Wall clock time and date at job start Tue Mar 31 2020 11:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00608 * 2 1 4 4 C 1.46903 * 111.00029 * 123.95935 * 2 1 3 5 5 C 1.50696 * 109.47308 * 66.03914 * 4 2 1 6 6 C 1.37970 * 120.07453 * 259.97878 * 5 4 2 7 7 C 1.38342 * 120.14523 * 179.97438 * 6 5 4 8 8 C 1.38380 * 120.29005 * 0.02750 * 7 6 5 9 9 C 1.37934 * 120.14666 * 359.73887 * 8 7 6 10 10 C 1.39563 * 120.07233 * 80.00260 * 5 4 2 11 11 C 1.47848 * 120.14181 * 359.95809 * 10 5 4 12 12 O 1.21548 * 120.00123 * 359.97438 * 11 10 5 13 13 N 1.34771 * 119.99628 * 180.02562 * 11 10 5 14 14 C 1.46508 * 119.99819 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.88326 * 31.11931 * 14 13 11 16 16 C 1.55156 * 111.00165 * 154.99602 * 14 13 11 17 17 C 1.54327 * 102.94244 * 153.57583 * 16 14 13 18 18 N 1.47026 * 107.26677 * 337.80858 * 17 16 14 19 19 C 1.36944 * 125.64585 * 178.91804 * 18 17 16 20 20 H 1.07998 * 119.99618 * 174.86859 * 19 18 17 21 21 C 1.38817 * 119.99798 * 354.87234 * 19 18 17 22 22 N 1.31618 * 120.00181 * 7.06105 * 21 19 18 23 23 Si 1.86799 * 119.99440 * 187.06117 * 21 19 18 24 24 H 1.48499 * 109.46825 * 94.99129 * 23 21 19 25 25 H 1.48499 * 109.46723 * 214.98454 * 23 21 19 26 26 H 1.48496 * 109.47556 * 334.98678 * 23 21 19 27 27 C 1.47424 * 108.70570 * 358.93637 * 18 17 16 28 28 H 1.09004 * 109.46681 * 296.04940 * 1 2 3 29 29 H 1.09002 * 109.46869 * 56.04313 * 1 2 3 30 30 H 1.08990 * 109.47628 * 176.04432 * 1 2 3 31 31 H 1.08999 * 109.47319 * 183.95848 * 3 2 1 32 32 H 1.08999 * 109.46739 * 303.95886 * 3 2 1 33 33 H 1.09000 * 109.46611 * 63.95579 * 3 2 1 34 34 H 1.09002 * 109.46907 * 306.03693 * 4 2 1 35 35 H 1.09004 * 109.47189 * 186.04332 * 4 2 1 36 36 H 1.08000 * 119.93099 * 0.02718 * 6 5 4 37 37 H 1.07999 * 119.85730 * 180.02562 * 7 6 5 38 38 H 1.08001 * 119.92574 * 180.02562 * 8 7 6 39 39 H 1.08008 * 120.07445 * 180.27506 * 9 8 7 40 40 H 0.97002 * 120.00210 * 0.27104 * 13 11 10 41 41 H 1.08998 * 110.72251 * 271.93458 * 16 14 13 42 42 H 1.08999 * 110.72198 * 35.04069 * 16 14 13 43 43 H 1.09001 * 109.88188 * 97.22396 * 17 16 14 44 44 H 1.08996 * 109.88350 * 218.39069 * 17 16 14 45 45 H 0.97000 * 119.99740 * 179.97438 * 22 21 19 46 46 H 1.08999 * 110.36785 * 265.29444 * 27 18 17 47 47 H 1.09002 * 110.36366 * 142.96573 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6368 -2.2205 0.9728 6 6 0.5656 -2.7508 1.6620 7 6 0.2348 -4.0856 1.5114 8 6 0.9750 -4.8976 0.6702 9 6 2.0453 -4.3788 -0.0283 10 6 2.3877 -3.0340 0.1231 11 6 3.5366 -2.4723 -0.6188 12 8 3.8286 -1.2995 -0.4898 13 7 4.2595 -3.2604 -1.4389 14 6 5.3976 -2.7037 -2.1746 15 1 5.8695 -1.8997 -1.6098 16 6 6.4249 -3.8106 -2.5304 17 6 7.1129 -3.2507 -3.7933 18 7 6.1944 -2.2715 -4.3927 19 6 6.4401 -1.5323 -5.5191 20 1 5.6673 -0.8984 -5.9281 21 6 7.6824 -1.5979 -6.1350 22 7 8.5764 -2.4711 -5.7220 23 14 8.0851 -0.4468 -7.5500 24 1 8.8005 0.7459 -7.0295 25 1 8.9478 -1.1521 -8.5316 26 1 6.8274 -0.0192 -8.2137 27 6 4.9655 -2.2169 -3.5803 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0251 -0.0709 31 1 3.0828 1.3431 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7045 1.8722 0.9233 34 1 1.5612 -0.3873 2.0628 35 1 3.0797 -0.6613 1.1756 36 1 -0.0164 -2.1224 2.3198 37 1 -0.6049 -4.4958 2.0528 38 1 0.7113 -5.9387 0.5567 39 1 2.6195 -5.0125 -0.6880 40 1 4.0236 -4.1953 -1.5455 41 1 7.1465 -3.9408 -1.7239 42 1 5.9186 -4.7509 -2.7486 43 1 8.0485 -2.7626 -3.5202 44 1 7.3060 -4.0584 -4.4992 45 1 9.4444 -2.5172 -6.1527 46 1 4.2068 -2.8805 -3.9949 47 1 4.5899 -1.1949 -3.5289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016340307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:17 Heat of formation + Delta-G solvation = 14.734298 kcal Electronic energy + Delta-G solvation = -26969.952328 eV Core-core repulsion = 23345.964286 eV Total energy + Delta-G solvation = -3623.988042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44135 -39.80161 -38.55113 -37.90503 -35.58619 -33.86910 -32.61080 -32.10912 -30.88341 -28.86171 -28.41494 -27.72406 -26.46469 -24.68264 -23.37771 -22.47442 -22.11072 -21.46065 -21.25613 -19.10268 -18.49228 -17.42059 -16.83665 -16.67635 -16.53701 -16.45224 -15.99346 -15.94462 -15.53509 -15.39213 -15.20223 -14.85882 -14.33096 -14.08726 -13.95688 -13.70017 -13.67673 -13.37612 -13.22321 -12.95892 -12.93595 -12.80470 -12.66520 -12.48757 -12.44759 -12.32132 -12.08094 -12.02338 -11.87728 -11.82144 -11.56067 -10.70492 -10.50546 -10.06723 -9.83601 -9.68736 -9.13137 -8.91636 -7.88033 -5.22671 -0.03178 0.42181 1.44747 1.47537 1.56136 2.01361 2.18305 2.50434 2.86597 3.30801 3.31925 3.67492 3.71085 3.82186 3.86436 3.99318 4.08281 4.19876 4.22525 4.27715 4.35867 4.43248 4.53752 4.57390 4.60753 4.61884 4.73540 4.75022 4.83932 4.89978 4.94381 4.99006 4.99235 5.05411 5.10132 5.14981 5.41421 5.42216 5.54499 5.57833 5.60341 5.64920 5.73182 5.99256 6.15268 6.18272 6.25915 6.67946 7.08787 7.38620 7.74297 8.38457 9.22585 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.003232 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.600720 B = 8661.614990 C = 9769.353574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.549 5.549 3 C 0.038 3.962 4 C 0.094 3.906 5 C -0.039 4.039 6 C -0.127 4.127 7 C -0.090 4.090 8 C -0.126 4.126 9 C -0.091 4.091 10 C -0.135 4.135 11 C 0.549 3.451 12 O -0.548 6.548 13 N -0.704 5.704 14 C 0.152 3.848 15 H 0.075 0.925 16 C -0.128 4.128 17 C 0.184 3.816 18 N -0.626 5.626 19 C -0.248 4.248 20 H 0.076 0.924 21 C -0.060 4.060 22 N -0.946 5.946 23 Si 0.978 3.022 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.270 1.270 27 C 0.132 3.868 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.142 0.858 40 H 0.410 0.590 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.015 0.985 44 H 0.015 0.985 45 H 0.249 0.751 46 H 0.027 0.973 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.344 -5.303 18.644 27.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.110 4.110 4 C -0.033 4.033 5 C -0.040 4.040 6 C -0.145 4.145 7 C -0.108 4.108 8 C -0.144 4.144 9 C -0.109 4.109 10 C -0.138 4.138 11 C 0.338 3.662 12 O -0.426 6.426 13 N -0.357 5.357 14 C 0.046 3.954 15 H 0.093 0.907 16 C -0.167 4.167 17 C 0.059 3.941 18 N -0.353 5.353 19 C -0.377 4.377 20 H 0.094 0.906 21 C -0.254 4.254 22 N -0.595 5.595 23 Si 0.806 3.194 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.194 1.194 27 C 0.005 3.995 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.159 0.841 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.160 0.840 40 H 0.248 0.752 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.058 0.942 46 H 0.045 0.955 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -18.807 -4.647 18.151 26.547 hybrid contribution 0.436 0.823 -0.522 1.068 sum -18.371 -3.824 17.629 25.747 Atomic orbital electron populations 1.22432 0.86863 1.02223 1.00724 1.61718 1.08044 1.14068 1.43410 1.22209 1.00210 0.88190 1.00388 1.21125 1.01521 0.89636 0.91024 1.19937 0.94462 0.94921 0.94705 1.21258 0.96319 0.96663 1.00301 1.21705 0.99343 0.92914 0.96805 1.21473 0.94843 1.01617 0.96441 1.21587 0.97632 0.93066 0.98663 1.19754 0.97494 0.95435 1.01128 1.18736 0.82607 0.85720 0.79128 1.90723 1.69965 1.17085 1.64867 1.45707 1.30965 1.14033 1.44998 1.21715 0.86428 0.96410 0.90881 0.90692 1.22993 0.97936 0.97740 0.98026 1.20939 0.91657 0.90589 0.90891 1.44685 1.15659 1.46699 1.28228 1.19412 0.97390 1.19016 1.01897 0.90616 1.25644 0.96202 1.00841 1.02699 1.70165 1.06727 1.37591 1.44971 0.85077 0.77889 0.78138 0.78342 1.21450 1.21584 1.19435 1.21888 0.89104 0.97701 0.90797 0.94664 0.91610 0.91486 0.93041 0.91455 0.94789 0.93842 0.89902 0.84066 0.82532 0.82539 0.83987 0.75188 0.89363 0.89114 0.96672 0.96638 0.94173 0.95525 0.95888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.28 127.69 1.18 1.70 16 2 N -0.55 -14.62 4.30 -953.49 -4.10 -18.72 16 3 C 0.04 0.97 9.57 127.69 1.22 2.19 16 4 C 0.09 2.36 4.11 85.56 0.35 2.71 16 5 C -0.04 -0.87 4.61 -19.61 -0.09 -0.96 16 6 C -0.13 -1.99 8.72 22.23 0.19 -1.80 16 7 C -0.09 -1.06 10.04 22.33 0.22 -0.84 16 8 C -0.13 -1.58 10.03 22.23 0.22 -1.36 16 9 C -0.09 -1.58 9.54 22.52 0.21 -1.36 16 10 C -0.13 -3.27 5.87 -20.09 -0.12 -3.39 16 11 C 0.55 17.11 7.74 86.79 0.67 17.78 16 12 O -0.55 -20.89 12.39 -3.87 -0.05 -20.94 16 13 N -0.70 -20.36 5.15 -438.82 -2.26 -22.62 16 14 C 0.15 5.64 3.42 46.38 0.16 5.80 16 15 H 0.07 3.15 7.54 -2.39 -0.02 3.13 16 16 C -0.13 -4.55 6.60 31.78 0.21 -4.34 16 17 C 0.18 9.21 5.38 86.73 0.47 9.68 16 18 N -0.63 -33.91 3.39 -691.97 -2.35 -36.26 16 19 C -0.25 -14.67 10.27 84.03 0.86 -13.81 16 20 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 21 C -0.06 -3.55 5.48 84.86 0.46 -3.08 16 22 N -0.95 -57.73 10.36 21.65 0.22 -57.51 16 23 Si 0.98 47.17 29.56 68.60 2.03 49.20 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 C 0.13 5.95 6.93 86.85 0.60 6.55 16 28 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 1.30 8.12 -2.39 -0.02 1.29 16 30 H 0.07 1.33 6.65 -2.39 -0.02 1.32 16 31 H 0.05 1.54 8.12 -2.39 -0.02 1.53 16 32 H 0.07 1.62 8.12 -2.39 -0.02 1.60 16 33 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.04 0.91 7.98 -2.39 -0.02 0.89 16 35 H 0.08 2.57 5.85 -2.39 -0.01 2.55 16 36 H 0.14 1.63 8.03 -2.91 -0.02 1.61 16 37 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.14 1.89 6.41 -2.91 -0.02 1.88 16 40 H 0.41 8.97 6.60 -92.71 -0.61 8.36 16 41 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.09 2.70 8.00 -2.39 -0.02 2.68 16 43 H 0.02 0.85 7.30 -2.39 -0.02 0.83 16 44 H 0.02 0.85 7.61 -2.39 -0.02 0.83 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 46 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -75.02 373.37 0.69 -74.33 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.35 Total: 17.04 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 6.84 Total: 15.48 kcal Atomic # 7 Polarization: -126.62 SS G_CDS: -8.48 Total: -135.10 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -75.02 0.69 -74.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016340307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.060 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds