Wall clock time and date at job start Tue Mar 31 2020 11:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00281 * 2 1 4 4 C 1.38875 * 110.99889 * 123.96153 * 2 1 3 5 5 C 1.38965 * 120.17152 * 299.99443 * 4 2 1 6 6 C 1.37957 * 120.06356 * 180.02562 * 5 4 2 7 7 C 1.38613 * 120.42076 * 0.22663 * 6 5 4 8 8 C 1.37747 * 120.35173 * 359.49395 * 7 6 5 9 9 C 1.39733 * 119.92950 * 0.52576 * 8 7 6 10 10 C 1.47430 * 120.21052 * 179.74749 * 9 8 7 11 11 O 1.21601 * 119.99991 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99665 * 359.97438 * 10 9 8 13 13 C 1.46503 * 119.99927 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.49717 * 325.06285 * 13 12 10 15 15 C 1.53036 * 109.50035 * 204.99993 * 13 12 10 16 16 C 1.53042 * 109.54089 * 178.68014 * 15 13 12 17 17 C 1.53192 * 109.30819 * 61.36947 * 16 15 13 18 18 N 1.46921 * 108.77606 * 305.36335 * 17 16 15 19 19 C 1.36939 * 120.63085 * 233.61336 * 18 17 16 20 20 H 1.08004 * 120.00089 * 152.79608 * 19 18 17 21 21 C 1.38814 * 120.00158 * 332.78807 * 19 18 17 22 22 N 1.31608 * 119.99986 * 159.75545 * 21 19 18 23 23 Si 1.86802 * 119.99587 * 339.76097 * 21 19 18 24 24 H 1.48501 * 109.47141 * 94.89687 * 23 21 19 25 25 H 1.48501 * 109.46463 * 214.89310 * 23 21 19 26 26 H 1.48499 * 109.47428 * 334.88879 * 23 21 19 27 27 C 1.46923 * 118.73888 * 53.61091 * 18 17 16 28 28 H 1.09004 * 109.47034 * 296.04530 * 1 2 3 29 29 H 1.09002 * 109.47112 * 56.04216 * 1 2 3 30 30 H 1.08999 * 109.47653 * 176.04452 * 1 2 3 31 31 H 1.08998 * 109.47122 * 183.95233 * 3 2 1 32 32 H 1.08999 * 109.47144 * 303.95412 * 3 2 1 33 33 H 1.08999 * 109.47180 * 63.95510 * 3 2 1 34 34 H 1.08001 * 119.96210 * 359.97438 * 5 4 2 35 35 H 1.08000 * 119.78757 * 179.97438 * 6 5 4 36 36 H 1.07994 * 119.81964 * 179.72557 * 7 6 5 37 37 H 1.08002 * 120.03459 * 180.23658 * 8 7 6 38 38 H 0.96997 * 120.00463 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.46357 * 298.70552 * 15 13 12 40 40 H 1.09005 * 109.45812 * 58.67746 * 15 13 12 41 41 H 1.09000 * 109.49626 * 181.31393 * 16 15 13 42 42 H 1.08990 * 109.50042 * 301.41835 * 16 15 13 43 43 H 1.09007 * 109.58958 * 65.15151 * 17 16 15 44 44 H 1.08998 * 109.58664 * 185.57657 * 17 16 15 45 45 H 0.97005 * 120.00402 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.59181 * 186.60487 * 27 18 17 47 47 H 1.08993 * 109.58992 * 66.18049 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9666 -0.7243 1.0754 5 6 1.6562 -0.3458 2.3759 6 6 2.1522 -1.0666 3.4425 7 6 2.9657 -2.1681 3.2276 8 6 3.2797 -2.5620 1.9456 9 6 2.7857 -1.8423 0.8544 10 6 3.1224 -2.2551 -0.5203 11 8 2.6900 -1.6263 -1.4670 12 7 3.9094 -3.3294 -0.7276 13 6 4.2436 -3.7399 -2.0936 14 1 3.3938 -3.5490 -2.7490 15 6 4.5766 -5.2335 -2.1111 16 6 4.8939 -5.6704 -3.5431 17 6 6.1151 -4.8968 -4.0500 18 7 5.8586 -3.4579 -3.9010 19 6 5.9909 -2.6113 -4.9692 20 1 5.4159 -1.6979 -5.0088 21 6 6.8641 -2.9270 -6.0011 22 7 6.7189 -2.3637 -7.1816 23 14 8.2453 -4.1516 -5.7140 24 1 7.8059 -5.5032 -6.1445 25 1 9.4381 -3.7453 -6.4996 26 1 8.5898 -4.1796 -4.2698 27 6 5.4575 -2.9445 -2.5842 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5898 1.9162 -0.8524 33 1 1.7044 1.8722 0.9233 34 1 1.0267 0.5140 2.5518 35 1 1.9085 -0.7682 4.4515 36 1 3.3522 -2.7227 4.0698 37 1 3.9108 -3.4234 1.7840 38 1 4.2540 -3.8312 0.0276 39 1 5.4414 -5.4202 -1.4744 40 1 3.7229 -5.8003 -1.7395 41 1 5.1082 -6.7391 -3.5583 42 1 4.0385 -5.4612 -4.1853 43 1 6.9921 -5.1742 -3.4650 44 1 6.2855 -5.1307 -5.1009 45 1 7.3288 -2.5845 -7.9028 46 1 5.1938 -1.8901 -2.6678 47 1 6.2807 -3.0625 -1.8796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009719957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:48 Heat of formation + Delta-G solvation = 41.386328 kcal Electronic energy + Delta-G solvation = -27191.831421 eV Core-core repulsion = 23568.999098 eV Total energy + Delta-G solvation = -3622.832323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53715 -38.93682 -37.31634 -36.71005 -34.25821 -32.53002 -31.46242 -30.77671 -30.09660 -28.90366 -27.66379 -25.25445 -24.86889 -24.00009 -22.46470 -21.93020 -21.05871 -20.13072 -19.61941 -17.86741 -16.74554 -16.55285 -16.06737 -15.43102 -15.25296 -15.04070 -14.99116 -14.57528 -14.53955 -13.88646 -13.82538 -13.62219 -13.37681 -13.16488 -12.78010 -12.68134 -12.47714 -12.33147 -12.21041 -12.03392 -11.96565 -11.76081 -11.47250 -11.43464 -11.05851 -10.85758 -10.68961 -10.08689 -9.90617 -9.69456 -9.54006 -9.38597 -9.21529 -8.93333 -8.84812 -8.42602 -8.33142 -6.90122 -5.86703 -3.22881 0.73058 1.02080 3.00299 3.35952 3.40606 3.52317 3.55213 3.73306 3.82836 4.56111 4.58934 4.61698 4.75673 4.97905 5.05194 5.11063 5.15034 5.15801 5.26038 5.34484 5.37892 5.44260 5.46361 5.49698 5.58191 5.60918 5.78329 5.86111 5.89679 5.96696 6.01541 6.08799 6.14980 6.16148 6.26082 6.36016 6.48372 6.49972 6.66323 6.68197 6.72573 6.83443 6.87838 7.03245 7.28809 7.86134 8.04268 8.41915 8.65129 9.02495 9.79633 10.15690 11.29403 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.003409 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.982249 B = 8210.443778 C = 8987.115938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.492 5.492 3 C 0.036 3.964 4 C 0.147 3.853 5 C -0.161 4.161 6 C -0.091 4.091 7 C -0.132 4.132 8 C -0.084 4.084 9 C -0.108 4.108 10 C 0.547 3.453 11 O -0.488 6.488 12 N -0.727 5.727 13 C 0.129 3.871 14 H 0.090 0.910 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.123 3.877 18 N -0.602 5.602 19 C -0.256 4.256 20 H 0.087 0.913 21 C 0.022 3.978 22 N -0.909 5.909 23 Si 0.883 3.117 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.270 1.270 27 C 0.146 3.854 28 H 0.024 0.976 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.390 0.610 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.026 0.974 44 H 0.073 0.927 45 H 0.262 0.738 46 H 0.067 0.933 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.326 -0.590 23.501 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.212 5.212 3 C -0.111 4.111 4 C 0.051 3.949 5 C -0.182 4.182 6 C -0.110 4.110 7 C -0.150 4.150 8 C -0.104 4.104 9 C -0.112 4.112 10 C 0.332 3.668 11 O -0.361 6.361 12 N -0.380 5.380 13 C 0.023 3.977 14 H 0.108 0.892 15 C -0.154 4.154 16 C -0.172 4.172 17 C -0.003 4.003 18 N -0.325 5.325 19 C -0.384 4.384 20 H 0.105 0.895 21 C -0.176 4.176 22 N -0.553 5.553 23 Si 0.713 3.287 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.195 1.195 27 C 0.018 3.982 28 H 0.043 0.957 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.224 0.776 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.439 -0.268 22.120 24.461 hybrid contribution 0.777 -0.582 1.258 1.589 sum -9.662 -0.850 23.379 25.311 Atomic orbital electron populations 1.22403 0.85781 1.02625 1.00405 1.59197 1.07970 1.13900 1.40088 1.22394 1.01387 0.86967 1.00338 1.18789 0.94200 0.93032 0.88852 1.21698 1.02283 1.01165 0.93031 1.21153 0.96259 0.94853 0.98751 1.21083 0.99314 0.97700 0.96867 1.21335 0.98174 0.98754 0.92088 1.20162 1.00484 0.96747 0.93835 1.17982 0.79420 0.80956 0.88419 1.90889 1.50857 1.51880 1.42463 1.46074 1.51951 1.30826 1.09157 1.21626 1.00147 0.94142 0.81739 0.89169 1.21679 1.00588 0.94888 0.98254 1.21999 1.00920 0.98856 0.95393 1.21389 0.94336 0.84603 0.99966 1.44293 1.80087 1.01949 1.06219 1.18976 1.19258 1.04308 0.95876 0.89540 1.25258 0.98400 0.98189 0.95777 1.69839 1.38312 1.46001 1.01102 0.86941 0.83302 0.80465 0.77954 1.21725 1.23257 1.19546 1.21215 0.92698 0.97511 0.86745 0.95723 0.90640 0.91359 0.91104 0.90584 0.95753 0.85827 0.85815 0.85465 0.85300 0.77634 0.92224 0.92502 0.92329 0.91392 0.95641 0.90921 0.92849 0.91408 0.96154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.34 60.06 0.56 0.94 16 2 N -0.49 -6.59 2.92 -186.64 -0.54 -7.14 16 3 C 0.04 0.41 9.38 60.06 0.56 0.97 16 4 C 0.15 1.84 4.72 -83.61 -0.39 1.45 16 5 C -0.16 -1.56 8.55 -39.42 -0.34 -1.90 16 6 C -0.09 -0.74 10.03 -39.55 -0.40 -1.13 16 7 C -0.13 -1.06 10.02 -39.62 -0.40 -1.45 16 8 C -0.08 -0.82 9.53 -39.20 -0.37 -1.19 16 9 C -0.11 -1.41 5.89 -104.80 -0.62 -2.02 16 10 C 0.55 8.82 7.73 -12.52 -0.10 8.72 16 11 O -0.49 -9.91 14.69 5.28 0.08 -9.83 16 12 N -0.73 -10.45 5.03 -54.76 -0.28 -10.73 16 13 C 0.13 2.26 2.61 -67.81 -0.18 2.08 16 14 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 15 C -0.12 -1.75 5.35 -26.69 -0.14 -1.89 16 16 C -0.13 -2.31 6.08 -26.61 -0.16 -2.47 16 17 C 0.12 2.70 4.19 -3.71 -0.02 2.68 16 18 N -0.60 -14.87 2.77 -172.32 -0.48 -15.34 16 19 C -0.26 -7.48 10.04 -15.06 -0.15 -7.63 16 20 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 21 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 22 N -0.91 -28.68 13.97 55.49 0.78 -27.91 16 23 Si 0.88 22.78 24.35 -169.99 -4.14 18.64 16 24 H -0.29 -7.17 6.70 56.52 0.38 -6.79 16 25 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 26 H -0.27 -6.81 6.45 56.52 0.36 -6.45 16 27 C 0.15 3.09 6.09 -3.71 -0.02 3.06 16 28 H 0.02 0.22 7.11 -51.93 -0.37 -0.15 16 29 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 33 H 0.02 0.23 7.33 -51.93 -0.38 -0.15 16 34 H 0.12 1.01 7.01 -52.49 -0.37 0.64 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.96 6.40 -52.49 -0.34 0.62 16 38 H 0.39 4.26 6.63 -40.82 -0.27 3.99 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.03 0.55 6.98 -51.92 -0.36 0.19 16 44 H 0.07 1.75 4.49 -51.93 -0.23 1.52 16 45 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 46 H 0.07 1.58 7.93 -51.93 -0.41 1.17 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -34.92 365.96 -8.71 -43.64 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.39 Total: 2.37 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.25 Total: 0.78 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.52 Total: -61.12 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.14 Total: 18.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.92 -8.71 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009719957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.022 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds