Wall clock time and date at job start Tue Mar 31 2020 11:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99894 * 2 1 4 4 C 1.46898 * 110.99782 * 123.95803 * 2 1 3 5 5 C 1.50700 * 109.47475 * 66.04384 * 4 2 1 6 6 C 1.38370 * 119.85136 * 89.99629 * 5 4 2 7 7 C 1.37956 * 120.14053 * 180.02562 * 6 5 4 8 8 C 1.39568 * 119.85533 * 0.02562 * 7 6 5 9 9 C 1.47845 * 120.14498 * 179.97438 * 8 7 6 10 10 O 1.21558 * 119.99819 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00285 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00139 * 179.97438 * 11 9 8 13 13 H 1.08999 * 110.64092 * 328.14250 * 12 11 9 14 14 C 1.55151 * 110.72144 * 204.99885 * 12 11 9 15 15 C 1.54907 * 101.58607 * 276.96274 * 14 12 11 16 16 N 1.47428 * 104.83214 * 322.99086 * 15 14 12 17 17 C 1.36935 * 125.64921 * 204.10557 * 16 15 14 18 18 H 1.07999 * 119.99866 * 169.96000 * 17 16 15 19 19 C 1.38813 * 119.99567 * 349.96481 * 17 16 15 20 20 N 1.31612 * 120.00563 * 350.42002 * 19 17 16 21 21 Si 1.86808 * 119.99594 * 170.42416 * 19 17 16 22 22 H 1.48505 * 109.46851 * 94.13632 * 21 19 17 23 23 H 1.48492 * 109.47053 * 214.13657 * 21 19 17 24 24 H 1.48500 * 109.46994 * 334.13721 * 21 19 17 25 25 C 1.47023 * 108.70231 * 24.12647 * 16 15 14 26 26 C 1.39572 * 119.71489 * 0.25361 * 8 7 6 27 27 C 1.37965 * 119.85002 * 359.46760 * 26 8 7 28 28 H 1.08993 * 109.46959 * 296.04821 * 1 2 3 29 29 H 1.09007 * 109.47053 * 56.04577 * 1 2 3 30 30 H 1.08996 * 109.47069 * 176.03929 * 1 2 3 31 31 H 1.09007 * 109.46450 * 183.95067 * 3 2 1 32 32 H 1.08989 * 109.47350 * 303.95119 * 3 2 1 33 33 H 1.08999 * 109.46667 * 63.95893 * 3 2 1 34 34 H 1.08999 * 109.47111 * 306.04035 * 4 2 1 35 35 H 1.09005 * 109.46963 * 186.04668 * 4 2 1 36 36 H 1.08000 * 119.92361 * 0.02951 * 6 5 4 37 37 H 1.07996 * 120.06986 * 180.02562 * 7 6 5 38 38 H 0.97000 * 120.00005 * 359.97438 * 11 9 8 39 39 H 1.09006 * 111.00475 * 35.03818 * 14 12 11 40 40 H 1.09004 * 111.00551 * 158.88857 * 14 12 11 41 41 H 1.09003 * 110.36577 * 81.82584 * 15 14 12 42 42 H 1.08997 * 110.36871 * 204.15042 * 15 14 12 43 43 H 0.97003 * 120.00613 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.88149 * 239.53021 * 25 16 15 45 45 H 1.08997 * 109.88502 * 118.35769 * 25 16 15 46 46 H 1.07998 * 120.07881 * 179.72730 * 26 8 7 47 47 H 1.08002 * 119.92704 * 180.27056 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6369 -2.2205 0.9728 6 6 2.4969 -3.0698 0.2993 7 6 2.1743 -4.4022 0.1445 8 6 0.9774 -4.8927 0.6686 9 6 0.6251 -6.3193 0.5060 10 8 1.3788 -7.0680 -0.0848 11 7 -0.5312 -6.7901 1.0137 12 6 -0.8806 -8.2036 0.8521 13 1 -0.4830 -8.5929 -0.0852 14 6 -2.4180 -8.4004 0.9201 15 6 -2.6577 -8.4518 2.4496 16 7 -1.4926 -9.1757 2.9901 17 6 -1.4592 -9.8638 4.1735 18 1 -0.6147 -10.4950 4.4075 19 6 -2.5110 -9.7503 5.0722 20 7 -3.4462 -8.8444 4.8799 21 14 -2.5991 -10.8834 6.5548 22 1 -1.9701 -10.2182 7.7242 23 1 -4.0198 -11.1862 6.8626 24 1 -1.8772 -12.1463 6.2562 25 6 -0.3723 -9.0358 2.0483 26 6 0.1117 -4.0294 1.3418 27 6 0.4488 -2.7003 1.4947 28 1 -0.3633 0.4512 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0710 31 1 3.0828 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3873 2.0627 35 1 3.0797 -0.6612 1.1756 36 1 3.4226 -2.6888 -0.1061 37 1 2.8466 -5.0642 -0.3810 38 1 -1.1322 -6.1929 1.4861 39 1 -2.9403 -7.5556 0.4710 40 1 -2.7135 -9.3367 0.4467 41 1 -2.7019 -7.4433 2.8608 42 1 -3.5772 -8.9934 2.6716 43 1 -4.1814 -8.7652 5.5078 44 1 -0.0511 -10.0194 1.7057 45 1 0.4571 -8.5205 2.5326 46 1 -0.8181 -4.4018 1.7458 47 1 -0.2182 -2.0321 2.0192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015858020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:07 Heat of formation + Delta-G solvation = 24.574649 kcal Electronic energy + Delta-G solvation = -26110.108633 eV Core-core repulsion = 22486.547301 eV Total energy + Delta-G solvation = -3623.561332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.26209 -39.02837 -37.43990 -36.83418 -33.88993 -32.35808 -31.54473 -30.99660 -29.16822 -27.94283 -27.74175 -26.84680 -24.51928 -23.47705 -22.68968 -21.68155 -20.46760 -20.24501 -19.75733 -17.90638 -16.80117 -16.32728 -15.95683 -15.82959 -15.61136 -14.94452 -14.71712 -14.67850 -14.55321 -14.28337 -13.81408 -13.65368 -13.47824 -12.99813 -12.79023 -12.72622 -12.48724 -12.33195 -12.06816 -12.00608 -11.84936 -11.66339 -11.47339 -11.13089 -11.06841 -10.85594 -10.78265 -10.42169 -10.09074 -9.99598 -9.70122 -9.65289 -9.07417 -9.03459 -8.72924 -8.62708 -8.55628 -6.81395 -5.76684 -3.08127 0.77099 1.28504 2.91364 3.38831 3.42751 3.45149 3.47399 3.63837 3.97191 4.43576 4.49486 4.58575 4.77634 4.80140 4.89518 4.98416 5.01612 5.12433 5.23520 5.25518 5.31445 5.35601 5.44036 5.46582 5.47537 5.49775 5.64064 5.70384 5.75250 5.84578 5.87947 6.16624 6.24297 6.29245 6.33833 6.36403 6.46083 6.54513 6.58655 6.62982 6.73834 6.77831 7.05454 7.42724 7.50999 7.75337 7.81517 8.24173 8.46613 9.18438 9.80070 10.47310 11.36866 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002611 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.348476 B =10722.131594 C =11362.264504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.090 3.910 5 C -0.061 4.061 6 C -0.108 4.108 7 C -0.061 4.061 8 C -0.126 4.126 9 C 0.556 3.444 10 O -0.545 6.545 11 N -0.704 5.704 12 C 0.131 3.869 13 H 0.091 0.909 14 C -0.156 4.156 15 C 0.172 3.828 16 N -0.602 5.602 17 C -0.226 4.226 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.126 3.874 26 C -0.084 4.084 27 C -0.121 4.121 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.400 0.600 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.024 0.976 42 H 0.071 0.929 43 H 0.252 0.748 44 H 0.033 0.967 45 H 0.027 0.973 46 H 0.129 0.871 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.289 19.211 -10.373 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.037 4.037 5 C -0.062 4.062 6 C -0.127 4.127 7 C -0.080 4.080 8 C -0.129 4.129 9 C 0.343 3.657 10 O -0.424 6.424 11 N -0.355 5.355 12 C 0.027 3.973 13 H 0.109 0.891 14 C -0.195 4.195 15 C 0.047 3.953 16 N -0.329 5.329 17 C -0.354 4.354 18 H 0.093 0.907 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.001 4.001 26 C -0.102 4.102 27 C -0.140 4.140 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.236 0.764 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.147 0.853 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.836 18.402 -11.036 22.843 hybrid contribution -0.714 0.191 1.946 2.082 sum 7.122 18.593 -9.090 21.887 Atomic orbital electron populations 1.22507 0.87048 1.03039 1.00423 1.61991 1.08435 1.13586 1.42556 1.22400 1.00838 0.88560 1.00621 1.21117 1.00679 0.89967 0.91911 1.19856 0.94497 0.94860 0.96949 1.20951 0.99936 0.92819 0.98967 1.21269 0.95147 0.95264 0.96346 1.20046 0.96856 0.93560 1.02478 1.18255 0.81461 0.87240 0.78772 1.90742 1.50031 1.58717 1.42860 1.45915 1.21371 1.11414 1.56752 1.21997 0.96333 0.79931 0.99078 0.89050 1.23349 0.93272 1.01392 1.01454 1.21413 0.92270 0.96056 0.85524 1.44498 1.06908 1.61116 1.20380 1.19035 1.04581 1.18972 0.92840 0.90650 1.24799 0.98330 0.98911 0.98409 1.69936 1.14269 1.34715 1.37856 0.86126 0.76911 0.80349 0.82524 1.21673 1.21625 1.20594 1.21705 0.91887 0.96403 0.90084 1.21344 0.98896 0.93346 0.96646 1.20964 0.96671 0.95440 1.00899 0.95518 0.91373 0.90596 0.91245 0.91188 0.95592 0.93607 0.89659 0.85431 0.84631 0.76411 0.91565 0.90531 0.95761 0.91074 0.93769 0.94959 0.95533 0.85344 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.13 60.07 0.55 0.68 16 2 N -0.54 -4.40 5.01 -252.72 -1.27 -5.67 16 3 C 0.02 0.15 9.57 60.07 0.57 0.72 16 4 C 0.09 0.72 5.11 -4.98 -0.03 0.70 16 5 C -0.06 -0.60 4.89 -104.53 -0.51 -1.11 16 6 C -0.11 -1.13 9.68 -39.64 -0.38 -1.52 16 7 C -0.06 -0.78 9.60 -39.19 -0.38 -1.15 16 8 C -0.13 -1.76 5.87 -104.97 -0.62 -2.37 16 9 C 0.56 9.36 7.77 -12.33 -0.10 9.27 16 10 O -0.54 -10.76 15.99 5.31 0.08 -10.68 16 11 N -0.70 -11.62 5.05 -52.97 -0.27 -11.89 16 12 C 0.13 2.40 3.32 -66.09 -0.22 2.18 16 13 H 0.09 1.64 7.55 -51.93 -0.39 1.25 16 14 C -0.16 -2.78 6.66 -24.59 -0.16 -2.94 16 15 C 0.17 3.99 5.39 -2.53 -0.01 3.97 16 16 N -0.60 -15.36 3.39 -170.07 -0.58 -15.94 16 17 C -0.23 -6.34 10.24 -15.06 -0.15 -6.50 16 18 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 19 C -0.01 -0.23 5.40 -17.43 -0.09 -0.32 16 20 N -0.92 -26.56 10.68 55.49 0.59 -25.97 16 21 Si 0.91 22.09 29.56 -169.99 -5.03 17.06 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 C 0.13 2.77 6.99 -3.06 -0.02 2.75 16 26 C -0.08 -0.99 9.54 -39.18 -0.37 -1.37 16 27 C -0.12 -1.24 7.94 -39.64 -0.31 -1.56 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.08 0.64 6.16 -51.93 -0.32 0.32 16 31 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 32 H 0.07 0.38 8.12 -51.94 -0.42 -0.04 16 33 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 34 H 0.05 0.35 8.06 -51.93 -0.42 -0.07 16 35 H 0.09 0.60 8.00 -51.93 -0.42 0.18 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.14 1.72 7.65 -52.49 -0.40 1.31 16 38 H 0.40 6.02 6.68 -40.82 -0.27 5.75 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.59 8.07 -51.93 -0.42 0.17 16 42 H 0.07 1.84 6.94 -51.93 -0.36 1.48 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.03 0.62 8.05 -51.93 -0.42 0.21 16 46 H 0.13 1.40 6.41 -52.49 -0.34 1.07 16 47 H 0.12 1.04 8.02 -52.49 -0.42 0.62 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -32.42 378.99 -10.51 -42.93 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.52 Total: 3.01 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.24 Total: 1.43 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -1.52 Total: -59.47 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.42 -10.51 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015858020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.506 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds