Wall clock time and date at job start Tue Mar 31 2020 11:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 110.99953 * 2 1 4 4 C 1.46900 * 110.99957 * 123.95466 * 2 1 3 5 5 C 1.50699 * 109.47455 * 169.99991 * 4 2 1 6 6 C 1.38355 * 119.85437 * 89.99408 * 5 4 2 7 7 C 1.37955 * 120.14717 * 180.02562 * 6 5 4 8 8 C 1.39586 * 119.85127 * 359.97438 * 7 6 5 9 9 C 1.47842 * 120.14230 * 179.97438 * 8 7 6 10 10 O 1.21546 * 120.00606 * 8.03330 * 9 8 7 11 11 N 1.34781 * 119.99585 * 188.03924 * 9 8 7 12 12 C 1.47022 * 125.65152 * 354.93109 * 11 9 8 13 13 C 1.54324 * 107.27164 * 178.97759 * 12 11 9 14 14 C 1.55153 * 102.94278 * 337.80670 * 13 12 11 15 15 H 1.08994 * 111.00542 * 277.42981 * 14 13 12 16 16 N 1.46501 * 111.03511 * 153.58972 * 14 13 12 17 17 C 1.36944 * 119.99885 * 161.33032 * 16 14 13 18 18 H 1.08004 * 120.00002 * 0.02562 * 17 16 14 19 19 C 1.38807 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00329 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00042 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47082 * 89.99967 * 21 19 17 23 23 H 1.48497 * 109.47096 * 210.00607 * 21 19 17 24 24 H 1.48505 * 109.46811 * 330.00056 * 21 19 17 25 25 C 1.47430 * 125.64766 * 174.97553 * 11 9 8 26 26 C 1.39573 * 119.71046 * 0.25402 * 8 7 6 27 27 C 1.37958 * 119.85353 * 359.51647 * 26 8 7 28 28 H 1.08999 * 109.47266 * 296.04249 * 1 2 3 29 29 H 1.08995 * 109.47247 * 56.04867 * 1 2 3 30 30 H 1.09005 * 109.47426 * 176.04896 * 1 2 3 31 31 H 1.08999 * 109.47035 * 183.95575 * 3 2 1 32 32 H 1.09000 * 109.47489 * 303.94873 * 3 2 1 33 33 H 1.08998 * 109.47192 * 63.95519 * 3 2 1 34 34 H 1.09002 * 109.47367 * 49.99849 * 4 2 1 35 35 H 1.08997 * 109.47194 * 290.00245 * 4 2 1 36 36 H 1.07999 * 119.92874 * 0.03182 * 6 5 4 37 37 H 1.07996 * 120.07716 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.88156 * 298.39641 * 12 11 9 39 39 H 1.09001 * 109.88182 * 59.56039 * 12 11 9 40 40 H 1.08998 * 110.71475 * 96.16993 * 13 12 11 41 41 H 1.08994 * 110.71847 * 219.44399 * 13 12 11 42 42 H 0.97002 * 120.00364 * 341.32973 * 16 14 13 43 43 H 0.96998 * 120.00245 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.36528 * 322.92882 * 25 11 9 45 45 H 1.08995 * 110.36438 * 85.13911 * 25 11 9 46 46 H 1.07996 * 120.07508 * 179.72114 * 26 8 7 47 47 H 1.08001 * 119.93292 * 180.22781 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4817 -0.9526 0.9729 6 6 4.3555 -0.0159 1.4957 7 6 5.7173 -0.1804 1.3480 8 6 6.2129 -1.2952 0.6699 9 6 7.6710 -1.4776 0.5074 10 8 8.4441 -0.7396 1.0861 11 7 8.1430 -2.4623 -0.2827 12 6 7.3294 -3.4865 -0.9540 13 6 8.2933 -4.3786 -1.7645 14 6 9.5326 -3.4653 -1.9576 15 1 9.3900 -2.7857 -2.7977 16 7 10.7504 -4.2611 -2.1304 17 6 11.8662 -3.6934 -2.6856 18 1 11.8485 -2.6590 -2.9956 19 6 13.0203 -4.4473 -2.8488 20 7 13.0421 -5.7077 -2.4705 21 14 14.5425 -3.6728 -3.6054 22 1 15.3803 -3.0781 -2.5332 23 1 15.3222 -4.7129 -4.3234 24 1 14.1351 -2.6118 -4.5612 25 6 9.5607 -2.6914 -0.6160 26 6 5.3258 -2.2339 0.1408 27 6 3.9665 -2.0599 0.2996 28 1 -0.3634 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0827 1.3432 -0.0709 32 1 1.5899 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5089 -1.7407 1.1757 35 1 1.7975 -0.2248 2.0628 36 1 3.9708 0.8460 2.0206 37 1 6.3983 0.5517 1.7561 38 1 6.8037 -4.0874 -0.2120 39 1 6.6132 -3.0106 -1.6238 40 1 8.5574 -5.2729 -1.2001 41 1 7.8559 -4.6438 -2.7270 42 1 10.7665 -5.1900 -1.8516 43 1 13.8486 -6.2344 -2.5842 44 1 10.0803 -1.7409 -0.7372 45 1 10.0407 -3.2892 0.1588 46 1 5.7027 -3.0963 -0.3888 47 1 3.2790 -2.7874 -0.1060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019518510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:55 Heat of formation + Delta-G solvation = 16.961843 kcal Electronic energy + Delta-G solvation = -25959.040619 eV Core-core repulsion = 22335.149170 eV Total energy + Delta-G solvation = -3623.891448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63458 -40.04423 -38.73513 -37.77556 -36.05199 -33.69733 -32.69999 -32.03641 -31.19450 -29.35906 -28.47027 -27.91621 -26.02198 -24.83986 -23.77636 -23.15546 -21.87713 -21.69094 -20.91731 -19.36032 -18.38885 -17.52056 -17.21512 -16.79579 -16.47332 -16.35643 -16.24207 -15.68260 -15.45171 -15.30267 -15.13445 -14.94293 -14.63801 -14.43825 -14.25573 -13.85652 -13.73475 -13.41470 -13.20921 -13.15016 -13.02105 -12.90665 -12.73897 -12.47826 -12.45395 -12.36293 -12.14369 -12.08558 -11.86770 -11.72367 -11.38544 -11.09918 -10.94787 -9.97151 -9.90744 -9.65441 -9.26290 -9.09208 -7.98624 -5.28526 -0.18447 0.43537 1.46597 1.48375 1.56163 1.75197 1.88973 2.54209 2.76127 3.25308 3.30964 3.44247 3.56267 3.80246 3.82357 3.94740 4.03074 4.08702 4.22060 4.24691 4.30421 4.32180 4.44431 4.46455 4.51842 4.57873 4.60973 4.65608 4.77022 4.79531 4.81263 4.88051 4.97095 5.06104 5.07501 5.08576 5.15147 5.19588 5.32519 5.34303 5.42327 5.51441 5.56645 5.92480 6.04759 6.10603 6.23407 6.47090 7.02821 7.30865 8.01943 8.26446 9.23879 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.002286 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.192301 B =12246.293273 C =12546.294250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.555 5.555 3 C 0.018 3.982 4 C 0.092 3.908 5 C -0.055 4.055 6 C -0.120 4.120 7 C -0.078 4.078 8 C -0.146 4.146 9 C 0.558 3.442 10 O -0.595 6.595 11 N -0.607 5.607 12 C 0.094 3.906 13 C -0.130 4.130 14 C 0.166 3.834 15 H 0.063 0.937 16 N -0.722 5.722 17 C -0.248 4.248 18 H 0.073 0.927 19 C -0.069 4.069 20 N -0.964 5.964 21 Si 0.970 3.030 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.270 1.270 25 C 0.092 3.908 26 C -0.118 4.118 27 C -0.104 4.104 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.379 0.621 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.047 0.953 46 H 0.178 0.822 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.575 8.145 5.738 32.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.279 5.279 3 C -0.130 4.130 4 C -0.035 4.035 5 C -0.056 4.056 6 C -0.138 4.138 7 C -0.097 4.097 8 C -0.150 4.150 9 C 0.350 3.650 10 O -0.477 6.477 11 N -0.339 5.339 12 C -0.027 4.027 13 C -0.168 4.168 14 C 0.055 3.945 15 H 0.081 0.919 16 N -0.361 5.361 17 C -0.379 4.379 18 H 0.091 0.909 19 C -0.262 4.262 20 N -0.613 5.613 21 Si 0.799 3.201 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.194 1.194 25 C -0.034 4.034 26 C -0.135 4.135 27 C -0.122 4.122 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.212 0.788 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.194 0.806 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -29.938 8.453 5.528 31.596 hybrid contribution 1.541 0.660 0.760 1.841 sum -28.396 9.113 6.288 30.479 Atomic orbital electron populations 1.22439 0.85711 1.03171 1.01033 1.61979 1.08972 1.14283 1.42684 1.22482 1.00915 0.88597 1.01002 1.21158 0.90024 1.00169 0.92159 1.20221 0.95832 0.94034 0.95490 1.21131 0.91653 1.00014 1.01023 1.21238 0.96279 0.96075 0.96127 1.19787 0.90755 0.99346 1.05080 1.18679 0.89244 0.79157 0.77891 1.90719 1.60247 1.47475 1.49304 1.48440 1.08861 1.29213 1.47354 1.22815 0.94116 0.89122 0.96606 1.22934 0.94254 0.97816 1.01835 1.21468 0.87063 0.93051 0.92914 0.91869 1.42418 1.09159 1.11435 1.73124 1.19580 0.90873 0.95683 1.31794 0.90909 1.25522 1.01045 0.96565 1.03038 1.69789 1.28796 1.08190 1.54559 0.85202 0.79701 0.77277 0.77950 1.21848 1.21825 1.19440 1.23037 0.81306 0.99637 0.99431 1.22931 0.93696 0.99609 0.97307 1.21318 0.94738 0.98164 0.97970 0.95102 0.90881 0.90302 0.91990 0.90940 0.94866 0.88019 0.93006 0.84138 0.86379 0.87738 0.87620 0.90360 0.87405 0.78769 0.93845 0.93849 0.93452 0.80568 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.57 127.69 1.22 1.42 16 2 N -0.56 -6.66 5.01 -953.50 -4.78 -11.44 16 3 C 0.02 0.22 9.13 127.69 1.17 1.38 16 4 C 0.09 0.99 5.11 85.56 0.44 1.43 16 5 C -0.05 -0.83 4.89 -19.81 -0.10 -0.93 16 6 C -0.12 -2.13 7.94 22.23 0.18 -1.95 16 7 C -0.08 -1.91 9.59 22.53 0.22 -1.69 16 8 C -0.15 -3.88 5.87 -20.09 -0.12 -4.00 16 9 C 0.56 19.53 7.81 86.78 0.68 20.21 16 10 O -0.59 -26.06 16.67 -3.86 -0.06 -26.13 16 11 N -0.61 -19.63 3.33 -826.33 -2.75 -22.38 16 12 C 0.09 2.09 4.87 86.73 0.42 2.51 16 13 C -0.13 -3.45 6.58 31.78 0.21 -3.24 16 14 C 0.17 6.30 3.68 46.38 0.17 6.47 16 15 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 16 N -0.72 -35.26 5.28 -316.38 -1.67 -36.93 16 17 C -0.25 -13.63 9.98 84.03 0.84 -12.79 16 18 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 20 N -0.96 -57.96 13.06 21.65 0.28 -57.68 16 21 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.09 3.65 6.58 86.85 0.57 4.22 16 26 C -0.12 -2.24 8.60 22.53 0.19 -2.05 16 27 C -0.10 -1.55 9.68 22.23 0.22 -1.33 16 28 H 0.03 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.07 0.55 8.12 -2.39 -0.02 0.53 16 30 H 0.08 0.49 8.12 -2.38 -0.02 0.48 16 31 H 0.06 0.91 6.16 -2.39 -0.01 0.89 16 32 H 0.07 0.79 8.12 -2.39 -0.02 0.78 16 33 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.10 0.80 8.00 -2.39 -0.02 0.78 16 35 H 0.05 0.50 8.06 -2.39 -0.02 0.48 16 36 H 0.14 1.91 8.03 -2.91 -0.02 1.89 16 37 H 0.12 3.16 7.67 -2.91 -0.02 3.14 16 38 H 0.10 1.76 6.80 -2.39 -0.02 1.74 16 39 H 0.11 1.80 6.67 -2.39 -0.02 1.78 16 40 H 0.08 2.14 8.00 -2.39 -0.02 2.12 16 41 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.38 19.53 7.71 -92.71 -0.72 18.82 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.04 1.92 8.09 -2.39 -0.02 1.90 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.18 2.66 2.77 -7.20 -0.02 2.64 16 47 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -73.38 376.83 0.06 -73.31 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.24 Total: 26.76 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.77 Total: 6.19 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -8.91 Total: -128.43 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.06 Total: -26.13 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -73.38 0.06 -73.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019518510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.273 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds