Wall clock time and date at job start Tue Mar 31 2020 11:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00171 * 2 1 4 4 C 1.46902 * 110.99974 * 123.95036 * 2 1 3 5 5 C 1.50702 * 109.46904 * 164.54508 * 4 2 1 6 6 C 1.37986 * 120.07285 * 106.10231 * 5 4 2 7 7 C 1.38328 * 120.14564 * 179.97438 * 6 5 4 8 8 C 1.38386 * 120.29138 * 0.30411 * 7 6 5 9 9 C 1.37935 * 120.14537 * 359.44129 * 8 7 6 10 10 C 1.39556 * 120.07482 * 286.12170 * 5 4 2 11 11 C 1.47838 * 120.14415 * 0.02562 * 10 5 4 12 12 O 1.21561 * 119.99978 * 354.79002 * 11 10 5 13 13 N 1.34772 * 120.00308 * 174.79679 * 11 10 5 14 14 C 1.46497 * 120.00206 * 180.02562 * 13 11 10 15 15 H 1.08993 * 110.88866 * 328.87428 * 14 13 11 16 16 C 1.55160 * 111.00439 * 204.99772 * 14 13 11 17 17 C 1.54329 * 102.93964 * 277.42734 * 16 14 13 18 18 N 1.47026 * 107.27131 * 337.80160 * 17 16 14 19 19 C 1.36936 * 125.64575 * 178.98663 * 18 17 16 20 20 H 1.08003 * 119.99662 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00171 * 359.97438 * 19 18 17 22 22 N 1.31619 * 119.99930 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99915 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47090 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47006 * 120.00119 * 23 21 19 26 26 H 1.48504 * 109.46790 * 239.99730 * 23 21 19 27 27 C 1.47420 * 108.70284 * 358.94844 * 18 17 16 28 28 H 1.09006 * 109.47443 * 296.05123 * 1 2 3 29 29 H 1.08999 * 109.47097 * 56.04885 * 1 2 3 30 30 H 1.08998 * 109.47188 * 176.04485 * 1 2 3 31 31 H 1.08998 * 109.47219 * 189.42557 * 3 2 1 32 32 H 1.09008 * 109.47053 * 309.42425 * 3 2 1 33 33 H 1.09000 * 109.47288 * 69.41990 * 3 2 1 34 34 H 1.08996 * 109.46711 * 44.54545 * 4 2 1 35 35 H 1.08997 * 109.47084 * 284.54468 * 4 2 1 36 36 H 1.08000 * 119.92254 * 0.02562 * 6 5 4 37 37 H 1.07998 * 119.85820 * 180.02562 * 7 6 5 38 38 H 1.08006 * 119.92413 * 179.70250 * 8 7 6 39 39 H 1.07994 * 120.07456 * 180.27727 * 9 8 7 40 40 H 0.97005 * 120.00096 * 359.97438 * 13 11 10 41 41 H 1.09003 * 110.72048 * 35.78543 * 16 14 13 42 42 H 1.08997 * 110.72675 * 159.06286 * 16 14 13 43 43 H 1.09000 * 109.88258 * 97.22681 * 17 16 14 44 44 H 1.08998 * 109.87903 * 218.38615 * 17 16 14 45 45 H 0.97005 * 119.99462 * 180.02562 * 22 21 19 46 46 H 1.09010 * 110.36352 * 265.28794 * 27 18 17 47 47 H 1.08991 * 110.36983 * 142.96314 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4539 -1.0678 0.9081 6 6 4.4211 -0.3875 1.6193 7 6 5.7603 -0.6638 1.4101 8 6 6.1395 -1.6186 0.4830 9 6 5.1826 -2.3095 -0.2309 10 6 3.8294 -2.0357 -0.0246 11 6 2.7985 -2.7677 -0.7908 12 8 1.6209 -2.5962 -0.5430 13 7 3.1644 -3.6252 -1.7640 14 6 2.1429 -4.3501 -2.5237 15 1 1.2643 -4.5427 -1.9081 16 6 2.7145 -5.6702 -3.1052 17 6 3.4232 -5.2020 -4.3937 18 7 2.8209 -3.9180 -4.7812 19 6 3.1841 -3.1601 -5.8623 20 1 2.6776 -2.2275 -6.0626 21 6 4.2032 -3.5905 -6.7008 22 7 4.8200 -4.7273 -6.4569 23 14 4.6991 -2.5562 -8.1752 24 1 3.8578 -1.3337 -8.2277 25 1 6.1275 -2.1698 -8.0508 26 1 4.5058 -3.3435 -9.4195 27 6 1.7606 -3.5820 -3.8135 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0721 1.3473 -0.1683 32 1 1.5163 1.9446 -0.7939 33 1 1.7884 1.8401 0.9621 34 1 1.4418 -1.6999 1.2341 35 1 1.8846 -0.1819 2.0512 36 1 4.1318 0.3616 2.3414 37 1 6.5134 -0.1289 1.9696 38 1 7.1870 -1.8261 0.3210 39 1 5.4797 -3.0575 -0.9509 40 1 4.1042 -3.7619 -1.9620 41 1 3.4280 -6.1190 -2.4140 42 1 1.9110 -6.3686 -3.3390 43 1 4.4883 -5.0697 -4.2038 44 1 3.2741 -5.9355 -5.1861 45 1 5.5325 -5.0279 -7.0427 46 1 0.7910 -3.9176 -4.1816 47 1 1.7451 -2.5086 -3.6252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016340311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:22 Heat of formation + Delta-G solvation = 35.409245 kcal Electronic energy + Delta-G solvation = -27512.150723 eV Core-core repulsion = 23889.059214 eV Total energy + Delta-G solvation = -3623.091509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.26454 -38.51076 -37.02214 -36.81235 -33.68827 -32.06652 -31.68247 -30.80683 -29.07790 -27.45744 -27.26978 -26.64037 -24.52486 -23.64726 -22.41656 -21.31706 -20.34674 -19.97775 -19.63125 -17.64478 -16.74212 -16.10766 -15.76028 -15.40575 -15.37928 -14.89019 -14.62357 -14.45798 -14.29887 -14.19143 -13.70813 -13.55066 -13.00491 -12.79106 -12.65993 -12.31524 -12.17883 -11.99924 -11.87286 -11.76915 -11.61893 -11.46631 -11.42615 -11.00802 -10.92160 -10.86792 -10.62012 -10.26699 -10.07398 -9.89644 -9.63424 -9.22075 -8.96892 -8.81938 -8.63521 -8.38561 -8.13541 -6.77130 -5.68562 -3.00319 0.95292 1.30247 3.15625 3.41622 3.48032 3.50134 3.61150 3.93549 4.28728 4.53676 4.75747 4.76137 4.87355 5.03325 5.19735 5.27055 5.36436 5.38059 5.44792 5.49495 5.52033 5.53860 5.57800 5.68439 5.81342 5.83925 5.87107 5.90171 5.92870 6.01777 6.14572 6.26394 6.28770 6.39558 6.44175 6.46869 6.55874 6.63185 6.79551 6.84917 7.15740 7.18877 7.24250 7.57688 7.59986 7.83397 8.03386 8.28756 8.71478 9.26227 9.86298 10.52262 11.43562 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.003948 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.431665 B = 7091.289658 C = 7303.612144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.522 5.522 3 C 0.023 3.977 4 C 0.095 3.905 5 C -0.025 4.025 6 C -0.128 4.128 7 C -0.101 4.101 8 C -0.128 4.128 9 C -0.086 4.086 10 C -0.106 4.106 11 C 0.559 3.441 12 O -0.525 6.525 13 N -0.703 5.703 14 C 0.132 3.868 15 H 0.089 0.911 16 C -0.155 4.155 17 C 0.176 3.824 18 N -0.603 5.603 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.924 5.924 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.126 3.874 28 H 0.014 0.986 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.108 0.892 35 H 0.029 0.971 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.399 0.601 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.250 0.750 46 H 0.025 0.975 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 6.126 18.288 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.245 5.245 3 C -0.126 4.126 4 C -0.032 4.032 5 C -0.027 4.027 6 C -0.147 4.147 7 C -0.119 4.119 8 C -0.146 4.146 9 C -0.105 4.105 10 C -0.110 4.110 11 C 0.346 3.654 12 O -0.403 6.403 13 N -0.353 5.353 14 C 0.027 3.973 15 H 0.107 0.893 16 C -0.194 4.194 17 C 0.051 3.949 18 N -0.330 5.330 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.573 5.573 23 Si 0.740 3.260 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.001 4.001 28 H 0.032 0.968 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.126 0.874 35 H 0.047 0.953 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.234 0.766 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.664 5.998 17.826 18.881 hybrid contribution 0.752 0.921 -0.367 1.244 sum -0.912 6.919 17.459 18.802 Atomic orbital electron populations 1.22292 0.86858 1.02912 0.99152 1.61719 1.07944 1.12288 1.42527 1.22451 1.01118 0.89440 0.99566 1.21156 0.91647 0.99890 0.90476 1.19852 0.95612 0.93461 0.93746 1.21000 0.92712 1.00249 1.00739 1.21243 0.95887 0.97251 0.97561 1.21093 0.99600 0.97001 0.96922 1.21423 0.92052 0.98826 0.98176 1.19882 0.93334 0.98924 0.98844 1.18062 0.88307 0.79075 0.79974 1.90664 1.18072 1.64049 1.67536 1.45770 1.10567 1.43618 1.35364 1.22076 0.90759 0.92067 0.92429 0.89265 1.23231 1.00668 0.95725 0.99743 1.21160 0.95389 0.87607 0.90718 1.44479 1.38486 1.21751 1.28307 1.19109 1.13910 1.01334 1.00472 0.90545 1.24753 0.98900 0.97566 0.99344 1.69965 1.26771 1.21333 1.39218 0.86073 0.78027 0.79293 0.82593 1.20574 1.21865 1.21843 1.21937 0.92030 0.97790 0.88359 0.96751 0.91901 0.90389 0.91658 0.91696 0.96284 0.87450 0.95303 0.86036 0.85929 0.85584 0.85395 0.76563 0.91720 0.91048 0.93731 0.93851 0.93955 0.95705 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 9.34 60.06 0.56 1.02 16 2 N -0.52 -7.32 3.99 -252.72 -1.01 -8.33 16 3 C 0.02 0.27 9.40 60.07 0.56 0.84 16 4 C 0.10 1.25 4.13 -4.97 -0.02 1.23 16 5 C -0.03 -0.33 4.68 -104.22 -0.49 -0.82 16 6 C -0.13 -1.40 9.45 -39.64 -0.37 -1.77 16 7 C -0.10 -1.01 10.04 -39.49 -0.40 -1.41 16 8 C -0.13 -1.40 10.03 -39.64 -0.40 -1.79 16 9 C -0.09 -1.11 9.53 -39.19 -0.37 -1.49 16 10 C -0.11 -1.56 5.87 -104.97 -0.62 -2.17 16 11 C 0.56 9.41 7.71 -12.33 -0.10 9.31 16 12 O -0.53 -9.55 11.59 5.31 0.06 -9.49 16 13 N -0.70 -11.95 5.14 -52.67 -0.27 -12.22 16 14 C 0.13 2.39 3.43 -65.78 -0.23 2.17 16 15 H 0.09 1.55 7.54 -51.93 -0.39 1.16 16 16 C -0.15 -2.77 6.55 -24.89 -0.16 -2.93 16 17 C 0.18 4.12 5.36 -3.06 -0.02 4.11 16 18 N -0.60 -15.28 3.39 -170.07 -0.58 -15.86 16 19 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 20 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -26.81 10.31 55.49 0.57 -26.24 16 23 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C 0.13 2.73 6.93 -2.53 -0.02 2.71 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.76 8.06 -51.93 -0.42 0.35 16 30 H 0.08 1.08 7.55 -51.93 -0.39 0.69 16 31 H 0.06 0.82 7.46 -51.93 -0.39 0.43 16 32 H 0.06 0.75 8.03 -51.92 -0.42 0.33 16 33 H 0.02 0.20 8.01 -51.93 -0.42 -0.22 16 34 H 0.11 1.57 6.06 -51.93 -0.31 1.25 16 35 H 0.03 0.33 7.76 -51.93 -0.40 -0.07 16 36 H 0.12 1.07 7.99 -52.49 -0.42 0.65 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.13 1.57 6.44 -52.49 -0.34 1.23 16 40 H 0.40 6.58 6.73 -40.82 -0.27 6.30 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.04 1.13 7.38 -51.93 -0.38 0.75 16 44 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 47 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -31.45 372.99 -10.39 -41.83 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.45 Total: 5.11 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -2.31 Total: 2.29 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -1.28 Total: -62.65 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.06 Total: -9.49 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.45 -10.39 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016340311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.244 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds