Wall clock time and date at job start Tue Mar 31 2020 11:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00171 * 2 1 4 4 C 1.46902 * 110.99974 * 123.95036 * 2 1 3 5 5 C 1.50702 * 109.46904 * 164.54508 * 4 2 1 6 6 C 1.37986 * 120.07285 * 106.10231 * 5 4 2 7 7 C 1.38328 * 120.14564 * 179.97438 * 6 5 4 8 8 C 1.38386 * 120.29138 * 0.30411 * 7 6 5 9 9 C 1.37935 * 120.14537 * 359.44129 * 8 7 6 10 10 C 1.39556 * 120.07482 * 286.12170 * 5 4 2 11 11 C 1.47838 * 120.14415 * 0.02562 * 10 5 4 12 12 O 1.21561 * 119.99978 * 354.79002 * 11 10 5 13 13 N 1.34772 * 120.00308 * 174.79679 * 11 10 5 14 14 C 1.46497 * 120.00206 * 180.02562 * 13 11 10 15 15 H 1.08993 * 110.88866 * 328.87428 * 14 13 11 16 16 C 1.55160 * 111.00439 * 204.99772 * 14 13 11 17 17 C 1.54329 * 102.93964 * 277.42734 * 16 14 13 18 18 N 1.47026 * 107.27131 * 337.80160 * 17 16 14 19 19 C 1.36936 * 125.64575 * 178.98663 * 18 17 16 20 20 H 1.08003 * 119.99662 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00171 * 359.97438 * 19 18 17 22 22 N 1.31619 * 119.99930 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99915 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47090 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47006 * 120.00119 * 23 21 19 26 26 H 1.48504 * 109.46790 * 239.99730 * 23 21 19 27 27 C 1.47420 * 108.70284 * 358.94844 * 18 17 16 28 28 H 1.09006 * 109.47443 * 296.05123 * 1 2 3 29 29 H 1.08999 * 109.47097 * 56.04885 * 1 2 3 30 30 H 1.08998 * 109.47188 * 176.04485 * 1 2 3 31 31 H 1.08998 * 109.47219 * 189.42557 * 3 2 1 32 32 H 1.09008 * 109.47053 * 309.42425 * 3 2 1 33 33 H 1.09000 * 109.47288 * 69.41990 * 3 2 1 34 34 H 1.08996 * 109.46711 * 44.54545 * 4 2 1 35 35 H 1.08997 * 109.47084 * 284.54468 * 4 2 1 36 36 H 1.08000 * 119.92254 * 0.02562 * 6 5 4 37 37 H 1.07998 * 119.85820 * 180.02562 * 7 6 5 38 38 H 1.08006 * 119.92413 * 179.70250 * 8 7 6 39 39 H 1.07994 * 120.07456 * 180.27727 * 9 8 7 40 40 H 0.97005 * 120.00096 * 359.97438 * 13 11 10 41 41 H 1.09003 * 110.72048 * 35.78543 * 16 14 13 42 42 H 1.08997 * 110.72675 * 159.06286 * 16 14 13 43 43 H 1.09000 * 109.88258 * 97.22681 * 17 16 14 44 44 H 1.08998 * 109.87903 * 218.38615 * 17 16 14 45 45 H 0.97005 * 119.99462 * 180.02562 * 22 21 19 46 46 H 1.09010 * 110.36352 * 265.28794 * 27 18 17 47 47 H 1.08991 * 110.36983 * 142.96314 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4539 -1.0678 0.9081 6 6 4.4211 -0.3875 1.6193 7 6 5.7603 -0.6638 1.4101 8 6 6.1395 -1.6186 0.4830 9 6 5.1826 -2.3095 -0.2309 10 6 3.8294 -2.0357 -0.0246 11 6 2.7985 -2.7677 -0.7908 12 8 1.6209 -2.5962 -0.5430 13 7 3.1644 -3.6252 -1.7640 14 6 2.1429 -4.3501 -2.5237 15 1 1.2643 -4.5427 -1.9081 16 6 2.7145 -5.6702 -3.1052 17 6 3.4232 -5.2020 -4.3937 18 7 2.8209 -3.9180 -4.7812 19 6 3.1841 -3.1601 -5.8623 20 1 2.6776 -2.2275 -6.0626 21 6 4.2032 -3.5905 -6.7008 22 7 4.8200 -4.7273 -6.4569 23 14 4.6991 -2.5562 -8.1752 24 1 3.8578 -1.3337 -8.2277 25 1 6.1275 -2.1698 -8.0508 26 1 4.5058 -3.3435 -9.4195 27 6 1.7606 -3.5820 -3.8135 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0721 1.3473 -0.1683 32 1 1.5163 1.9446 -0.7939 33 1 1.7884 1.8401 0.9621 34 1 1.4418 -1.6999 1.2341 35 1 1.8846 -0.1819 2.0512 36 1 4.1318 0.3616 2.3414 37 1 6.5134 -0.1289 1.9696 38 1 7.1870 -1.8261 0.3210 39 1 5.4797 -3.0575 -0.9509 40 1 4.1042 -3.7619 -1.9620 41 1 3.4280 -6.1190 -2.4140 42 1 1.9110 -6.3686 -3.3390 43 1 4.4883 -5.0697 -4.2038 44 1 3.2741 -5.9355 -5.1861 45 1 5.5325 -5.0279 -7.0427 46 1 0.7910 -3.9176 -4.1816 47 1 1.7451 -2.5086 -3.6252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016340311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:21 Heat of formation + Delta-G solvation = 15.916389 kcal Electronic energy + Delta-G solvation = -27512.995996 eV Core-core repulsion = 23889.059214 eV Total energy + Delta-G solvation = -3623.936783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39734 -39.81205 -38.45028 -37.88673 -35.35042 -33.74240 -32.62222 -32.03253 -30.84861 -28.93510 -28.39098 -27.70717 -26.44521 -24.77760 -23.36361 -22.50795 -21.95856 -21.33995 -21.09775 -19.04282 -18.48514 -17.40110 -16.80255 -16.68771 -16.43871 -16.39331 -16.00886 -15.81196 -15.46983 -15.38587 -15.20485 -14.98178 -14.32925 -14.03690 -13.80659 -13.68963 -13.53641 -13.36090 -13.24065 -12.92550 -12.87887 -12.82146 -12.60767 -12.44566 -12.41457 -12.22358 -12.03550 -11.98541 -11.89886 -11.79707 -11.56035 -10.71360 -10.47184 -10.00892 -9.83443 -9.66896 -9.10264 -8.83690 -7.84062 -5.17624 -0.01741 0.41419 1.45362 1.45816 1.56170 2.03995 2.34454 2.49816 2.88854 3.32947 3.34913 3.70595 3.75608 3.82806 3.86688 3.98519 4.12400 4.18961 4.29500 4.34774 4.35982 4.45592 4.53884 4.60156 4.61356 4.70729 4.75292 4.78641 4.85632 4.92437 4.96219 4.99658 5.04115 5.07541 5.10134 5.12383 5.41168 5.45415 5.53205 5.55832 5.65562 5.73268 5.78457 5.98867 6.20543 6.21429 6.28822 6.71049 7.13460 7.41092 7.78932 8.43358 9.26141 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.003948 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.431665 B = 7091.289658 C = 7303.612144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.550 5.550 3 C 0.027 3.973 4 C 0.100 3.900 5 C -0.037 4.037 6 C -0.126 4.126 7 C -0.090 4.090 8 C -0.130 4.130 9 C -0.098 4.098 10 C -0.134 4.134 11 C 0.555 3.445 12 O -0.544 6.544 13 N -0.705 5.705 14 C 0.147 3.853 15 H 0.103 0.897 16 C -0.135 4.135 17 C 0.185 3.815 18 N -0.620 5.620 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.059 4.059 22 N -0.946 5.946 23 Si 0.972 3.028 24 H -0.273 1.273 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.126 3.874 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.126 0.874 40 H 0.401 0.599 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.009 0.991 45 H 0.247 0.753 46 H 0.029 0.971 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 7.391 20.146 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.273 5.273 3 C -0.121 4.121 4 C -0.027 4.027 5 C -0.039 4.039 6 C -0.145 4.145 7 C -0.108 4.108 8 C -0.148 4.148 9 C -0.117 4.117 10 C -0.137 4.137 11 C 0.343 3.657 12 O -0.423 6.423 13 N -0.356 5.356 14 C 0.041 3.959 15 H 0.121 0.879 16 C -0.173 4.173 17 C 0.060 3.940 18 N -0.346 5.346 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.252 4.252 22 N -0.595 5.595 23 Si 0.801 3.199 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.218 1.218 27 C -0.001 4.001 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.167 0.833 39 H 0.144 0.856 40 H 0.236 0.764 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.037 0.963 44 H 0.027 0.973 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.758 7.271 19.709 21.021 hybrid contribution 0.472 0.582 -0.909 1.178 sum -0.286 7.853 18.800 20.376 Atomic orbital electron populations 1.22198 0.86551 1.01832 1.00089 1.61678 1.08535 1.13565 1.43561 1.22404 1.00507 0.88568 1.00622 1.21056 0.91481 0.99123 0.90990 1.20005 0.96180 0.93662 0.94010 1.21299 0.92646 1.00076 1.00441 1.21672 0.96330 0.96222 0.96586 1.21422 1.00327 0.96608 0.96457 1.21525 0.91908 0.99437 0.98800 1.19820 0.93388 1.00333 1.00176 1.18519 0.88748 0.78676 0.79720 1.90655 1.19003 1.64533 1.68094 1.45777 1.10350 1.43987 1.35471 1.21873 0.91614 0.91399 0.91016 0.87905 1.23086 1.01249 0.95859 0.97138 1.20941 0.94655 0.86164 0.92212 1.44698 1.39318 1.22254 1.28355 1.19365 1.14136 1.01601 1.01644 0.91155 1.25496 0.99042 0.98783 1.01875 1.70157 1.26945 1.22504 1.39918 0.85099 0.77539 0.78015 0.79220 1.19773 1.21626 1.21794 1.22023 0.91359 0.97115 0.89577 0.94867 0.91923 0.92342 0.92342 0.91742 0.94322 0.89597 0.93303 0.83500 0.82445 0.83283 0.85638 0.76381 0.89037 0.89172 0.96282 0.97290 0.94363 0.95339 0.95708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.04 9.34 127.69 1.19 2.23 16 2 N -0.55 -15.14 3.99 -953.47 -3.80 -18.94 16 3 C 0.03 0.61 9.40 127.69 1.20 1.81 16 4 C 0.10 2.55 4.13 85.56 0.35 2.90 16 5 C -0.04 -0.93 4.68 -19.61 -0.09 -1.03 16 6 C -0.13 -2.37 9.45 22.23 0.21 -2.16 16 7 C -0.09 -1.48 10.04 22.33 0.22 -1.25 16 8 C -0.13 -2.51 10.03 22.23 0.22 -2.29 16 9 C -0.10 -2.45 9.53 22.53 0.21 -2.24 16 10 C -0.13 -3.87 5.87 -20.09 -0.12 -3.99 16 11 C 0.55 18.88 7.71 86.79 0.67 19.55 16 12 O -0.54 -20.14 11.59 -3.91 -0.05 -20.18 16 13 N -0.71 -24.15 5.14 -438.83 -2.25 -26.40 16 14 C 0.15 5.28 3.43 46.39 0.16 5.44 16 15 H 0.10 3.49 7.54 -2.39 -0.02 3.47 16 16 C -0.13 -4.70 6.55 31.79 0.21 -4.49 16 17 C 0.19 8.86 5.36 86.73 0.47 9.33 16 18 N -0.62 -32.18 3.39 -691.98 -2.35 -34.53 16 19 C -0.24 -13.70 10.28 84.03 0.86 -12.83 16 20 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 21 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 22 N -0.95 -56.11 10.31 21.65 0.22 -55.88 16 23 Si 0.97 46.43 29.55 68.60 2.03 48.45 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 C 0.13 5.55 6.93 86.86 0.60 6.15 16 28 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 1.52 8.06 -2.39 -0.02 1.50 16 30 H 0.06 1.67 7.55 -2.39 -0.02 1.65 16 31 H 0.06 1.38 7.46 -2.39 -0.02 1.36 16 32 H 0.06 1.42 8.03 -2.38 -0.02 1.40 16 33 H 0.04 0.71 8.01 -2.39 -0.02 0.69 16 34 H 0.09 2.53 6.06 -2.39 -0.01 2.52 16 35 H 0.05 1.01 7.76 -2.39 -0.02 0.99 16 36 H 0.15 1.97 7.99 -2.91 -0.02 1.95 16 37 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.13 3.08 6.44 -2.91 -0.02 3.06 16 40 H 0.40 13.38 6.73 -92.70 -0.62 12.76 16 41 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.02 1.00 7.38 -2.39 -0.02 0.98 16 44 H 0.01 0.48 7.50 -2.39 -0.02 0.46 16 45 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 46 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -69.71 372.99 0.97 -68.73 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.34 Total: 24.53 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 6.84 Total: 14.23 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -8.18 Total: -135.76 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.05 Total: -20.18 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -69.71 0.97 -68.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016340311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.650 kcal (2) G-P(sol) polarization free energy of solvation -69.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds