Wall clock time and date at job start Tue Mar 31 2020 11:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00182 * 2 1 4 4 C 1.46900 * 110.99980 * 123.95190 * 2 1 3 5 5 C 1.50697 * 109.47265 * 169.99997 * 4 2 1 6 6 C 1.38387 * 119.92572 * 90.00313 * 5 4 2 7 7 C 1.38334 * 120.29091 * 179.97438 * 6 5 4 8 8 C 1.37981 * 120.14715 * 359.97389 * 7 6 5 9 9 C 1.39561 * 119.84859 * 0.02562 * 8 7 6 10 10 C 1.47849 * 120.14101 * 179.97438 * 9 8 7 11 11 O 1.21551 * 119.99734 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00053 * 359.97438 * 10 9 8 13 13 C 1.46495 * 120.00234 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.91616 * 31.09979 * 13 12 10 15 15 C 1.55157 * 111.00828 * 155.00372 * 13 12 10 16 16 C 1.54325 * 102.94374 * 153.57764 * 15 13 12 17 17 N 1.47015 * 107.27065 * 337.80787 * 16 15 13 18 18 C 1.36944 * 125.65004 * 178.98904 * 17 16 15 19 19 H 1.07997 * 120.00070 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99655 * 359.97135 * 18 17 16 21 21 N 1.31617 * 120.00068 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46839 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47181 * 120.00043 * 22 20 18 25 25 H 1.48497 * 109.47665 * 240.00201 * 22 20 18 26 26 C 1.47425 * 108.70882 * 358.94051 * 17 16 15 27 27 C 1.37938 * 119.92822 * 270.25529 * 5 4 2 28 28 H 1.08995 * 109.47889 * 296.05177 * 1 2 3 29 29 H 1.09005 * 109.47006 * 56.04839 * 1 2 3 30 30 H 1.09004 * 109.47117 * 176.04670 * 1 2 3 31 31 H 1.08999 * 109.47127 * 183.95067 * 3 2 1 32 32 H 1.09008 * 109.47009 * 303.94866 * 3 2 1 33 33 H 1.08997 * 109.47268 * 63.94538 * 3 2 1 34 34 H 1.09001 * 109.47031 * 49.99488 * 4 2 1 35 35 H 1.09004 * 109.47066 * 289.99999 * 4 2 1 36 36 H 1.08001 * 119.85159 * 359.97438 * 6 5 4 37 37 H 1.07995 * 119.92809 * 179.97438 * 7 6 5 38 38 H 1.07993 * 120.07832 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00256 * 0.02562 * 12 10 9 40 40 H 1.08996 * 110.71539 * 271.94075 * 15 13 12 41 41 H 1.08993 * 110.71794 * 35.21100 * 15 13 12 42 42 H 1.09000 * 109.88274 * 97.22627 * 16 15 13 43 43 H 1.08998 * 109.88226 * 218.38672 * 16 15 13 44 44 H 0.97001 * 120.00422 * 180.02562 * 21 20 18 45 45 H 1.08999 * 110.36633 * 265.29871 * 26 17 16 46 46 H 1.08996 * 110.37033 * 142.96251 * 26 17 16 47 47 H 1.08002 * 120.07358 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4817 -0.9525 0.9729 6 6 4.3570 -0.0165 1.4953 7 6 5.7228 -0.1805 1.3490 8 6 6.2211 -1.2802 0.6808 9 6 5.3437 -2.2278 0.1517 10 6 5.8706 -3.4082 -0.5660 11 8 5.1040 -4.2317 -1.0262 12 7 7.2006 -3.5706 -0.7107 13 6 7.7227 -4.7405 -1.4212 14 1 7.0307 -5.0645 -2.1985 15 6 9.1275 -4.4508 -2.0128 16 6 9.7696 -5.8525 -2.0811 17 7 9.0608 -6.7048 -1.1154 18 6 9.3147 -8.0305 -0.8839 19 1 8.7358 -8.5710 -0.1497 20 6 10.3162 -8.6794 -1.5930 21 7 11.0220 -8.0205 -2.4875 22 14 10.6621 -10.4878 -1.2779 23 1 9.7367 -10.9939 -0.2325 24 1 10.4593 -11.2565 -2.5321 25 1 12.0649 -10.6508 -0.8188 26 6 8.0321 -5.8959 -0.4366 27 6 3.9665 -2.0531 0.2973 28 1 -0.3635 0.4513 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8526 33 1 1.7043 1.8724 0.9232 34 1 1.5088 -1.7406 1.1757 35 1 1.7975 -0.2247 2.0628 36 1 3.9721 0.8457 2.0195 37 1 6.4006 0.5537 1.7586 38 1 7.2875 -1.4073 0.5676 39 1 7.8123 -2.9133 -0.3437 40 1 9.0443 -4.0158 -3.0087 41 1 9.6970 -3.7976 -1.3518 42 1 9.6613 -6.2613 -3.0857 43 1 10.8250 -5.7902 -1.8158 44 1 11.7215 -8.4741 -2.9833 45 1 8.4191 -5.5004 0.5025 46 1 7.1372 -6.4921 -0.2583 47 1 3.2821 -2.7805 -0.1138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016333667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:10 Heat of formation + Delta-G solvation = 3.429245 kcal Electronic energy + Delta-G solvation = -25854.842006 eV Core-core repulsion = 22230.363740 eV Total energy + Delta-G solvation = -3624.478266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39288 -40.04753 -38.85561 -37.78950 -35.71279 -33.95680 -32.69874 -32.10867 -30.95858 -28.92885 -28.45818 -27.67863 -26.57583 -24.75836 -23.59781 -22.33348 -22.05881 -21.89527 -21.10538 -19.12806 -18.47209 -17.65076 -16.93273 -16.74347 -16.48264 -16.42601 -16.17668 -16.07353 -15.77284 -15.43264 -15.24599 -14.73595 -14.53917 -14.21212 -14.00981 -13.78088 -13.63384 -13.43258 -13.20728 -12.96736 -12.93781 -12.82084 -12.79359 -12.49604 -12.42271 -12.36444 -12.13750 -12.00584 -11.87572 -11.83328 -11.59727 -11.02591 -10.74161 -10.23152 -9.86224 -9.82414 -9.25288 -8.93796 -7.87973 -5.24299 -0.13148 0.39065 1.44758 1.46359 1.56778 1.82399 2.04842 2.49046 2.78657 3.25897 3.30565 3.58070 3.65410 3.72468 3.88093 3.95969 4.02975 4.14163 4.16960 4.21792 4.32248 4.36805 4.46142 4.55955 4.57991 4.63982 4.70449 4.72953 4.77665 4.84555 4.91974 4.95665 5.03276 5.03929 5.06133 5.06294 5.35667 5.40912 5.43050 5.49269 5.55088 5.62781 5.72244 5.92726 6.06061 6.10902 6.16942 6.53381 7.07629 7.19106 7.72576 8.36085 9.22346 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029254 B = 0.002250 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.914698 B =12443.203371 C =12819.849568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.565 5.565 3 C 0.021 3.979 4 C 0.095 3.905 5 C -0.092 4.092 6 C -0.082 4.082 7 C -0.121 4.121 8 C -0.083 4.083 9 C -0.149 4.149 10 C 0.552 3.448 11 O -0.586 6.586 12 N -0.695 5.695 13 C 0.145 3.855 14 H 0.074 0.926 15 C -0.127 4.127 16 C 0.184 3.816 17 N -0.626 5.626 18 C -0.246 4.246 19 H 0.077 0.923 20 C -0.064 4.064 21 N -0.948 5.948 22 Si 0.981 3.019 23 H -0.269 1.269 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.128 3.872 27 C -0.058 4.058 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.416 0.584 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.013 0.987 43 H 0.020 0.980 44 H 0.249 0.751 45 H 0.034 0.966 46 H 0.023 0.977 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.483 25.441 9.558 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.289 5.289 3 C -0.127 4.127 4 C -0.032 4.032 5 C -0.093 4.093 6 C -0.100 4.100 7 C -0.138 4.138 8 C -0.101 4.101 9 C -0.152 4.152 10 C 0.342 3.658 11 O -0.467 6.467 12 N -0.347 5.347 13 C 0.038 3.962 14 H 0.092 0.908 15 C -0.166 4.166 16 C 0.059 3.941 17 N -0.353 5.353 18 C -0.375 4.375 19 H 0.095 0.905 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.809 3.191 23 H -0.193 1.193 24 H -0.218 1.218 25 H -0.214 1.214 26 C 0.001 3.999 27 C -0.078 4.078 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.166 0.834 39 H 0.254 0.746 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.032 0.968 43 H 0.038 0.962 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.739 24.479 8.730 30.383 hybrid contribution 0.315 -0.978 0.546 1.163 sum -15.424 23.501 9.276 29.602 Atomic orbital electron populations 1.22409 0.85995 1.02609 1.01281 1.61938 1.08886 1.15002 1.43108 1.22486 1.01182 0.87856 1.01185 1.21054 0.90376 0.99315 0.92421 1.19795 0.96126 0.94617 0.98749 1.21581 0.93297 0.98056 0.97072 1.21448 0.95849 0.97810 0.98713 1.21605 1.00088 0.93061 0.95375 1.19826 0.95074 0.96125 1.04217 1.18861 0.82281 0.85776 0.78918 1.90757 1.58282 1.46447 1.51178 1.45646 1.06612 1.25276 1.57183 1.21831 0.95300 0.85249 0.93791 0.90799 1.23008 0.93636 0.97731 1.02218 1.20952 0.94079 0.87025 0.92076 1.44690 1.38775 1.07096 1.44733 1.19455 1.14461 0.85484 1.18088 0.90502 1.25666 0.98560 1.02727 0.98771 1.70162 1.24977 1.36215 1.28365 0.84975 0.77528 0.79327 0.77268 1.19343 1.21776 1.21365 1.21931 0.90931 0.92166 0.94831 1.21071 0.93792 0.97333 0.95600 0.94555 0.90703 0.91481 0.91325 0.91108 0.94295 0.90257 0.91944 0.83155 0.81940 0.83406 0.74555 0.89242 0.88727 0.96835 0.96191 0.94164 0.94824 0.95829 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.57 127.69 1.22 1.51 16 2 N -0.57 -8.69 5.01 -953.47 -4.78 -13.47 16 3 C 0.02 0.24 9.13 127.69 1.17 1.41 16 4 C 0.10 1.41 5.11 85.56 0.44 1.85 16 5 C -0.09 -1.62 4.88 -19.90 -0.10 -1.72 16 6 C -0.08 -1.02 7.96 22.33 0.18 -0.84 16 7 C -0.12 -1.44 10.03 22.23 0.22 -1.22 16 8 C -0.08 -1.37 9.54 22.53 0.21 -1.15 16 9 C -0.15 -3.68 5.87 -20.09 -0.12 -3.80 16 10 C 0.55 17.81 7.77 86.79 0.67 18.48 16 11 O -0.59 -24.53 15.99 -3.88 -0.06 -24.59 16 12 N -0.70 -20.00 5.15 -438.82 -2.26 -22.26 16 13 C 0.14 5.38 3.42 46.39 0.16 5.54 16 14 H 0.07 3.15 7.54 -2.39 -0.02 3.13 16 15 C -0.13 -4.46 6.60 31.78 0.21 -4.25 16 16 C 0.18 9.12 5.37 86.73 0.47 9.59 16 17 N -0.63 -33.71 3.39 -691.99 -2.35 -36.06 16 18 C -0.25 -14.45 10.28 84.03 0.86 -13.58 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.06 -3.75 5.49 84.86 0.47 -3.29 16 21 N -0.95 -57.73 10.31 21.65 0.22 -57.50 16 22 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 26 C 0.13 5.72 6.93 86.86 0.60 6.33 16 27 C -0.06 -1.42 9.24 22.53 0.21 -1.21 16 28 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.07 0.79 8.12 -2.38 -0.02 0.77 16 30 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.07 0.85 6.16 -2.39 -0.01 0.83 16 32 H 0.07 0.77 8.12 -2.38 -0.02 0.75 16 33 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.08 1.25 8.01 -2.39 -0.02 1.23 16 35 H 0.06 0.69 8.06 -2.38 -0.02 0.67 16 36 H 0.15 1.03 8.03 -2.91 -0.02 1.01 16 37 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.15 1.73 6.40 -2.91 -0.02 1.71 16 39 H 0.42 8.59 6.60 -92.71 -0.61 7.98 16 40 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.09 2.72 8.00 -2.39 -0.02 2.70 16 42 H 0.01 0.75 7.38 -2.39 -0.02 0.73 16 43 H 0.02 1.08 7.50 -2.39 -0.02 1.06 16 44 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 45 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.11 3.18 7.65 -2.91 -0.02 3.16 16 Total: -1.00 -77.25 378.54 0.03 -77.22 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.35 Total: 13.97 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.87 Total: 13.64 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -9.16 Total: -129.29 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.06 Total: -24.59 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -77.25 0.03 -77.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016333667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.652 kcal (2) G-P(sol) polarization free energy of solvation -77.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds