Wall clock time and date at job start Tue Mar 31 2020 11:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00182 * 2 1 4 4 C 1.46900 * 110.99980 * 123.95190 * 2 1 3 5 5 C 1.50697 * 109.47265 * 169.99997 * 4 2 1 6 6 C 1.38387 * 119.92572 * 90.00313 * 5 4 2 7 7 C 1.38334 * 120.29091 * 179.97438 * 6 5 4 8 8 C 1.37981 * 120.14715 * 359.97389 * 7 6 5 9 9 C 1.39561 * 119.84859 * 0.02562 * 8 7 6 10 10 C 1.47849 * 120.14101 * 179.97438 * 9 8 7 11 11 O 1.21551 * 119.99734 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00053 * 359.97438 * 10 9 8 13 13 C 1.46495 * 120.00234 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.91616 * 31.09979 * 13 12 10 15 15 C 1.55157 * 111.00828 * 155.00372 * 13 12 10 16 16 C 1.54325 * 102.94374 * 153.57764 * 15 13 12 17 17 N 1.47015 * 107.27065 * 337.80787 * 16 15 13 18 18 C 1.36944 * 125.65004 * 178.98904 * 17 16 15 19 19 H 1.07997 * 120.00070 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99655 * 359.97135 * 18 17 16 21 21 N 1.31617 * 120.00068 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46839 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47181 * 120.00043 * 22 20 18 25 25 H 1.48497 * 109.47665 * 240.00201 * 22 20 18 26 26 C 1.47425 * 108.70882 * 358.94051 * 17 16 15 27 27 C 1.37938 * 119.92822 * 270.25529 * 5 4 2 28 28 H 1.08995 * 109.47889 * 296.05177 * 1 2 3 29 29 H 1.09005 * 109.47006 * 56.04839 * 1 2 3 30 30 H 1.09004 * 109.47117 * 176.04670 * 1 2 3 31 31 H 1.08999 * 109.47127 * 183.95067 * 3 2 1 32 32 H 1.09008 * 109.47009 * 303.94866 * 3 2 1 33 33 H 1.08997 * 109.47268 * 63.94538 * 3 2 1 34 34 H 1.09001 * 109.47031 * 49.99488 * 4 2 1 35 35 H 1.09004 * 109.47066 * 289.99999 * 4 2 1 36 36 H 1.08001 * 119.85159 * 359.97438 * 6 5 4 37 37 H 1.07995 * 119.92809 * 179.97438 * 7 6 5 38 38 H 1.07993 * 120.07832 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00256 * 0.02562 * 12 10 9 40 40 H 1.08996 * 110.71539 * 271.94075 * 15 13 12 41 41 H 1.08993 * 110.71794 * 35.21100 * 15 13 12 42 42 H 1.09000 * 109.88274 * 97.22627 * 16 15 13 43 43 H 1.08998 * 109.88226 * 218.38672 * 16 15 13 44 44 H 0.97001 * 120.00422 * 180.02562 * 21 20 18 45 45 H 1.08999 * 110.36633 * 265.29871 * 26 17 16 46 46 H 1.08996 * 110.37033 * 142.96251 * 26 17 16 47 47 H 1.08002 * 120.07358 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4817 -0.9525 0.9729 6 6 4.3570 -0.0165 1.4953 7 6 5.7228 -0.1805 1.3490 8 6 6.2211 -1.2802 0.6808 9 6 5.3437 -2.2278 0.1517 10 6 5.8706 -3.4082 -0.5660 11 8 5.1040 -4.2317 -1.0262 12 7 7.2006 -3.5706 -0.7107 13 6 7.7227 -4.7405 -1.4212 14 1 7.0307 -5.0645 -2.1985 15 6 9.1275 -4.4508 -2.0128 16 6 9.7696 -5.8525 -2.0811 17 7 9.0608 -6.7048 -1.1154 18 6 9.3147 -8.0305 -0.8839 19 1 8.7358 -8.5710 -0.1497 20 6 10.3162 -8.6794 -1.5930 21 7 11.0220 -8.0205 -2.4875 22 14 10.6621 -10.4878 -1.2779 23 1 9.7367 -10.9939 -0.2325 24 1 10.4593 -11.2565 -2.5321 25 1 12.0649 -10.6508 -0.8188 26 6 8.0321 -5.8959 -0.4366 27 6 3.9665 -2.0531 0.2973 28 1 -0.3635 0.4513 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8526 33 1 1.7043 1.8724 0.9232 34 1 1.5088 -1.7406 1.1757 35 1 1.7975 -0.2247 2.0628 36 1 3.9721 0.8457 2.0195 37 1 6.4006 0.5537 1.7586 38 1 7.2875 -1.4073 0.5676 39 1 7.8123 -2.9133 -0.3437 40 1 9.0443 -4.0158 -3.0087 41 1 9.6970 -3.7976 -1.3518 42 1 9.6613 -6.2613 -3.0857 43 1 10.8250 -5.7902 -1.8158 44 1 11.7215 -8.4741 -2.9833 45 1 8.4191 -5.5004 0.5025 46 1 7.1372 -6.4921 -0.2583 47 1 3.2821 -2.7805 -0.1138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016333667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:11 Heat of formation + Delta-G solvation = 26.401078 kcal Electronic energy + Delta-G solvation = -25853.845873 eV Core-core repulsion = 22230.363740 eV Total energy + Delta-G solvation = -3623.482132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.33680 -39.00030 -37.39954 -36.92409 -34.09641 -32.39131 -31.64590 -31.17849 -29.12630 -27.95816 -27.35447 -26.86427 -24.72300 -23.56409 -22.94926 -21.51763 -20.43352 -20.35151 -19.76831 -17.74653 -16.82775 -16.46371 -16.01702 -15.83819 -15.65834 -15.36933 -14.85237 -14.61352 -14.56018 -14.27345 -14.01390 -13.76239 -13.14278 -12.86374 -12.75321 -12.63178 -12.43633 -12.35711 -12.17570 -12.15419 -11.90899 -11.79521 -11.66051 -11.19302 -10.99515 -10.89327 -10.74776 -10.34782 -10.05467 -9.88517 -9.75134 -9.64045 -9.15667 -9.11639 -8.72978 -8.67002 -8.57400 -6.81924 -5.69548 -3.02968 0.70955 1.12950 2.85241 3.31305 3.42636 3.48319 3.50858 3.58324 3.91348 4.38560 4.50857 4.55240 4.65675 4.76827 4.81568 4.95808 4.97293 5.04836 5.11553 5.20599 5.27760 5.33752 5.38207 5.46544 5.50972 5.56560 5.60595 5.64858 5.75932 5.77294 5.81961 6.11947 6.15417 6.20745 6.27929 6.34175 6.43914 6.56861 6.60711 6.62931 6.68363 6.72377 7.00173 7.55785 7.59725 7.71940 7.83999 8.26397 8.40834 9.23862 9.83686 10.48646 11.42479 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029254 B = 0.002250 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.914698 B =12443.203371 C =12819.849568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.020 3.980 4 C 0.094 3.906 5 C -0.091 4.091 6 C -0.093 4.093 7 C -0.128 4.128 8 C -0.085 4.085 9 C -0.127 4.127 10 C 0.554 3.446 11 O -0.535 6.535 12 N -0.711 5.711 13 C 0.127 3.873 14 H 0.098 0.902 15 C -0.150 4.150 16 C 0.179 3.821 17 N -0.604 5.604 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.129 3.871 27 C -0.039 4.039 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.396 0.604 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.252 0.748 45 H 0.020 0.980 46 H 0.043 0.957 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.487 22.505 7.744 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.128 4.128 4 C -0.033 4.033 5 C -0.091 4.091 6 C -0.112 4.112 7 C -0.146 4.146 8 C -0.104 4.104 9 C -0.130 4.130 10 C 0.340 3.660 11 O -0.413 6.413 12 N -0.361 5.361 13 C 0.022 3.978 14 H 0.116 0.884 15 C -0.189 4.189 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.353 4.353 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.002 3.998 27 C -0.058 4.058 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.231 0.769 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.062 0.938 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.739 21.489 6.886 27.512 hybrid contribution 0.391 -0.135 1.064 1.141 sum -15.348 21.354 7.949 27.473 Atomic orbital electron populations 1.22401 0.86883 1.02593 1.00513 1.61962 1.07862 1.14071 1.42703 1.22483 1.01575 0.88470 1.00299 1.21068 0.91312 0.99266 0.91668 1.19638 0.94967 0.95213 0.99288 1.21200 0.93331 0.98124 0.98535 1.21034 0.95305 0.98128 1.00100 1.21356 0.99464 0.93506 0.96111 1.20060 0.94450 0.96251 1.02232 1.18260 0.82614 0.85355 0.79721 1.90785 1.57116 1.44375 1.48991 1.45933 1.06388 1.26176 1.57643 1.22344 0.95382 0.84970 0.95127 0.88378 1.23188 0.94659 1.01010 0.99997 1.21149 0.94944 0.84039 0.94463 1.44405 1.37600 1.07076 1.44015 1.19126 1.14306 0.83924 1.17961 0.90315 1.24811 0.98587 0.98424 0.98775 1.69956 1.24716 1.34779 1.27695 0.86014 0.77651 0.84549 0.77389 1.20481 1.21728 1.21788 1.21829 0.92680 0.91615 0.93724 1.21128 0.94092 0.96442 0.94154 0.95666 0.91170 0.91075 0.90822 0.91374 0.95716 0.89514 0.93730 0.86110 0.85433 0.85510 0.76897 0.91540 0.92075 0.93202 0.93551 0.93796 0.96269 0.93843 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.06 0.57 0.73 16 2 N -0.54 -4.54 5.01 -252.72 -1.27 -5.81 16 3 C 0.02 0.14 9.13 60.06 0.55 0.69 16 4 C 0.09 0.76 5.11 -4.98 -0.03 0.74 16 5 C -0.09 -0.87 4.88 -104.68 -0.51 -1.38 16 6 C -0.09 -0.76 7.96 -39.49 -0.31 -1.07 16 7 C -0.13 -1.04 10.03 -39.64 -0.40 -1.44 16 8 C -0.09 -0.84 9.54 -39.18 -0.37 -1.21 16 9 C -0.13 -1.61 5.87 -104.97 -0.62 -2.22 16 10 C 0.55 8.86 7.77 -12.33 -0.10 8.76 16 11 O -0.54 -10.67 15.99 5.32 0.09 -10.58 16 12 N -0.71 -10.64 5.15 -52.67 -0.27 -10.91 16 13 C 0.13 2.36 3.42 -65.78 -0.23 2.14 16 14 H 0.10 2.03 7.54 -51.93 -0.39 1.64 16 15 C -0.15 -2.72 6.60 -24.90 -0.16 -2.89 16 16 C 0.18 4.34 5.37 -3.07 -0.02 4.33 16 17 N -0.60 -15.85 3.39 -170.07 -0.58 -16.43 16 18 C -0.22 -6.44 10.28 -15.06 -0.15 -6.59 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.36 10.31 55.49 0.57 -26.79 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 C 0.13 2.84 6.93 -2.52 -0.02 2.82 16 27 C -0.04 -0.47 9.24 -39.19 -0.36 -0.83 16 28 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.56 6.16 -51.93 -0.32 0.24 16 32 H 0.07 0.44 8.12 -51.92 -0.42 0.01 16 33 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 34 H 0.09 0.68 8.01 -51.93 -0.42 0.27 16 35 H 0.04 0.31 8.06 -51.93 -0.42 -0.11 16 36 H 0.12 0.72 8.03 -52.49 -0.42 0.30 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.13 1.00 6.40 -52.49 -0.34 0.67 16 39 H 0.40 4.67 6.60 -40.82 -0.27 4.40 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 42 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 43 H 0.05 1.23 7.50 -51.93 -0.39 0.84 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.14 1.77 7.65 -52.49 -0.40 1.37 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -33.66 378.54 -10.53 -44.19 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.51 Total: 0.94 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.25 Total: 2.19 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -1.54 Total: -59.93 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.66 -10.53 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016333667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.593 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds