Wall clock time and date at job start Tue Mar 31 2020 11:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00281 * 2 1 4 4 C 1.38875 * 110.99889 * 123.96153 * 2 1 3 5 5 C 1.38965 * 120.17152 * 299.99443 * 4 2 1 6 6 C 1.37957 * 120.06356 * 180.02562 * 5 4 2 7 7 C 1.38613 * 120.42076 * 0.22663 * 6 5 4 8 8 C 1.37747 * 120.35173 * 359.49395 * 7 6 5 9 9 C 1.39733 * 119.92950 * 0.52576 * 8 7 6 10 10 C 1.47430 * 120.21052 * 179.74749 * 9 8 7 11 11 O 1.21601 * 119.99991 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99665 * 359.97438 * 10 9 8 13 13 C 1.46503 * 119.99927 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.49717 * 325.06285 * 13 12 10 15 15 C 1.53036 * 109.50035 * 204.99993 * 13 12 10 16 16 C 1.53042 * 109.54089 * 178.68014 * 15 13 12 17 17 C 1.53192 * 109.30819 * 61.36947 * 16 15 13 18 18 N 1.46921 * 108.77606 * 305.36335 * 17 16 15 19 19 C 1.36939 * 120.63085 * 233.61336 * 18 17 16 20 20 H 1.08004 * 120.00089 * 152.79608 * 19 18 17 21 21 C 1.38814 * 120.00158 * 332.78807 * 19 18 17 22 22 N 1.31608 * 119.99986 * 159.75545 * 21 19 18 23 23 Si 1.86802 * 119.99587 * 339.76097 * 21 19 18 24 24 H 1.48501 * 109.47141 * 94.89687 * 23 21 19 25 25 H 1.48501 * 109.46463 * 214.89310 * 23 21 19 26 26 H 1.48499 * 109.47428 * 334.88879 * 23 21 19 27 27 C 1.46923 * 118.73888 * 53.61091 * 18 17 16 28 28 H 1.09004 * 109.47034 * 296.04530 * 1 2 3 29 29 H 1.09002 * 109.47112 * 56.04216 * 1 2 3 30 30 H 1.08999 * 109.47653 * 176.04452 * 1 2 3 31 31 H 1.08998 * 109.47122 * 183.95233 * 3 2 1 32 32 H 1.08999 * 109.47144 * 303.95412 * 3 2 1 33 33 H 1.08999 * 109.47180 * 63.95510 * 3 2 1 34 34 H 1.08001 * 119.96210 * 359.97438 * 5 4 2 35 35 H 1.08000 * 119.78757 * 179.97438 * 6 5 4 36 36 H 1.07994 * 119.81964 * 179.72557 * 7 6 5 37 37 H 1.08002 * 120.03459 * 180.23658 * 8 7 6 38 38 H 0.96997 * 120.00463 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.46357 * 298.70552 * 15 13 12 40 40 H 1.09005 * 109.45812 * 58.67746 * 15 13 12 41 41 H 1.09000 * 109.49626 * 181.31393 * 16 15 13 42 42 H 1.08990 * 109.50042 * 301.41835 * 16 15 13 43 43 H 1.09007 * 109.58958 * 65.15151 * 17 16 15 44 44 H 1.08998 * 109.58664 * 185.57657 * 17 16 15 45 45 H 0.97005 * 120.00402 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.59181 * 186.60487 * 27 18 17 47 47 H 1.08993 * 109.58992 * 66.18049 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9666 -0.7243 1.0754 5 6 1.6562 -0.3458 2.3759 6 6 2.1522 -1.0666 3.4425 7 6 2.9657 -2.1681 3.2276 8 6 3.2797 -2.5620 1.9456 9 6 2.7857 -1.8423 0.8544 10 6 3.1224 -2.2551 -0.5203 11 8 2.6900 -1.6263 -1.4670 12 7 3.9094 -3.3294 -0.7276 13 6 4.2436 -3.7399 -2.0936 14 1 3.3938 -3.5490 -2.7490 15 6 4.5766 -5.2335 -2.1111 16 6 4.8939 -5.6704 -3.5431 17 6 6.1151 -4.8968 -4.0500 18 7 5.8586 -3.4579 -3.9010 19 6 5.9909 -2.6113 -4.9692 20 1 5.4159 -1.6979 -5.0088 21 6 6.8641 -2.9270 -6.0011 22 7 6.7189 -2.3637 -7.1816 23 14 8.2453 -4.1516 -5.7140 24 1 7.8059 -5.5032 -6.1445 25 1 9.4381 -3.7453 -6.4996 26 1 8.5898 -4.1796 -4.2698 27 6 5.4575 -2.9445 -2.5842 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5898 1.9162 -0.8524 33 1 1.7044 1.8722 0.9233 34 1 1.0267 0.5140 2.5518 35 1 1.9085 -0.7682 4.4515 36 1 3.3522 -2.7227 4.0698 37 1 3.9108 -3.4234 1.7840 38 1 4.2540 -3.8312 0.0276 39 1 5.4414 -5.4202 -1.4744 40 1 3.7229 -5.8003 -1.7395 41 1 5.1082 -6.7391 -3.5583 42 1 4.0385 -5.4612 -4.1853 43 1 6.9921 -5.1742 -3.4650 44 1 6.2855 -5.1307 -5.1009 45 1 7.3288 -2.5845 -7.9028 46 1 5.1938 -1.8901 -2.6678 47 1 6.2807 -3.0625 -1.8796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009719957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:47 Heat of formation + Delta-G solvation = 16.874592 kcal Electronic energy + Delta-G solvation = -27192.894330 eV Core-core repulsion = 23568.999098 eV Total energy + Delta-G solvation = -3623.895232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51153 -40.17724 -38.82942 -37.52515 -35.86677 -34.28125 -32.73308 -32.42124 -30.85356 -30.32953 -28.55686 -27.21958 -25.81644 -24.95998 -23.78291 -23.71452 -21.98520 -21.37624 -21.06378 -18.86596 -18.78134 -17.45625 -17.41281 -17.02463 -16.40102 -16.18582 -15.98189 -15.84107 -15.57828 -15.36303 -15.24956 -14.88502 -14.77673 -14.57074 -14.22041 -14.05663 -13.70103 -13.51165 -13.30255 -13.26563 -13.04079 -12.79060 -12.74969 -12.70438 -12.55509 -12.41189 -12.16712 -11.82868 -11.63804 -11.46474 -11.35042 -10.89264 -10.70215 -10.11771 -9.91480 -9.67533 -9.21546 -8.91838 -8.17690 -5.51759 -0.09162 0.31767 1.29867 1.41772 1.52385 2.03231 2.20272 2.41213 2.88390 2.91052 3.05459 3.36318 3.78372 3.86701 3.93357 4.05882 4.09688 4.13463 4.15861 4.30919 4.32780 4.34388 4.42500 4.48753 4.53787 4.60742 4.65309 4.67076 4.71884 4.87179 4.90352 4.91575 4.94685 4.99789 5.05849 5.13286 5.22164 5.29973 5.39937 5.44007 5.48005 5.60980 5.82518 5.84183 5.97718 6.10070 6.44656 6.74926 6.89550 7.47018 7.59928 7.97436 9.02943 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.003409 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.982249 B = 8210.443778 C = 8987.115938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.526 5.526 3 C 0.040 3.960 4 C 0.126 3.874 5 C -0.166 4.166 6 C -0.080 4.080 7 C -0.126 4.126 8 C -0.080 4.080 9 C -0.141 4.141 10 C 0.543 3.457 11 O -0.546 6.546 12 N -0.711 5.711 13 C 0.143 3.857 14 H 0.049 0.951 15 C -0.105 4.105 16 C -0.127 4.127 17 C 0.114 3.886 18 N -0.617 5.617 19 C -0.257 4.257 20 H 0.033 0.967 21 C -0.038 4.038 22 N -0.961 5.961 23 Si 0.961 3.039 24 H -0.267 1.267 25 H -0.310 1.310 26 H -0.254 1.254 27 C 0.148 3.852 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.412 0.588 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.025 0.975 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.619 -3.664 28.275 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.247 5.247 3 C -0.106 4.106 4 C 0.030 3.970 5 C -0.186 4.186 6 C -0.098 4.098 7 C -0.144 4.144 8 C -0.099 4.099 9 C -0.145 4.145 10 C 0.330 3.670 11 O -0.423 6.423 12 N -0.365 5.365 13 C 0.036 3.964 14 H 0.067 0.933 15 C -0.143 4.143 16 C -0.166 4.166 17 C -0.010 4.010 18 N -0.342 5.342 19 C -0.386 4.386 20 H 0.050 0.950 21 C -0.232 4.232 22 N -0.607 5.607 23 Si 0.788 3.212 24 H -0.194 1.194 25 H -0.239 1.239 26 H -0.178 1.178 27 C 0.021 3.979 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.181 0.819 37 H 0.170 0.830 38 H 0.250 0.750 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.740 -3.393 26.980 28.884 hybrid contribution 0.460 0.483 -0.154 0.685 sum -9.280 -2.910 26.826 28.534 Atomic orbital electron populations 1.22358 0.84862 1.02039 1.01509 1.59087 1.09141 1.14623 1.41857 1.22318 0.99932 0.86908 1.01466 1.19019 0.94907 0.93283 0.89783 1.21842 1.02646 1.01942 0.92148 1.21616 0.94583 0.93900 0.99737 1.21516 0.98310 0.97495 0.97033 1.21601 0.97675 0.98785 0.91803 1.20064 1.03126 0.98681 0.92651 1.18641 0.78487 0.80332 0.89497 1.90861 1.53119 1.53690 1.44601 1.45812 1.51489 1.30661 1.08536 1.21177 0.96616 0.95907 0.82685 0.93272 1.21643 1.03159 0.92209 0.97267 1.21930 0.97833 1.00520 0.96322 1.21558 0.97267 0.82981 0.99228 1.44358 1.80718 1.03039 1.06115 1.18780 1.18509 1.03650 0.97676 0.94961 1.26010 1.00832 1.01378 0.95020 1.69998 1.39531 1.48931 1.02254 0.85696 0.78522 0.78506 0.78448 1.19363 1.23935 1.17796 1.21252 0.94854 0.95909 0.85847 0.93313 0.90894 0.92561 0.93270 0.90896 0.93247 0.84457 0.82446 0.81876 0.83012 0.75046 0.89277 0.89189 0.88221 0.93478 0.93603 0.93297 0.92802 0.95627 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 9.34 127.69 1.19 2.06 16 2 N -0.53 -14.85 2.92 -744.40 -2.17 -17.02 16 3 C 0.04 0.98 9.38 127.69 1.20 2.18 16 4 C 0.13 3.12 4.72 38.71 0.18 3.31 16 5 C -0.17 -2.83 8.55 22.38 0.19 -2.64 16 6 C -0.08 -0.95 10.03 22.29 0.22 -0.72 16 7 C -0.13 -1.43 10.02 22.24 0.22 -1.21 16 8 C -0.08 -1.29 9.53 22.52 0.21 -1.08 16 9 C -0.14 -3.60 5.89 -19.98 -0.12 -3.72 16 10 C 0.54 18.10 7.73 86.66 0.67 18.77 16 11 O -0.55 -24.10 14.69 -4.03 -0.06 -24.16 16 12 N -0.71 -19.84 5.03 -445.43 -2.24 -22.08 16 13 C 0.14 4.99 2.61 45.07 0.12 5.11 16 14 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 15 C -0.10 -2.78 5.35 30.62 0.16 -2.62 16 16 C -0.13 -4.07 6.08 30.67 0.19 -3.89 16 17 C 0.11 4.80 4.19 86.36 0.36 5.16 16 18 N -0.62 -31.19 2.77 -699.10 -1.94 -33.13 16 19 C -0.26 -15.93 10.04 84.03 0.84 -15.09 16 20 H 0.03 2.29 8.06 -2.91 -0.02 2.26 16 21 C -0.04 -2.35 5.24 84.86 0.44 -1.91 16 22 N -0.96 -63.69 13.97 21.65 0.30 -63.39 16 23 Si 0.96 47.71 24.35 68.60 1.67 49.38 16 24 H -0.27 -12.26 6.70 99.48 0.67 -11.59 16 25 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 26 H -0.25 -11.80 6.45 99.48 0.64 -11.16 16 27 C 0.15 6.44 6.09 86.36 0.53 6.97 16 28 H 0.05 0.83 7.11 -2.38 -0.02 0.81 16 29 H 0.07 1.60 8.12 -2.39 -0.02 1.59 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 33 H 0.05 0.92 7.33 -2.39 -0.02 0.90 16 34 H 0.14 1.88 7.01 -2.91 -0.02 1.86 16 35 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 36 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.15 1.60 6.40 -2.91 -0.02 1.58 16 38 H 0.41 7.72 6.63 -92.71 -0.61 7.11 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.77 6.98 -2.38 -0.02 1.76 16 44 H 0.05 2.29 4.49 -2.39 -0.01 2.28 16 45 H 0.26 16.35 8.31 -92.70 -0.77 15.58 16 46 H 0.02 1.29 7.93 -2.39 -0.02 1.27 16 47 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -85.22 365.96 2.43 -82.79 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.25 Total: 16.93 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.62 Total: 10.68 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -6.05 Total: -135.63 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.06 Total: -24.16 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.67 Total: 49.38 kcal Total: -85.22 2.43 -82.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009719957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.665 kcal (2) G-P(sol) polarization free energy of solvation -85.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds