Wall clock time and date at job start Tue Mar 31 2020 11:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00608 * 2 1 4 4 C 1.46903 * 111.00029 * 123.95935 * 2 1 3 5 5 C 1.50696 * 109.47308 * 66.03914 * 4 2 1 6 6 C 1.37970 * 120.07453 * 259.97878 * 5 4 2 7 7 C 1.38342 * 120.14523 * 179.97438 * 6 5 4 8 8 C 1.38380 * 120.29005 * 0.02750 * 7 6 5 9 9 C 1.37934 * 120.14666 * 359.73887 * 8 7 6 10 10 C 1.39563 * 120.07233 * 80.00260 * 5 4 2 11 11 C 1.47848 * 120.14181 * 359.95809 * 10 5 4 12 12 O 1.21548 * 120.00123 * 359.97438 * 11 10 5 13 13 N 1.34771 * 119.99628 * 180.02562 * 11 10 5 14 14 C 1.46508 * 119.99819 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.88326 * 31.11931 * 14 13 11 16 16 C 1.55156 * 111.00165 * 154.99602 * 14 13 11 17 17 C 1.54327 * 102.94244 * 153.57583 * 16 14 13 18 18 N 1.47026 * 107.26677 * 337.80858 * 17 16 14 19 19 C 1.36944 * 125.64585 * 178.91804 * 18 17 16 20 20 H 1.07998 * 119.99618 * 174.86859 * 19 18 17 21 21 C 1.38817 * 119.99798 * 354.87234 * 19 18 17 22 22 N 1.31618 * 120.00181 * 7.06105 * 21 19 18 23 23 Si 1.86799 * 119.99440 * 187.06117 * 21 19 18 24 24 H 1.48499 * 109.46825 * 94.99129 * 23 21 19 25 25 H 1.48499 * 109.46723 * 214.98454 * 23 21 19 26 26 H 1.48496 * 109.47556 * 334.98678 * 23 21 19 27 27 C 1.47424 * 108.70570 * 358.93637 * 18 17 16 28 28 H 1.09004 * 109.46681 * 296.04940 * 1 2 3 29 29 H 1.09002 * 109.46869 * 56.04313 * 1 2 3 30 30 H 1.08990 * 109.47628 * 176.04432 * 1 2 3 31 31 H 1.08999 * 109.47319 * 183.95848 * 3 2 1 32 32 H 1.08999 * 109.46739 * 303.95886 * 3 2 1 33 33 H 1.09000 * 109.46611 * 63.95579 * 3 2 1 34 34 H 1.09002 * 109.46907 * 306.03693 * 4 2 1 35 35 H 1.09004 * 109.47189 * 186.04332 * 4 2 1 36 36 H 1.08000 * 119.93099 * 0.02718 * 6 5 4 37 37 H 1.07999 * 119.85730 * 180.02562 * 7 6 5 38 38 H 1.08001 * 119.92574 * 180.02562 * 8 7 6 39 39 H 1.08008 * 120.07445 * 180.27506 * 9 8 7 40 40 H 0.97002 * 120.00210 * 0.27104 * 13 11 10 41 41 H 1.08998 * 110.72251 * 271.93458 * 16 14 13 42 42 H 1.08999 * 110.72198 * 35.04069 * 16 14 13 43 43 H 1.09001 * 109.88188 * 97.22396 * 17 16 14 44 44 H 1.08996 * 109.88350 * 218.39069 * 17 16 14 45 45 H 0.97000 * 119.99740 * 179.97438 * 22 21 19 46 46 H 1.08999 * 110.36785 * 265.29444 * 27 18 17 47 47 H 1.09002 * 110.36366 * 142.96573 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6368 -2.2205 0.9728 6 6 0.5656 -2.7508 1.6620 7 6 0.2348 -4.0856 1.5114 8 6 0.9750 -4.8976 0.6702 9 6 2.0453 -4.3788 -0.0283 10 6 2.3877 -3.0340 0.1231 11 6 3.5366 -2.4723 -0.6188 12 8 3.8286 -1.2995 -0.4898 13 7 4.2595 -3.2604 -1.4389 14 6 5.3976 -2.7037 -2.1746 15 1 5.8695 -1.8997 -1.6098 16 6 6.4249 -3.8106 -2.5304 17 6 7.1129 -3.2507 -3.7933 18 7 6.1944 -2.2715 -4.3927 19 6 6.4401 -1.5323 -5.5191 20 1 5.6673 -0.8984 -5.9281 21 6 7.6824 -1.5979 -6.1350 22 7 8.5764 -2.4711 -5.7220 23 14 8.0851 -0.4468 -7.5500 24 1 8.8005 0.7459 -7.0295 25 1 8.9478 -1.1521 -8.5316 26 1 6.8274 -0.0192 -8.2137 27 6 4.9655 -2.2169 -3.5803 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0251 -0.0709 31 1 3.0828 1.3431 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7045 1.8722 0.9233 34 1 1.5612 -0.3873 2.0628 35 1 3.0797 -0.6613 1.1756 36 1 -0.0164 -2.1224 2.3198 37 1 -0.6049 -4.4958 2.0528 38 1 0.7113 -5.9387 0.5567 39 1 2.6195 -5.0125 -0.6880 40 1 4.0236 -4.1953 -1.5455 41 1 7.1465 -3.9408 -1.7239 42 1 5.9186 -4.7509 -2.7486 43 1 8.0485 -2.7626 -3.5202 44 1 7.3060 -4.0584 -4.4992 45 1 9.4444 -2.5172 -6.1527 46 1 4.2068 -2.8805 -3.9949 47 1 4.5899 -1.1949 -3.5289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016340307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:18 Heat of formation + Delta-G solvation = 36.227744 kcal Electronic energy + Delta-G solvation = -26969.020303 eV Core-core repulsion = 23345.964286 eV Total energy + Delta-G solvation = -3623.056016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42674 -38.58496 -37.09537 -36.91075 -34.00343 -32.13693 -31.80662 -31.01214 -29.07675 -27.55260 -27.26702 -26.64121 -24.59097 -23.63009 -22.54372 -21.32149 -20.50067 -20.13859 -19.82835 -17.74833 -16.80033 -16.23085 -15.85743 -15.55687 -15.47298 -15.00803 -14.67287 -14.53188 -14.41984 -14.28576 -13.97013 -13.55899 -12.93962 -12.80023 -12.61759 -12.36876 -12.33821 -12.15189 -12.09073 -11.77992 -11.73744 -11.60394 -11.51749 -11.13499 -10.93880 -10.86277 -10.69494 -10.27031 -10.05229 -9.84175 -9.69406 -9.32228 -9.13148 -8.98163 -8.58542 -8.51388 -8.21415 -6.78809 -5.68715 -3.00461 0.78458 1.13247 2.99882 3.40590 3.45104 3.50026 3.51778 3.76968 4.19844 4.54897 4.59613 4.61446 4.69454 4.86078 5.07230 5.17791 5.26423 5.28304 5.34770 5.40064 5.48815 5.49691 5.59405 5.62868 5.69714 5.72581 5.81188 5.82491 5.87070 5.93512 6.08264 6.11798 6.21503 6.25270 6.37072 6.39081 6.47350 6.67788 6.69645 6.79814 7.06346 7.09185 7.14727 7.56356 7.63870 7.80555 7.87778 8.29011 8.55459 9.25900 9.86210 10.51895 11.43661 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.003232 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.600720 B = 8661.614990 C = 9769.353574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.523 5.523 3 C 0.034 3.966 4 C 0.089 3.911 5 C -0.023 4.023 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.129 4.129 9 C -0.089 4.089 10 C -0.109 4.109 11 C 0.554 3.446 12 O -0.513 6.513 13 N -0.715 5.715 14 C 0.131 3.869 15 H 0.097 0.903 16 C -0.150 4.150 17 C 0.179 3.821 18 N -0.604 5.604 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.131 3.869 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.016 0.984 34 H 0.029 0.971 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.393 0.607 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.252 0.748 46 H 0.018 0.982 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.770 -3.636 17.280 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.246 5.246 3 C -0.114 4.114 4 C -0.038 4.038 5 C -0.024 4.024 6 C -0.145 4.145 7 C -0.119 4.119 8 C -0.147 4.147 9 C -0.108 4.108 10 C -0.112 4.112 11 C 0.341 3.659 12 O -0.389 6.389 13 N -0.366 5.366 14 C 0.026 3.974 15 H 0.115 0.885 16 C -0.189 4.189 17 C 0.054 3.946 18 N -0.331 5.331 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.003 3.997 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.228 0.772 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.035 0.965 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.190 -2.950 16.764 23.491 hybrid contribution -0.272 0.321 -0.145 0.445 sum -16.462 -2.629 16.619 23.539 Atomic orbital electron populations 1.22463 0.88401 1.01989 0.99907 1.61755 1.06496 1.13856 1.42478 1.22306 1.01840 0.87877 0.99426 1.21269 1.03262 0.88619 0.90644 1.19868 0.93273 0.95499 0.93803 1.21041 0.97154 0.95629 1.00638 1.21268 0.99137 0.93682 0.97777 1.21080 0.95972 1.00112 0.97513 1.21362 0.96915 0.94171 0.98316 1.19911 0.97661 0.93910 0.99742 1.18148 0.82177 0.86120 0.79491 1.90721 1.68951 1.15436 1.63802 1.45958 1.31976 1.13220 1.45485 1.22266 0.85408 0.96795 0.92933 0.88504 1.23179 0.97949 0.97210 1.00543 1.21143 0.92334 0.92071 0.89065 1.44402 1.14067 1.46426 1.28222 1.19083 0.96996 1.18557 1.00756 0.90381 1.24812 0.96344 0.99354 0.99893 1.69963 1.06685 1.36455 1.43841 0.86111 0.77964 0.80394 0.81420 1.21603 1.21824 1.20626 1.21816 0.90299 0.98554 0.89012 0.96267 0.91630 0.91603 0.90443 0.91691 0.96500 0.95306 0.86904 0.85914 0.85821 0.85570 0.85528 0.77195 0.91694 0.92184 0.93142 0.93852 0.93791 0.96455 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.28 60.06 0.56 0.78 16 2 N -0.52 -6.93 4.30 -252.73 -1.09 -8.01 16 3 C 0.03 0.41 9.57 60.07 0.57 0.99 16 4 C 0.09 1.11 4.11 -4.98 -0.02 1.09 16 5 C -0.02 -0.27 4.61 -104.23 -0.48 -0.75 16 6 C -0.13 -1.18 8.72 -39.64 -0.35 -1.53 16 7 C -0.10 -0.82 10.04 -39.49 -0.40 -1.21 16 8 C -0.13 -1.09 10.03 -39.64 -0.40 -1.48 16 9 C -0.09 -0.90 9.54 -39.19 -0.37 -1.27 16 10 C -0.11 -1.38 5.87 -104.97 -0.62 -2.00 16 11 C 0.55 8.59 7.74 -12.33 -0.10 8.50 16 12 O -0.51 -9.34 12.39 5.32 0.07 -9.27 16 13 N -0.72 -10.62 5.15 -52.67 -0.27 -10.90 16 14 C 0.13 2.41 3.42 -65.78 -0.23 2.19 16 15 H 0.10 1.96 7.54 -51.93 -0.39 1.57 16 16 C -0.15 -2.72 6.60 -24.90 -0.16 -2.89 16 17 C 0.18 4.34 5.38 -3.06 -0.02 4.32 16 18 N -0.60 -15.86 3.39 -170.07 -0.58 -16.44 16 19 C -0.23 -6.47 10.27 -15.05 -0.15 -6.63 16 20 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 21 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 22 N -0.92 -27.30 10.36 55.49 0.57 -26.73 16 23 Si 0.91 22.52 29.56 -169.99 -5.02 17.50 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.13 2.88 6.93 -2.53 -0.02 2.86 16 28 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.07 0.71 6.65 -51.93 -0.35 0.37 16 31 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 32 H 0.06 0.76 8.12 -51.93 -0.42 0.33 16 33 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.03 0.31 7.98 -51.93 -0.41 -0.10 16 35 H 0.11 1.65 5.85 -51.93 -0.30 1.34 16 36 H 0.12 0.93 8.03 -52.49 -0.42 0.51 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 1.05 6.41 -52.48 -0.34 0.72 16 40 H 0.39 4.74 6.60 -40.82 -0.27 4.47 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 43 H 0.05 1.35 7.30 -51.93 -0.38 0.98 16 44 H 0.04 1.15 7.61 -51.93 -0.40 0.75 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -32.71 373.37 -10.40 -43.11 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.44 Total: 2.46 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.27 Total: 2.64 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -1.36 Total: -62.07 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.71 -10.40 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016340307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.338 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds