Wall clock time and date at job start Tue Mar 31 2020 11:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99894 * 2 1 4 4 C 1.46898 * 110.99782 * 123.95803 * 2 1 3 5 5 C 1.50700 * 109.47475 * 66.04384 * 4 2 1 6 6 C 1.38370 * 119.85136 * 89.99629 * 5 4 2 7 7 C 1.37956 * 120.14053 * 180.02562 * 6 5 4 8 8 C 1.39568 * 119.85533 * 0.02562 * 7 6 5 9 9 C 1.47845 * 120.14498 * 179.97438 * 8 7 6 10 10 O 1.21558 * 119.99819 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00285 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00139 * 179.97438 * 11 9 8 13 13 H 1.08999 * 110.64092 * 328.14250 * 12 11 9 14 14 C 1.55151 * 110.72144 * 204.99885 * 12 11 9 15 15 C 1.54907 * 101.58607 * 276.96274 * 14 12 11 16 16 N 1.47428 * 104.83214 * 322.99086 * 15 14 12 17 17 C 1.36935 * 125.64921 * 204.10557 * 16 15 14 18 18 H 1.07999 * 119.99866 * 169.96000 * 17 16 15 19 19 C 1.38813 * 119.99567 * 349.96481 * 17 16 15 20 20 N 1.31612 * 120.00563 * 350.42002 * 19 17 16 21 21 Si 1.86808 * 119.99594 * 170.42416 * 19 17 16 22 22 H 1.48505 * 109.46851 * 94.13632 * 21 19 17 23 23 H 1.48492 * 109.47053 * 214.13657 * 21 19 17 24 24 H 1.48500 * 109.46994 * 334.13721 * 21 19 17 25 25 C 1.47023 * 108.70231 * 24.12647 * 16 15 14 26 26 C 1.39572 * 119.71489 * 0.25361 * 8 7 6 27 27 C 1.37965 * 119.85002 * 359.46760 * 26 8 7 28 28 H 1.08993 * 109.46959 * 296.04821 * 1 2 3 29 29 H 1.09007 * 109.47053 * 56.04577 * 1 2 3 30 30 H 1.08996 * 109.47069 * 176.03929 * 1 2 3 31 31 H 1.09007 * 109.46450 * 183.95067 * 3 2 1 32 32 H 1.08989 * 109.47350 * 303.95119 * 3 2 1 33 33 H 1.08999 * 109.46667 * 63.95893 * 3 2 1 34 34 H 1.08999 * 109.47111 * 306.04035 * 4 2 1 35 35 H 1.09005 * 109.46963 * 186.04668 * 4 2 1 36 36 H 1.08000 * 119.92361 * 0.02951 * 6 5 4 37 37 H 1.07996 * 120.06986 * 180.02562 * 7 6 5 38 38 H 0.97000 * 120.00005 * 359.97438 * 11 9 8 39 39 H 1.09006 * 111.00475 * 35.03818 * 14 12 11 40 40 H 1.09004 * 111.00551 * 158.88857 * 14 12 11 41 41 H 1.09003 * 110.36577 * 81.82584 * 15 14 12 42 42 H 1.08997 * 110.36871 * 204.15042 * 15 14 12 43 43 H 0.97003 * 120.00613 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.88149 * 239.53021 * 25 16 15 45 45 H 1.08997 * 109.88502 * 118.35769 * 25 16 15 46 46 H 1.07998 * 120.07881 * 179.72730 * 26 8 7 47 47 H 1.08002 * 119.92704 * 180.27056 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6369 -2.2205 0.9728 6 6 2.4969 -3.0698 0.2993 7 6 2.1743 -4.4022 0.1445 8 6 0.9774 -4.8927 0.6686 9 6 0.6251 -6.3193 0.5060 10 8 1.3788 -7.0680 -0.0848 11 7 -0.5312 -6.7901 1.0137 12 6 -0.8806 -8.2036 0.8521 13 1 -0.4830 -8.5929 -0.0852 14 6 -2.4180 -8.4004 0.9201 15 6 -2.6577 -8.4518 2.4496 16 7 -1.4926 -9.1757 2.9901 17 6 -1.4592 -9.8638 4.1735 18 1 -0.6147 -10.4950 4.4075 19 6 -2.5110 -9.7503 5.0722 20 7 -3.4462 -8.8444 4.8799 21 14 -2.5991 -10.8834 6.5548 22 1 -1.9701 -10.2182 7.7242 23 1 -4.0198 -11.1862 6.8626 24 1 -1.8772 -12.1463 6.2562 25 6 -0.3723 -9.0358 2.0483 26 6 0.1117 -4.0294 1.3418 27 6 0.4488 -2.7003 1.4947 28 1 -0.3633 0.4512 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0710 31 1 3.0828 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3873 2.0627 35 1 3.0797 -0.6612 1.1756 36 1 3.4226 -2.6888 -0.1061 37 1 2.8466 -5.0642 -0.3810 38 1 -1.1322 -6.1929 1.4861 39 1 -2.9403 -7.5556 0.4710 40 1 -2.7135 -9.3367 0.4467 41 1 -2.7019 -7.4433 2.8608 42 1 -3.5772 -8.9934 2.6716 43 1 -4.1814 -8.7652 5.5078 44 1 -0.0511 -10.0194 1.7057 45 1 0.4571 -8.5205 2.5326 46 1 -0.8181 -4.4018 1.7458 47 1 -0.2182 -2.0321 2.0192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015858020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:06 Heat of formation + Delta-G solvation = 3.531795 kcal Electronic energy + Delta-G solvation = -26111.021120 eV Core-core repulsion = 22486.547301 eV Total energy + Delta-G solvation = -3624.473819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41444 -40.11002 -38.85664 -37.73703 -35.55445 -33.88352 -32.73428 -31.95818 -30.93929 -29.21137 -28.43952 -27.94013 -26.43105 -24.40412 -23.61549 -22.50772 -22.11638 -21.64523 -21.15653 -19.20153 -18.67809 -17.59329 -16.78150 -16.75900 -16.43997 -16.40965 -16.06902 -16.03217 -15.68910 -15.40930 -15.16084 -14.86375 -14.52655 -14.41218 -14.11996 -13.83450 -13.43575 -13.43476 -13.21172 -13.05312 -13.00475 -12.78292 -12.65245 -12.45871 -12.39250 -12.24737 -12.15277 -11.97678 -11.95105 -11.86633 -11.61133 -11.02398 -10.69446 -10.20693 -9.94715 -9.80790 -9.26934 -8.87762 -7.90291 -5.23900 -0.19751 0.41196 1.45634 1.46473 1.56457 1.78952 2.13283 2.48425 2.77473 3.24441 3.29404 3.57025 3.69300 3.74728 3.82433 3.88367 3.99672 4.03899 4.23232 4.27921 4.32855 4.40926 4.48132 4.59363 4.61460 4.63050 4.69115 4.77373 4.78718 4.86397 4.89529 4.96665 5.01903 5.04801 5.06751 5.07685 5.28932 5.37714 5.42964 5.53337 5.54889 5.58301 5.71009 5.89471 6.03838 6.09927 6.18904 6.50719 7.07640 7.15209 7.73587 8.39855 9.21486 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002611 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.348476 B =10722.131594 C =11362.264504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.556 5.556 3 C 0.024 3.976 4 C 0.092 3.908 5 C -0.053 4.053 6 C -0.106 4.106 7 C -0.072 4.072 8 C -0.150 4.150 9 C 0.555 3.445 10 O -0.580 6.580 11 N -0.700 5.700 12 C 0.144 3.856 13 H 0.101 0.899 14 C -0.134 4.134 15 C 0.178 3.822 16 N -0.621 5.621 17 C -0.248 4.248 18 H 0.071 0.929 19 C -0.058 4.058 20 N -0.942 5.942 21 Si 0.976 3.024 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.273 1.273 25 C 0.125 3.875 26 C -0.086 4.086 27 C -0.119 4.119 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.408 0.592 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.008 0.992 42 H 0.039 0.961 43 H 0.250 0.750 44 H 0.032 0.968 45 H 0.008 0.992 46 H 0.135 0.865 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.514 21.041 -10.663 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.280 5.280 3 C -0.124 4.124 4 C -0.035 4.035 5 C -0.053 4.053 6 C -0.125 4.125 7 C -0.091 4.091 8 C -0.153 4.153 9 C 0.344 3.656 10 O -0.462 6.462 11 N -0.351 5.351 12 C 0.038 3.962 13 H 0.119 0.881 14 C -0.172 4.172 15 C 0.053 3.947 16 N -0.348 5.348 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.251 4.251 20 N -0.590 5.590 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.198 1.198 25 C -0.002 4.002 26 C -0.105 4.105 27 C -0.138 4.138 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.245 0.755 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.026 0.974 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.026 0.974 46 H 0.152 0.848 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.062 20.255 -11.337 24.572 hybrid contribution -0.727 -0.287 2.039 2.184 sum 7.335 19.968 -9.299 23.216 Atomic orbital electron populations 1.22503 0.86979 1.02495 1.01080 1.61985 1.08686 1.14761 1.42586 1.22439 1.01281 0.87528 1.01117 1.21148 1.01587 0.88479 0.92333 1.20163 0.93836 0.95987 0.95362 1.21174 1.00827 0.91849 0.98614 1.21326 0.94789 0.96280 0.96656 1.19900 0.98320 0.92103 1.04970 1.18729 0.80766 0.88352 0.77736 1.90711 1.50990 1.59942 1.44518 1.45846 1.21685 1.10736 1.56832 1.21782 0.96352 0.80481 0.97538 0.88099 1.23203 0.93069 1.03478 0.97495 1.21262 0.90315 0.94179 0.88971 1.44761 1.08670 1.61006 1.20314 1.19330 1.04711 1.19454 0.94165 0.91085 1.25578 0.98080 1.00356 1.01126 1.70105 1.14530 1.35797 1.38612 0.85122 0.76736 0.78673 0.79102 1.21408 1.21502 1.19795 1.21790 0.90619 0.96974 0.90780 1.21447 0.98814 0.93897 0.96324 1.21214 0.97125 0.94921 1.00515 0.94825 0.90821 0.91698 0.90512 0.90708 0.95068 0.92790 0.88390 0.83306 0.85392 0.75531 0.88243 0.89395 0.97415 0.94245 0.94093 0.94995 0.97443 0.84762 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.13 127.69 1.17 1.39 16 2 N -0.56 -7.58 5.01 -953.47 -4.78 -12.35 16 3 C 0.02 0.23 9.57 127.69 1.22 1.45 16 4 C 0.09 1.20 5.11 85.56 0.44 1.64 16 5 C -0.05 -0.92 4.89 -19.81 -0.10 -1.02 16 6 C -0.11 -2.05 9.68 22.23 0.22 -1.84 16 7 C -0.07 -1.78 9.60 22.52 0.22 -1.57 16 8 C -0.15 -4.15 5.87 -20.09 -0.12 -4.26 16 9 C 0.55 18.82 7.77 86.79 0.67 19.50 16 10 O -0.58 -23.32 15.99 -3.90 -0.06 -23.38 16 11 N -0.70 -22.94 5.05 -439.78 -2.22 -25.16 16 12 C 0.14 5.18 3.32 46.18 0.15 5.33 16 13 H 0.10 3.52 7.55 -2.39 -0.02 3.50 16 14 C -0.13 -4.60 6.66 31.98 0.21 -4.39 16 15 C 0.18 8.30 5.39 86.85 0.47 8.76 16 16 N -0.62 -32.26 3.39 -691.97 -2.35 -34.61 16 17 C -0.25 -14.16 10.24 84.03 0.86 -13.30 16 18 H 0.07 4.00 7.85 -2.91 -0.02 3.98 16 19 C -0.06 -3.26 5.40 84.86 0.46 -2.80 16 20 N -0.94 -55.22 10.68 21.65 0.23 -54.99 16 21 Si 0.98 45.78 29.56 68.60 2.03 47.80 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.12 5.58 6.99 86.73 0.61 6.18 16 26 C -0.09 -1.96 9.54 22.53 0.21 -1.75 16 27 C -0.12 -2.21 7.94 22.23 0.18 -2.03 16 28 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.85 8.12 -2.38 -0.02 0.83 16 30 H 0.06 0.97 6.16 -2.39 -0.01 0.96 16 31 H 0.08 0.62 8.12 -2.38 -0.02 0.60 16 32 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 33 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.05 0.64 8.06 -2.39 -0.02 0.62 16 35 H 0.10 1.05 8.00 -2.38 -0.02 1.03 16 36 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.13 3.31 7.65 -2.91 -0.02 3.29 16 38 H 0.41 12.07 6.68 -92.71 -0.62 11.45 16 39 H 0.10 2.79 8.14 -2.38 -0.02 2.78 16 40 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 41 H 0.01 0.39 8.07 -2.39 -0.02 0.37 16 42 H 0.04 2.08 6.94 -2.39 -0.02 2.06 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.01 0.36 8.05 -2.39 -0.02 0.34 16 46 H 0.13 2.81 6.41 -2.91 -0.02 2.79 16 47 H 0.15 2.06 8.02 -2.91 -0.02 2.03 16 Total: -1.00 -70.71 378.99 0.06 -70.65 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.34 Total: 20.73 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 6.87 Total: 11.30 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -9.12 Total: -127.11 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.06 Total: -23.38 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.71 0.06 -70.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015858020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.184 kcal (2) G-P(sol) polarization free energy of solvation -70.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds