Wall clock time and date at job start Tue Mar 31 2020 11:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99996 * 2 1 4 4 C 1.39041 * 119.99859 * 180.02562 * 2 1 3 5 5 C 1.39226 * 119.93317 * 359.97438 * 4 2 1 6 6 C 1.37604 * 120.06966 * 179.74778 * 5 4 2 7 7 C 1.39795 * 119.93056 * 0.25264 * 6 5 4 8 8 C 1.47521 * 120.06989 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99936 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00316 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00281 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.49722 * 324.99834 * 11 10 8 13 13 C 1.53036 * 109.50072 * 204.93528 * 11 10 8 14 14 C 1.53043 * 109.54350 * 178.71661 * 13 11 10 15 15 C 1.53191 * 109.33702 * 61.31311 * 14 13 11 16 16 N 1.46925 * 108.77581 * 305.37971 * 15 14 13 17 17 C 1.36939 * 120.63539 * 233.63239 * 16 15 14 18 18 H 1.07994 * 120.00534 * 152.60243 * 17 16 15 19 19 C 1.38819 * 119.99684 * 332.60476 * 17 16 15 20 20 N 1.31614 * 120.00006 * 159.35734 * 19 17 16 21 21 Si 1.86800 * 119.99860 * 339.36178 * 19 17 16 22 22 H 1.48500 * 109.47248 * 92.90201 * 21 19 17 23 23 H 1.48501 * 109.46845 * 212.89946 * 21 19 17 24 24 H 1.48496 * 109.47135 * 332.89995 * 21 19 17 25 25 C 1.46932 * 118.73823 * 53.61453 * 16 15 14 26 26 C 1.39793 * 119.86555 * 0.02562 * 7 6 5 27 27 C 1.37607 * 119.92880 * 359.97438 * 26 7 6 28 28 H 1.09004 * 109.46787 * 270.00035 * 1 2 3 29 29 H 1.08996 * 109.47119 * 30.00112 * 1 2 3 30 30 H 1.08995 * 109.47243 * 150.00459 * 1 2 3 31 31 H 1.09000 * 109.46601 * 240.00350 * 3 2 1 32 32 H 1.09002 * 109.46777 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46967 * 119.99884 * 3 2 1 34 34 H 1.08000 * 119.96198 * 0.02562 * 5 4 2 35 35 H 1.07998 * 120.03732 * 180.23115 * 6 5 4 36 36 H 0.96994 * 119.99711 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.45794 * 298.70289 * 13 11 10 38 38 H 1.09000 * 109.46226 * 58.65968 * 13 11 10 39 39 H 1.09000 * 109.46250 * 301.36459 * 14 13 11 40 40 H 1.08996 * 109.52353 * 181.30056 * 14 13 11 41 41 H 1.08999 * 109.58427 * 185.60043 * 15 14 13 42 42 H 1.08991 * 109.70731 * 65.24149 * 15 14 13 43 43 H 0.96995 * 120.00624 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.58685 * 186.60258 * 25 16 15 45 45 H 1.09001 * 109.70084 * 66.24372 * 25 16 15 46 46 H 1.07998 * 120.03582 * 179.97438 * 26 7 6 47 47 H 1.08003 * 119.96761 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2042 -0.0005 5 6 1.4626 -2.4091 -0.0005 6 6 2.1478 -3.6024 -0.0063 7 6 3.5457 -3.6041 -0.0068 8 6 4.2834 -4.8816 -0.0125 9 8 3.6754 -5.9347 -0.0162 10 7 5.6311 -4.8817 -0.0124 11 6 6.3636 -6.1504 -0.0174 12 1 5.8166 -6.8886 0.5690 13 6 7.7519 -5.9411 0.5916 14 6 8.5061 -7.2725 0.6162 15 6 8.6784 -7.7845 -0.8174 16 7 7.3577 -7.8509 -1.4577 17 6 6.9234 -9.0103 -2.0428 18 1 5.8657 -9.2178 -2.1105 19 6 7.8427 -9.9191 -2.5488 20 7 7.4936 -11.1745 -2.7339 21 14 9.5754 -9.3601 -2.9668 22 1 10.4635 -9.5844 -1.7979 23 1 10.0795 -10.1370 -4.1277 24 1 9.5607 -7.9148 -3.3071 25 6 6.5116 -6.6497 -1.4581 26 6 4.2433 -2.3926 -0.0010 27 6 3.5524 -1.2026 0.0048 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 2.8241 1.3264 -0.8900 32 1 1.4892 2.0972 -0.0005 33 1 2.8242 1.3265 0.8900 34 1 0.3826 -2.4071 -0.0005 35 1 1.6061 -4.5367 -0.0101 36 1 6.1161 -4.0417 -0.0091 37 1 8.3072 -5.2208 -0.0092 38 1 7.6490 -5.5627 1.6086 39 1 7.9393 -8.0004 1.1968 40 1 9.4860 -7.1278 1.0711 41 1 9.1259 -8.7782 -0.7991 42 1 9.3214 -7.1043 -1.3757 43 1 8.1360 -11.8096 -3.0871 44 1 5.5295 -6.8946 -1.8627 45 1 6.9749 -5.8740 -2.0679 46 1 5.3233 -2.3907 -0.0009 47 1 4.0908 -0.2663 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009337676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:44 Heat of formation + Delta-G solvation = 3.008940 kcal Electronic energy + Delta-G solvation = -26262.758391 eV Core-core repulsion = 22638.261899 eV Total energy + Delta-G solvation = -3624.496492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33178 -40.19908 -39.06982 -36.95855 -36.00463 -34.31225 -32.70864 -32.22221 -31.65253 -30.16607 -28.98940 -27.22985 -26.37641 -24.33866 -23.74379 -23.18804 -22.64548 -21.32946 -20.94125 -19.05400 -18.79108 -17.75216 -17.45279 -17.08635 -16.42903 -16.20400 -15.99359 -15.92299 -15.63030 -15.37186 -15.18756 -14.86989 -14.63833 -14.52966 -14.39666 -14.07878 -13.75558 -13.52349 -13.37719 -13.34378 -13.29980 -12.95789 -12.81327 -12.76546 -12.57319 -12.43498 -11.84181 -11.76943 -11.65748 -11.48791 -11.35213 -10.97603 -10.82739 -10.73555 -10.15000 -9.97157 -8.93385 -8.28455 -8.17961 -5.52057 0.08616 0.49542 1.29854 1.41837 1.52702 1.96616 2.16941 2.20547 2.41184 2.99959 3.05087 3.36189 3.78899 3.84128 3.94922 3.99540 4.05178 4.11659 4.18245 4.33263 4.37368 4.39567 4.43804 4.52635 4.61414 4.65737 4.69484 4.72100 4.79566 4.90868 4.93354 4.94147 4.99887 5.04496 5.08147 5.10840 5.21689 5.23263 5.33174 5.40557 5.51599 5.58708 5.76671 5.84009 6.09866 6.27273 6.43851 6.66292 6.89159 7.35218 7.59299 7.97131 9.02580 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.002542 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.864807 B =11010.857604 C =11383.153127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.632 5.632 3 C 0.085 3.915 4 C 0.237 3.763 5 C -0.214 4.214 6 C -0.027 4.027 7 C -0.218 4.218 8 C 0.554 3.446 9 O -0.598 6.598 10 N -0.704 5.704 11 C 0.138 3.862 12 H 0.050 0.950 13 C -0.105 4.105 14 C -0.126 4.126 15 C 0.113 3.887 16 N -0.618 5.618 17 C -0.257 4.257 18 H 0.033 0.967 19 C -0.039 4.039 20 N -0.960 5.960 21 Si 0.962 3.038 22 H -0.265 1.265 23 H -0.310 1.310 24 H -0.256 1.256 25 C 0.146 3.854 26 C -0.026 4.026 27 C -0.206 4.206 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.415 0.585 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.263 0.737 44 H 0.025 0.975 45 H 0.044 0.956 46 H 0.151 0.849 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.659 32.839 9.314 34.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.340 5.340 3 C -0.057 4.057 4 C 0.130 3.870 5 C -0.236 4.236 6 C -0.047 4.047 7 C -0.223 4.223 8 C 0.344 3.656 9 O -0.480 6.480 10 N -0.357 5.357 11 C 0.032 3.968 12 H 0.068 0.932 13 C -0.143 4.143 14 C -0.166 4.166 15 C -0.011 4.011 16 N -0.343 5.343 17 C -0.387 4.387 18 H 0.050 0.950 19 C -0.234 4.234 20 N -0.606 5.606 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.239 1.239 24 H -0.180 1.180 25 C 0.020 3.980 26 C -0.046 4.046 27 C -0.228 4.228 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.253 0.747 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.062 0.938 46 H 0.169 0.831 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.157 32.194 9.261 34.256 hybrid contribution 0.310 -0.753 -0.616 1.021 sum -6.847 31.441 8.645 33.319 Atomic orbital electron populations 1.21917 0.78197 1.03891 1.02124 1.46613 1.06281 1.03407 1.77708 1.21883 0.97802 0.84010 1.02013 1.18196 0.91911 0.86279 0.90577 1.20741 1.00619 0.90317 1.11944 1.20999 0.93000 0.98239 0.92443 1.19560 0.94307 0.92191 1.16275 1.18794 0.82547 0.89320 0.74890 1.90780 1.69309 1.35243 1.52650 1.45719 1.05571 1.09538 1.74831 1.21257 0.93539 0.85231 0.96820 0.93170 1.21648 0.92560 0.97963 1.02108 1.21926 1.01490 0.96884 0.96279 1.21569 0.86391 0.99412 0.93750 1.44369 1.16810 1.08488 1.64610 1.18769 0.92104 0.95440 1.32344 0.94960 1.26036 1.03068 0.95188 0.99071 1.70001 1.37594 1.03166 1.49826 0.85690 0.79848 0.78521 0.77050 1.19098 1.23883 1.18048 1.21265 0.93440 0.88091 0.95253 1.21245 1.00561 0.90199 0.92558 1.20825 0.91844 0.99173 1.10936 0.92508 0.89276 0.91296 0.92005 0.88754 0.91873 0.84055 0.86801 0.74677 0.89153 0.89052 0.93452 0.88128 0.93183 0.93595 0.92783 0.95614 0.93821 0.83099 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.14 127.77 1.30 1.90 16 2 N -0.63 -7.13 3.39 -747.28 -2.53 -9.66 16 3 C 0.08 0.48 9.39 127.77 1.20 1.68 16 4 C 0.24 3.95 6.55 38.47 0.25 4.20 16 5 C -0.21 -4.27 9.18 22.36 0.21 -4.06 16 6 C -0.03 -0.71 9.58 22.50 0.22 -0.49 16 7 C -0.22 -5.80 5.88 -20.08 -0.12 -5.92 16 8 C 0.55 18.97 7.73 86.69 0.67 19.64 16 9 O -0.60 -27.27 16.00 -4.02 -0.06 -27.33 16 10 N -0.70 -20.05 5.03 -445.36 -2.24 -22.29 16 11 C 0.14 4.89 2.60 45.07 0.12 5.01 16 12 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 13 C -0.10 -2.79 5.36 30.62 0.16 -2.63 16 14 C -0.13 -4.07 6.08 30.67 0.19 -3.88 16 15 C 0.11 4.77 4.21 86.36 0.36 5.13 16 16 N -0.62 -31.36 2.77 -699.10 -1.94 -33.29 16 17 C -0.26 -15.99 10.04 84.03 0.84 -15.15 16 18 H 0.03 2.29 8.06 -2.91 -0.02 2.27 16 19 C -0.04 -2.43 5.23 84.86 0.44 -1.98 16 20 N -0.96 -63.66 13.97 21.65 0.30 -63.36 16 21 Si 0.96 47.78 24.34 68.60 1.67 49.45 16 22 H -0.26 -12.08 6.62 99.48 0.66 -11.42 16 23 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 24 H -0.26 -11.98 6.63 99.48 0.66 -11.32 16 25 C 0.15 6.41 6.09 86.36 0.53 6.93 16 26 C -0.03 -0.48 9.53 22.50 0.21 -0.26 16 27 C -0.21 -3.13 9.28 22.36 0.21 -2.92 16 28 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.09 0.31 7.92 -2.39 -0.02 0.29 16 30 H 0.07 0.58 6.17 -2.39 -0.01 0.56 16 31 H 0.06 0.32 7.94 -2.39 -0.02 0.31 16 32 H 0.09 0.17 7.79 -2.39 -0.02 0.15 16 33 H 0.06 0.31 7.92 -2.39 -0.02 0.29 16 34 H 0.14 2.26 6.11 -2.91 -0.02 2.24 16 35 H 0.11 3.36 7.64 -2.91 -0.02 3.34 16 36 H 0.41 7.91 6.62 -92.71 -0.61 7.29 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 2.47 8.14 -2.39 -0.02 2.46 16 41 H 0.05 2.34 4.50 -2.39 -0.01 2.33 16 42 H 0.05 1.78 7.07 -2.39 -0.02 1.76 16 43 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 44 H 0.03 1.30 7.93 -2.39 -0.02 1.28 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.15 1.79 6.39 -2.91 -0.02 1.78 16 47 H 0.15 1.44 6.70 -2.91 -0.02 1.42 16 Total: -1.00 -86.03 366.22 2.25 -83.78 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.27 Total: 15.51 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.79 Total: 7.19 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -6.41 Total: -128.60 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.06 Total: -27.33 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.67 Total: 49.45 kcal Total: -86.03 2.25 -83.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009337676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.786 kcal (2) G-P(sol) polarization free energy of solvation -86.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds