Wall clock time and date at job start Tue Mar 31 2020 11:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 110.99953 * 2 1 4 4 C 1.46900 * 110.99957 * 123.95466 * 2 1 3 5 5 C 1.50699 * 109.47455 * 169.99991 * 4 2 1 6 6 C 1.38355 * 119.85437 * 89.99408 * 5 4 2 7 7 C 1.37955 * 120.14717 * 180.02562 * 6 5 4 8 8 C 1.39586 * 119.85127 * 359.97438 * 7 6 5 9 9 C 1.47842 * 120.14230 * 179.97438 * 8 7 6 10 10 O 1.21546 * 120.00606 * 8.03330 * 9 8 7 11 11 N 1.34781 * 119.99585 * 188.03924 * 9 8 7 12 12 C 1.47022 * 125.65152 * 354.93109 * 11 9 8 13 13 C 1.54324 * 107.27164 * 178.97759 * 12 11 9 14 14 C 1.55153 * 102.94278 * 337.80670 * 13 12 11 15 15 H 1.08994 * 111.00542 * 277.42981 * 14 13 12 16 16 N 1.46501 * 111.03511 * 153.58972 * 14 13 12 17 17 C 1.36944 * 119.99885 * 161.33032 * 16 14 13 18 18 H 1.08004 * 120.00002 * 0.02562 * 17 16 14 19 19 C 1.38807 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00329 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00042 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47082 * 89.99967 * 21 19 17 23 23 H 1.48497 * 109.47096 * 210.00607 * 21 19 17 24 24 H 1.48505 * 109.46811 * 330.00056 * 21 19 17 25 25 C 1.47430 * 125.64766 * 174.97553 * 11 9 8 26 26 C 1.39573 * 119.71046 * 0.25402 * 8 7 6 27 27 C 1.37958 * 119.85353 * 359.51647 * 26 8 7 28 28 H 1.08999 * 109.47266 * 296.04249 * 1 2 3 29 29 H 1.08995 * 109.47247 * 56.04867 * 1 2 3 30 30 H 1.09005 * 109.47426 * 176.04896 * 1 2 3 31 31 H 1.08999 * 109.47035 * 183.95575 * 3 2 1 32 32 H 1.09000 * 109.47489 * 303.94873 * 3 2 1 33 33 H 1.08998 * 109.47192 * 63.95519 * 3 2 1 34 34 H 1.09002 * 109.47367 * 49.99849 * 4 2 1 35 35 H 1.08997 * 109.47194 * 290.00245 * 4 2 1 36 36 H 1.07999 * 119.92874 * 0.03182 * 6 5 4 37 37 H 1.07996 * 120.07716 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.88156 * 298.39641 * 12 11 9 39 39 H 1.09001 * 109.88182 * 59.56039 * 12 11 9 40 40 H 1.08998 * 110.71475 * 96.16993 * 13 12 11 41 41 H 1.08994 * 110.71847 * 219.44399 * 13 12 11 42 42 H 0.97002 * 120.00364 * 341.32973 * 16 14 13 43 43 H 0.96998 * 120.00245 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.36528 * 322.92882 * 25 11 9 45 45 H 1.08995 * 110.36438 * 85.13911 * 25 11 9 46 46 H 1.07996 * 120.07508 * 179.72114 * 26 8 7 47 47 H 1.08001 * 119.93292 * 180.22781 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4817 -0.9526 0.9729 6 6 4.3555 -0.0159 1.4957 7 6 5.7173 -0.1804 1.3480 8 6 6.2129 -1.2952 0.6699 9 6 7.6710 -1.4776 0.5074 10 8 8.4441 -0.7396 1.0861 11 7 8.1430 -2.4623 -0.2827 12 6 7.3294 -3.4865 -0.9540 13 6 8.2933 -4.3786 -1.7645 14 6 9.5326 -3.4653 -1.9576 15 1 9.3900 -2.7857 -2.7977 16 7 10.7504 -4.2611 -2.1304 17 6 11.8662 -3.6934 -2.6856 18 1 11.8485 -2.6590 -2.9956 19 6 13.0203 -4.4473 -2.8488 20 7 13.0421 -5.7077 -2.4705 21 14 14.5425 -3.6728 -3.6054 22 1 15.3803 -3.0781 -2.5332 23 1 15.3222 -4.7129 -4.3234 24 1 14.1351 -2.6118 -4.5612 25 6 9.5607 -2.6914 -0.6160 26 6 5.3258 -2.2339 0.1408 27 6 3.9665 -2.0599 0.2996 28 1 -0.3634 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0827 1.3432 -0.0709 32 1 1.5899 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5089 -1.7407 1.1757 35 1 1.7975 -0.2248 2.0628 36 1 3.9708 0.8460 2.0206 37 1 6.3983 0.5517 1.7561 38 1 6.8037 -4.0874 -0.2120 39 1 6.6132 -3.0106 -1.6238 40 1 8.5574 -5.2729 -1.2001 41 1 7.8559 -4.6438 -2.7270 42 1 10.7665 -5.1900 -1.8516 43 1 13.8486 -6.2344 -2.5842 44 1 10.0803 -1.7409 -0.7372 45 1 10.0407 -3.2892 0.1588 46 1 5.7027 -3.0963 -0.3888 47 1 3.2790 -2.7874 -0.1060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019518510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:56 Heat of formation + Delta-G solvation = 38.803941 kcal Electronic energy + Delta-G solvation = -25958.093474 eV Core-core repulsion = 22335.149170 eV Total energy + Delta-G solvation = -3622.944304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.51089 -39.10648 -37.45409 -36.98012 -34.27954 -32.35168 -31.50267 -31.04814 -29.72106 -28.08893 -27.97039 -26.94113 -24.49084 -23.41292 -22.94404 -22.23323 -21.10557 -20.26692 -19.68345 -17.54533 -17.07338 -16.31783 -16.11946 -15.93075 -15.81970 -15.45452 -14.73474 -14.54742 -14.41708 -14.26479 -13.82298 -13.66302 -13.42862 -13.15925 -12.91036 -12.77180 -12.71096 -12.55988 -12.36193 -12.18983 -12.10637 -11.90419 -11.74374 -11.34768 -11.12185 -10.96332 -10.75784 -10.59984 -10.31709 -10.01278 -9.78459 -9.71222 -9.12256 -9.04553 -9.01342 -8.72278 -8.35462 -7.08900 -5.84444 -3.15297 0.73243 1.24111 2.85903 3.17239 3.41957 3.47620 3.48550 3.57562 3.90733 4.36775 4.50295 4.53289 4.62378 4.75483 4.77749 4.88458 4.90970 4.93958 5.07484 5.11688 5.18853 5.20643 5.24330 5.32566 5.41590 5.43981 5.46891 5.59506 5.59763 5.70341 5.74325 5.85053 5.90763 6.10310 6.13298 6.22266 6.24036 6.31505 6.35533 6.50878 6.54176 6.58740 6.60895 6.75354 6.87691 7.65689 7.74502 8.32409 8.35284 9.45279 9.97903 10.32846 11.37538 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.002286 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.192301 B =12246.293273 C =12546.294250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.018 3.982 4 C 0.091 3.909 5 C -0.063 4.063 6 C -0.125 4.125 7 C -0.063 4.063 8 C -0.123 4.123 9 C 0.565 3.435 10 O -0.543 6.543 11 N -0.607 5.607 12 C 0.094 3.906 13 C -0.143 4.143 14 C 0.172 3.828 15 H 0.065 0.935 16 N -0.712 5.712 17 C -0.248 4.248 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.082 3.918 26 C -0.124 4.124 27 C -0.107 4.107 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.163 0.837 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.954 8.309 6.266 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.130 4.130 4 C -0.036 4.036 5 C -0.064 4.064 6 C -0.143 4.143 7 C -0.082 4.082 8 C -0.126 4.126 9 C 0.354 3.646 10 O -0.422 6.422 11 N -0.340 5.340 12 C -0.029 4.029 13 C -0.182 4.182 14 C 0.060 3.940 15 H 0.083 0.917 16 N -0.352 5.352 17 C -0.379 4.379 18 H 0.091 0.909 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.043 4.043 26 C -0.141 4.141 27 C -0.125 4.125 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.180 0.820 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.250 8.603 6.070 28.283 hybrid contribution 0.568 0.531 0.551 0.953 sum -25.682 9.135 6.621 28.051 Atomic orbital electron populations 1.22402 0.86981 1.02428 1.00602 1.61979 1.07758 1.14250 1.42525 1.22502 1.01782 0.88323 1.00372 1.21114 0.91557 0.99111 0.91840 1.19891 0.94641 0.94754 0.97067 1.20965 0.92823 0.99218 1.01323 1.21227 0.95184 0.96307 0.95488 1.19990 0.92937 0.97374 1.02306 1.17999 0.87748 0.79983 0.78824 1.90760 1.58659 1.45617 1.47182 1.48421 1.09853 1.28408 1.47274 1.22495 0.94637 0.89967 0.95768 1.22984 0.96452 0.98644 1.00111 1.21313 0.86782 0.92348 0.93583 0.91698 1.42302 1.08190 1.11424 1.73243 1.19254 0.89814 0.95716 1.33087 0.90922 1.24773 0.98249 0.95940 1.01584 1.69657 1.28383 1.07021 1.52704 0.86164 0.83090 0.77992 0.78782 1.21554 1.21708 1.20625 1.23462 0.79367 1.01538 0.99897 1.22825 0.93382 1.00078 0.97824 1.20982 0.95113 0.97723 0.98732 0.95652 0.91152 0.91199 0.90625 0.91328 0.95623 0.89664 0.93774 0.85957 0.84834 0.90847 0.90593 0.90239 0.89936 0.77819 0.93344 0.91017 0.91268 0.82018 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.57 60.06 0.57 0.71 16 2 N -0.54 -4.14 5.01 -252.73 -1.27 -5.41 16 3 C 0.02 0.13 9.13 60.06 0.55 0.68 16 4 C 0.09 0.66 5.11 -4.98 -0.03 0.64 16 5 C -0.06 -0.58 4.89 -104.53 -0.51 -1.09 16 6 C -0.12 -1.22 7.94 -39.64 -0.31 -1.53 16 7 C -0.06 -0.78 9.59 -39.18 -0.38 -1.15 16 8 C -0.12 -1.67 5.87 -104.97 -0.62 -2.29 16 9 C 0.57 9.66 7.81 -12.33 -0.10 9.56 16 10 O -0.54 -11.22 16.67 5.32 0.09 -11.13 16 11 N -0.61 -9.85 3.33 -175.15 -0.58 -10.43 16 12 C 0.09 1.17 4.87 -3.06 -0.01 1.16 16 13 C -0.14 -2.05 6.58 -24.90 -0.16 -2.22 16 14 C 0.17 3.26 3.68 -65.78 -0.24 3.02 16 15 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 16 N -0.71 -17.09 5.28 -51.35 -0.27 -17.36 16 17 C -0.25 -6.71 9.98 -15.06 -0.15 -6.86 16 18 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.08 1.57 6.58 -2.53 -0.02 1.55 16 26 C -0.12 -1.36 8.60 -39.19 -0.34 -1.69 16 27 C -0.11 -1.01 9.68 -39.64 -0.38 -1.40 16 28 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 31 H 0.08 0.63 6.16 -51.93 -0.32 0.31 16 32 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 33 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.53 8.00 -51.93 -0.42 0.12 16 35 H 0.04 0.30 8.06 -51.93 -0.42 -0.12 16 36 H 0.12 0.95 8.03 -52.49 -0.42 0.53 16 37 H 0.13 1.67 7.67 -52.49 -0.40 1.27 16 38 H 0.07 0.77 6.80 -51.93 -0.35 0.41 16 39 H 0.08 0.81 6.67 -51.93 -0.35 0.46 16 40 H 0.08 1.16 8.00 -51.93 -0.42 0.74 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.39 9.78 7.71 -40.82 -0.31 9.47 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 46 H 0.16 1.56 2.77 -57.06 -0.16 1.40 16 47 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -32.43 376.83 -10.21 -42.63 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.33 Total: 6.84 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.22 Total: -1.25 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -1.40 Total: -59.92 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.43 -10.21 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019518510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.436 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds