 0.93151 0.91431 0.90954 0.92528 0.90827 0.92545 0.85498 0.84628 0.77343 0.92183 0.92437 0.91375 0.92283 0.90797 0.95691 0.92833 0.91413 0.96059 0.85767 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.14 59.85 0.61 1.06 16 2 N -0.63 -4.59 3.39 -187.55 -0.64 -5.22 16 3 C 0.09 0.45 9.39 59.85 0.56 1.01 16 4 C 0.23 2.22 6.55 -83.86 -0.55 1.67 16 5 C -0.21 -2.13 9.18 -39.45 -0.36 -2.49 16 6 C -0.01 -0.13 9.58 -39.23 -0.38 -0.50 16 7 C -0.19 -2.49 5.88 -104.95 -0.62 -3.11 16 8 C 0.56 9.17 7.73 -12.48 -0.10 9.07 16 9 O -0.54 -11.19 16.00 5.28 0.08 -11.11 16 10 N -0.72 -10.59 5.03 -54.74 -0.28 -10.87 16 11 C 0.13 2.24 2.60 -67.81 -0.18 2.07 16 12 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 13 C -0.12 -1.77 5.36 -26.69 -0.14 -1.91 16 14 C -0.13 -2.32 6.08 -26.61 -0.16 -2.48 16 15 C 0.12 2.69 4.21 -3.71 -0.02 2.68 16 16 N -0.60 -14.98 2.77 -172.32 -0.48 -15.45 16 17 C -0.26 -7.52 10.04 -15.06 -0.15 -7.67 16 18 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 19 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 20 N -0.91 -28.71 13.97 55.49 0.78 -27.94 16 21 Si 0.88 22.87 24.34 -169.99 -4.14 18.73 16 22 H -0.29 -7.14 6.62 56.52 0.37 -6.77 16 23 H -0.30 -8.00 7.11 56.52 0.40 -7.59 16 24 H -0.27 -6.89 6.63 56.52 0.37 -6.52 16 25 C 0.14 3.10 6.09 -3.71 -0.02 3.08 16 26 C -0.04 -0.38 9.53 -39.23 -0.37 -0.75 16 27 C -0.21 -1.90 9.28 -39.45 -0.37 -2.27 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.23 7.92 -51.93 -0.41 -0.18 16 30 H 0.07 0.37 6.17 -51.93 -0.32 0.05 16 31 H 0.06 0.27 7.94 -51.93 -0.41 -0.15 16 32 H 0.07 0.22 7.79 -51.93 -0.40 -0.18 16 33 H 0.06 0.26 7.92 -51.93 -0.41 -0.15 16 34 H 0.13 1.04 6.11 -52.49 -0.32 0.72 16 35 H 0.14 1.76 7.64 -52.49 -0.40 1.36 16 36 H 0.39 4.38 6.62 -40.82 -0.27 4.11 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.79 4.50 -51.93 -0.23 1.56 16 42 H 0.03 0.54 7.07 -51.93 -0.37 0.17 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.07 1.60 7.93 -51.93 -0.41 1.19 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.12 0.99 6.39 -52.49 -0.34 0.66 16 47 H 0.12 0.89 6.70 -52.48 -0.35 0.53 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -35.65 366.22 -8.67 -44.33 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.19 Total: 1.98 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.33 Total: 0.03 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.61 Total: -59.48 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.14 Total: 18.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.65 -8.67 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009337676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.617 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds